Wall clock time and date at job start Mon Mar 30 2020 03:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46752 * 2 1 4 4 C 1.50699 * 109.47047 * 240.00870 * 2 1 3 5 5 N 1.31937 * 125.98719 * 60.01789 * 4 2 1 6 6 C 1.33742 * 109.89206 * 179.97438 * 5 4 2 7 7 C 1.39532 * 125.63017 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99788 * 174.23503 * 7 6 5 9 9 C 1.40123 * 120.00535 * 354.23215 * 7 6 5 10 10 N 1.30801 * 119.99840 * 6.08921 * 9 7 6 11 11 Si 1.86801 * 120.00399 * 186.08289 * 9 7 6 12 12 H 1.48496 * 109.46894 * 94.98350 * 11 9 7 13 13 H 1.48502 * 109.47103 * 214.98474 * 11 9 7 14 14 H 1.48502 * 109.46949 * 334.98453 * 11 9 7 15 15 N 1.36879 * 108.73291 * 0.02562 * 6 5 4 16 16 N 1.39864 * 134.68651 * 180.02562 * 15 6 5 17 17 C 1.30965 * 119.62172 * 179.97438 * 16 15 6 18 18 N 1.33004 * 122.01463 * 359.97438 * 17 16 15 19 19 C 1.31773 * 121.82374 * 0.02562 * 18 17 16 20 20 C 1.38157 * 106.78628 * 359.75385 * 15 6 5 21 21 H 1.08999 * 109.47450 * 59.99963 * 1 2 3 22 22 H 1.09000 * 109.46825 * 299.99707 * 1 2 3 23 23 H 1.09000 * 109.46652 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47450 * 120.00037 * 2 1 3 25 25 H 1.09001 * 109.46760 * 60.00256 * 3 2 1 26 26 H 1.09000 * 109.46525 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47173 * 300.00206 * 3 2 1 28 28 H 0.97002 * 120.00312 * 179.97438 * 10 9 7 29 29 H 1.07995 * 118.99875 * 180.02562 * 17 16 15 30 30 H 1.07995 * 120.30501 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7102 -1.2306 5 7 1.7877 -0.3636 -2.4799 6 6 2.3912 -1.2161 -3.3151 7 6 2.3488 -1.1561 -4.7085 8 1 2.9460 -1.8372 -5.2967 9 6 1.5315 -0.2124 -5.3447 10 7 0.9008 0.6892 -4.6374 11 14 1.3428 -0.2416 -7.2030 12 1 0.1275 -1.0143 -7.5649 13 1 1.2147 1.1485 -7.7094 14 1 2.5362 -0.8822 -7.8117 15 7 3.0563 -2.1579 -2.5773 16 7 3.8445 -3.2717 -2.8846 17 6 4.3531 -3.9918 -1.9162 18 7 4.1453 -3.6988 -0.6356 19 6 3.4142 -2.6656 -0.2690 20 6 2.8425 -1.8474 -1.2482 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 0.3353 1.3427 -5.0778 29 1 4.9605 -4.8494 -2.1650 30 1 3.2611 -2.4505 0.7782 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999194.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:12 Heat of formation + Delta-G solvation = 106.028837 kcal Electronic energy + Delta-G solvation = -15999.378618 eV Core-core repulsion = 13410.293781 eV Total energy + Delta-G solvation = -2589.084838 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86671 -37.54088 -35.01025 -33.54564 -32.33452 -30.16178 -28.72727 -26.58595 -25.94071 -23.85851 -22.29912 -21.31416 -18.57763 -18.00175 -16.82339 -16.35188 -15.22428 -14.74932 -14.64016 -13.82419 -13.51306 -13.12368 -12.81482 -12.78473 -12.02479 -11.60735 -11.59255 -11.40599 -11.29802 -10.80836 -10.71606 -10.48557 -10.39427 -10.22322 -10.07474 -9.50138 -8.84485 -8.40442 -8.30658 -7.14916 -6.83976 -4.57643 1.46228 2.50078 2.99227 3.01365 3.05138 3.43291 3.84433 4.14484 4.46454 4.93790 5.17109 5.21526 5.41487 5.44802 5.78311 5.88744 5.98790 6.12059 6.19492 6.39968 6.44462 6.51212 6.55171 6.78590 6.81933 6.93356 6.98791 7.34431 7.68743 7.86727 8.07693 8.46747 8.60328 9.37576 9.51165 10.07218 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.011097 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.723601 B = 2522.709274 C = 3671.710620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.011 4.011 3 C -0.136 4.136 4 C 0.131 3.869 5 N -0.453 5.453 6 C 0.414 3.586 7 C -0.419 4.419 8 H 0.095 0.905 9 C 0.076 3.924 10 N -0.725 5.725 11 Si 0.924 3.076 12 H -0.267 1.267 13 H -0.273 1.273 14 H -0.259 1.259 15 N -0.352 5.352 16 N -0.320 5.320 17 C 0.262 3.738 18 N -0.625 5.625 19 C 0.279 3.721 20 C -0.236 4.236 21 H 0.068 0.932 22 H 0.049 0.951 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.281 0.719 29 H 0.192 0.808 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 0.565 4.858 4.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 C -0.194 4.194 4 C -0.026 4.026 5 N -0.172 5.172 6 C 0.180 3.820 7 C -0.458 4.458 8 H 0.113 0.887 9 C -0.151 4.151 10 N -0.348 5.348 11 Si 0.748 3.252 12 H -0.192 1.192 13 H -0.198 1.198 14 H -0.183 1.183 15 N -0.132 5.132 16 N -0.134 5.134 17 C -0.039 4.039 18 N -0.348 5.348 19 C 0.097 3.903 20 C -0.344 4.344 21 H 0.087 0.913 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.208 0.792 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.624 0.653 3.880 3.984 hybrid contribution 0.137 -0.332 -0.363 0.510 sum -0.487 0.321 3.517 3.565 Atomic orbital electron populations 1.21729 0.94354 1.01467 1.01805 1.19444 0.95746 0.95331 0.92546 1.21731 1.00556 0.95269 1.01803 1.21286 0.94853 0.91677 0.94766 1.71286 1.23716 1.24173 0.97981 1.20023 0.87546 0.81374 0.93104 1.18477 1.23497 1.16351 0.87456 0.88726 1.25928 0.94002 0.93756 1.01410 1.70009 1.17698 1.09479 1.37601 0.86026 0.79959 0.78585 0.80673 1.19202 1.19793 1.18287 1.46479 1.40782 1.20957 1.05031 1.75620 1.10158 0.98766 1.28894 1.25171 0.95628 0.97394 0.85729 1.68273 1.25285 1.22110 1.19148 1.22398 0.84288 0.85575 0.98069 1.19844 1.19052 1.07747 0.87802 0.91301 0.93198 0.93324 0.91124 0.93189 0.93307 0.91318 0.90763 0.79177 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.18 37.16 0.34 -1.87 16 2 C -0.01 -0.19 3.34 -91.77 -0.31 -0.50 16 3 C -0.14 -2.20 9.18 37.16 0.34 -1.86 16 4 C 0.13 3.00 5.70 -82.02 -0.47 2.53 16 5 N -0.45 -11.91 9.32 -8.42 -0.08 -11.99 16 6 C 0.41 11.51 7.56 -155.74 -1.18 10.34 16 7 C -0.42 -11.28 9.43 -38.39 -0.36 -11.64 16 8 H 0.09 2.51 7.86 -52.49 -0.41 2.10 16 9 C 0.08 1.87 5.49 -17.28 -0.09 1.78 16 10 N -0.72 -18.30 11.88 55.56 0.66 -17.64 16 11 Si 0.92 18.22 29.57 -169.99 -5.03 13.19 16 12 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 14 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 15 N -0.35 -9.36 4.15 -10.11 -0.04 -9.40 16 16 N -0.32 -7.90 12.01 29.29 0.35 -7.54 16 17 C 0.26 5.50 12.37 -91.81 -1.14 4.37 16 18 N -0.62 -13.02 10.40 -14.30 -0.15 -13.17 16 19 C 0.28 5.67 11.26 -16.98 -0.19 5.48 16 20 C -0.24 -5.60 6.85 -83.90 -0.58 -6.17 16 21 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 29 H 0.19 3.10 8.06 -52.49 -0.42 2.68 16 30 H 0.16 2.45 7.96 -52.49 -0.42 2.03 16 LS Contribution 267.98 15.07 4.04 4.04 Total: -1.00 -30.76 267.98 -7.21 -37.97 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.34 Total: 2.09 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.63 Total: 2.46 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.74 Total: -59.75 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.76 -7.21 -37.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999194.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.997 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds