Wall clock time and date at job start Mon Mar 30 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99650 * 2 1 4 4 H 1.48501 * 109.46767 * 270.00272 * 3 2 1 5 5 H 1.48504 * 109.47120 * 29.99581 * 3 2 1 6 6 H 1.48495 * 109.47373 * 149.99890 * 3 2 1 7 7 C 1.37872 * 120.00564 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00043 * 0.02562 * 7 2 1 10 10 H 1.09011 * 109.72919 * 300.59254 * 9 7 2 11 11 N 1.47270 * 109.71028 * 61.18663 * 9 7 2 12 12 C 1.46948 * 111.52443 * 171.12519 * 11 9 7 13 13 C 1.53553 * 109.59893 * 288.61914 * 12 11 9 14 14 C 1.50770 * 107.80098 * 48.90865 * 13 12 11 15 15 C 1.40293 * 128.75833 * 164.28962 * 14 13 12 16 16 C 1.34947 * 107.15963 * 180.11216 * 15 14 13 17 17 N 1.36982 * 108.27602 * 0.02562 * 16 15 14 18 18 H 0.96998 * 125.65836 * 179.91455 * 17 16 15 19 19 C 1.35378 * 123.48095 * 344.35298 * 14 13 12 20 20 C 1.51357 * 110.29149 * 180.02562 * 16 15 14 21 21 C 1.54422 * 105.01606 * 343.02928 * 20 16 15 22 22 C 1.51423 * 142.55540 * 0.07450 * 15 14 13 23 23 H 0.96994 * 120.00858 * 0.02562 * 1 2 3 24 24 H 1.00897 * 111.00451 * 295.46203 * 11 9 7 25 25 H 1.08996 * 109.44581 * 48.65046 * 12 11 9 26 26 H 1.08998 * 109.45429 * 168.60233 * 12 11 9 27 27 H 1.09004 * 109.79774 * 168.49038 * 13 12 11 28 28 H 1.09007 * 109.79145 * 289.33849 * 13 12 11 29 29 H 1.08994 * 110.33163 * 224.14521 * 20 16 15 30 30 H 1.09000 * 110.32852 * 101.91025 * 20 16 15 31 31 H 1.09002 * 110.94124 * 143.91176 * 21 20 16 32 32 H 1.08997 * 110.93835 * 267.56496 * 21 20 16 33 33 H 1.09000 * 110.32082 * 78.07515 * 22 15 14 34 34 H 1.08995 * 110.36464 * 315.83556 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2513 -2.4991 0.0005 10 1 0.6147 -2.5566 0.8836 11 7 0.4247 -2.5955 -1.2145 12 6 -0.1634 -3.9341 -1.3617 13 6 0.9340 -4.9405 -1.7367 14 6 2.0845 -4.7449 -0.7820 15 6 3.1679 -5.5986 -0.5257 16 6 3.9363 -4.9976 0.4067 17 7 3.3581 -3.7994 0.7327 18 1 3.7013 -3.1633 1.3796 19 6 2.2272 -3.6499 0.0011 20 6 5.1333 -5.8628 0.7376 21 6 4.7723 -7.2662 0.2040 22 6 3.7668 -6.9324 -0.9194 23 1 -0.4851 0.8399 -0.0004 24 1 -0.2901 -1.8835 -1.2231 25 1 -0.6241 -4.2335 -0.4204 26 1 -0.9202 -3.9139 -2.1459 27 1 0.5492 -5.9565 -1.6479 28 1 1.2674 -4.7593 -2.7586 29 1 5.2900 -5.8963 1.8157 30 1 6.0241 -5.4846 0.2360 31 1 5.6524 -7.7687 -0.1974 32 1 4.3022 -7.8692 0.9808 33 1 4.2823 -6.8483 -1.8760 34 1 2.9907 -7.6959 -0.9724 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259924372.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:56 Heat of formation + Delta-G solvation = 25.894232 kcal Electronic energy + Delta-G solvation = -16351.930545 eV Core-core repulsion = 13862.911154 eV Total energy + Delta-G solvation = -2489.019391 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.45132 -38.21232 -36.33164 -34.91249 -32.43147 -30.54540 -28.80260 -28.02533 -27.00280 -23.86440 -23.21455 -21.35489 -19.89321 -19.23280 -18.48945 -17.91468 -16.49564 -16.48348 -15.75965 -15.50379 -15.12352 -14.32524 -14.30057 -13.97756 -13.69328 -13.47878 -13.20087 -12.90904 -12.85374 -12.57596 -12.52335 -12.23351 -11.91205 -11.88695 -11.61150 -11.36171 -11.21090 -10.71588 -9.18283 -8.91339 -8.44323 -8.15240 -6.36566 1.37648 1.41080 1.48476 1.53139 2.12215 2.36328 2.38989 3.04237 3.83894 3.93781 3.96172 4.25777 4.30015 4.31906 4.49066 4.60675 4.67843 4.80391 4.90957 4.97723 4.98745 5.02392 5.03603 5.18324 5.27610 5.31714 5.46415 5.58116 5.67090 5.67112 5.92720 6.34634 6.47657 6.62489 6.85478 6.95884 7.03956 7.36527 8.85548 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.032083 B = 0.008176 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.522601 B = 3423.643174 C = 4127.335970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.027 3.973 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.286 3.714 10 H -0.031 1.031 11 N -0.687 5.687 12 C 0.053 3.947 13 C -0.029 4.029 14 C -0.185 4.185 15 C -0.202 4.202 16 C -0.055 4.055 17 N -0.530 5.530 18 H 0.410 0.590 19 C 0.034 3.966 20 C -0.029 4.029 21 C -0.102 4.102 22 C -0.043 4.043 23 H 0.269 0.731 24 H 0.352 0.648 25 H 0.005 0.995 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 -11.787 0.203 13.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.177 3.823 10 H -0.014 1.014 11 N -0.322 5.322 12 C -0.077 4.077 13 C -0.068 4.068 14 C -0.191 4.191 15 C -0.208 4.208 16 C -0.167 4.167 17 N -0.122 5.122 18 H 0.246 0.754 19 C -0.081 4.081 20 C -0.067 4.067 21 C -0.140 4.140 22 C -0.081 4.081 23 H 0.078 0.922 24 H 0.173 0.827 25 H 0.023 0.977 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.559 -11.709 -0.086 13.937 hybrid contribution -0.658 1.808 1.036 2.185 sum 6.901 -9.901 0.950 12.106 Atomic orbital electron populations 1.69803 1.07177 1.28145 1.50584 1.25739 0.95791 1.02460 0.93360 0.85444 0.78529 0.78717 0.78191 1.20315 1.20374 1.19418 1.21209 0.92672 0.90871 1.51768 0.93020 1.17392 0.88362 0.89463 0.87046 1.01354 1.60567 1.27297 1.03923 1.40427 1.22044 0.96176 0.90947 0.98545 1.20010 0.92123 0.97860 0.96765 1.19077 1.00264 0.95494 1.04255 1.20457 0.97246 0.99974 1.03136 1.21816 1.01866 0.88707 1.04325 1.40963 1.19734 1.17024 1.34515 0.75367 1.20616 0.91216 0.98285 0.97970 1.20667 0.91716 0.92531 1.01802 1.22332 0.99484 0.94652 0.97501 1.20499 0.97509 0.91192 0.98906 0.92200 0.82683 0.97667 0.90167 0.90187 0.91920 0.90330 0.89826 0.87600 0.90300 0.90964 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.93 11.64 21.45 0.25 -51.68 16 2 C 0.03 1.48 5.39 84.65 0.46 1.94 16 3 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -29.73 8.72 25.60 0.22 -29.51 16 8 H 0.05 2.90 7.70 -2.91 -0.02 2.87 16 9 C 0.29 15.53 2.74 43.41 0.12 15.65 16 10 H -0.03 -1.84 8.14 -2.38 -0.02 -1.86 16 11 N -0.69 -35.38 6.38 -497.08 -3.17 -38.55 16 12 C 0.05 2.25 6.53 86.48 0.56 2.81 16 13 C -0.03 -1.16 6.51 30.06 0.20 -0.97 16 14 C -0.18 -8.15 6.01 -20.00 -0.12 -8.27 16 15 C -0.20 -7.55 6.95 -19.89 -0.14 -7.69 16 16 C -0.05 -1.97 8.04 41.21 0.33 -1.64 16 17 N -0.53 -22.29 5.97 -169.99 -1.01 -23.30 16 18 H 0.41 15.99 8.96 -92.71 -0.83 15.16 16 19 C 0.03 1.65 6.41 41.39 0.27 1.91 16 20 C -0.03 -0.70 6.78 30.54 0.21 -0.50 16 21 C -0.10 -2.00 7.13 31.56 0.22 -1.78 16 22 C -0.04 -1.14 6.79 30.56 0.21 -0.93 16 23 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 24 H 0.35 19.05 7.04 -89.70 -0.63 18.42 16 25 H 0.01 0.22 8.07 -2.39 -0.02 0.21 16 26 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.38 274.35 0.28 -65.11 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.35 Total: 31.79 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 2.54 Total: -28.98 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -3.94 Total: -113.54 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -65.38 0.28 -65.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259924372.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.000 kcal (2) G-P(sol) polarization free energy of solvation -65.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds