Wall clock time and date at job start Mon Mar 30 2020 03:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46752 * 2 1 4 4 C 1.50699 * 109.47047 * 240.00870 * 2 1 3 5 5 N 1.31937 * 125.98719 * 60.01789 * 4 2 1 6 6 C 1.33742 * 109.89206 * 179.97438 * 5 4 2 7 7 C 1.39532 * 125.63017 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99788 * 174.23503 * 7 6 5 9 9 C 1.40123 * 120.00535 * 354.23215 * 7 6 5 10 10 N 1.30801 * 119.99840 * 6.08921 * 9 7 6 11 11 Si 1.86801 * 120.00399 * 186.08289 * 9 7 6 12 12 H 1.48496 * 109.46894 * 94.98350 * 11 9 7 13 13 H 1.48502 * 109.47103 * 214.98474 * 11 9 7 14 14 H 1.48502 * 109.46949 * 334.98453 * 11 9 7 15 15 N 1.36879 * 108.73291 * 0.02562 * 6 5 4 16 16 N 1.39864 * 134.68651 * 180.02562 * 15 6 5 17 17 C 1.30965 * 119.62172 * 179.97438 * 16 15 6 18 18 N 1.33004 * 122.01463 * 359.97438 * 17 16 15 19 19 C 1.31773 * 121.82374 * 0.02562 * 18 17 16 20 20 C 1.38157 * 106.78628 * 359.75385 * 15 6 5 21 21 H 1.08999 * 109.47450 * 59.99963 * 1 2 3 22 22 H 1.09000 * 109.46825 * 299.99707 * 1 2 3 23 23 H 1.09000 * 109.46652 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47450 * 120.00037 * 2 1 3 25 25 H 1.09001 * 109.46760 * 60.00256 * 3 2 1 26 26 H 1.09000 * 109.46525 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47173 * 300.00206 * 3 2 1 28 28 H 0.97002 * 120.00312 * 179.97438 * 10 9 7 29 29 H 1.07995 * 118.99875 * 180.02562 * 17 16 15 30 30 H 1.07995 * 120.30501 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7102 -1.2306 5 7 1.7877 -0.3636 -2.4799 6 6 2.3912 -1.2161 -3.3151 7 6 2.3488 -1.1561 -4.7085 8 1 2.9460 -1.8372 -5.2967 9 6 1.5315 -0.2124 -5.3447 10 7 0.9008 0.6892 -4.6374 11 14 1.3428 -0.2416 -7.2030 12 1 0.1275 -1.0143 -7.5649 13 1 1.2147 1.1485 -7.7094 14 1 2.5362 -0.8822 -7.8117 15 7 3.0563 -2.1579 -2.5773 16 7 3.8445 -3.2717 -2.8846 17 6 4.3531 -3.9918 -1.9162 18 7 4.1453 -3.6988 -0.6356 19 6 3.4142 -2.6656 -0.2690 20 6 2.8425 -1.8474 -1.2482 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 0.3353 1.3427 -5.0778 29 1 4.9605 -4.8494 -2.1650 30 1 3.2611 -2.4505 0.7782 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259999194.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:12 Heat of formation + Delta-G solvation = 87.366397 kcal Electronic energy + Delta-G solvation = -16000.187882 eV Core-core repulsion = 13410.293781 eV Total energy + Delta-G solvation = -2589.894102 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.66539 -39.27092 -36.54455 -35.35125 -34.03657 -31.96438 -30.55407 -27.87658 -27.76255 -25.58606 -23.92855 -23.07908 -20.21743 -19.80450 -18.52450 -18.17094 -16.92263 -16.46614 -16.35172 -15.44431 -14.90276 -14.76950 -14.41424 -14.26374 -13.66984 -13.35608 -13.08445 -12.94182 -12.83329 -12.55936 -12.14905 -12.01596 -11.99422 -11.72174 -11.66455 -11.28144 -10.63108 -10.26630 -10.09050 -9.00381 -8.65526 -6.50723 -0.22101 0.74181 1.36498 1.43488 1.50814 1.65910 2.18931 2.33739 2.76436 3.28033 3.40548 3.63591 3.89870 4.01319 4.29234 4.43176 4.51972 4.71579 4.82330 4.93643 5.05802 5.07292 5.10457 5.14285 5.17434 5.50508 5.59569 5.60998 5.89450 6.01465 6.22074 6.62438 6.74396 7.57061 7.67698 8.28744 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.020942 B = 0.011097 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.723601 B = 2522.709274 C = 3671.710620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 C -0.128 4.128 4 C 0.127 3.873 5 N -0.484 5.484 6 C 0.379 3.621 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.038 3.962 10 N -0.757 5.757 11 Si 1.000 3.000 12 H -0.260 1.260 13 H -0.256 1.256 14 H -0.261 1.261 15 N -0.370 5.370 16 N -0.364 5.364 17 C 0.270 3.730 18 N -0.621 5.621 19 C 0.291 3.709 20 C -0.263 4.263 21 H 0.036 0.964 22 H 0.090 0.910 23 H 0.042 0.958 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.291 0.709 29 H 0.235 0.765 30 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.514 0.322 6.556 6.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.032 4.032 3 C -0.186 4.186 4 C -0.029 4.029 5 N -0.204 5.204 6 C 0.143 3.857 7 C -0.497 4.497 8 H 0.100 0.900 9 C -0.186 4.186 10 N -0.381 5.381 11 Si 0.819 3.181 12 H -0.185 1.185 13 H -0.180 1.180 14 H -0.185 1.185 15 N -0.149 5.149 16 N -0.180 5.180 17 C -0.030 4.030 18 N -0.343 5.343 19 C 0.108 3.892 20 C -0.371 4.371 21 H 0.055 0.945 22 H 0.109 0.891 23 H 0.061 0.939 24 H 0.126 0.874 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.251 0.749 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.573 0.404 5.619 5.662 hybrid contribution 0.217 -0.376 -0.692 0.816 sum -0.357 0.028 4.927 4.940 Atomic orbital electron populations 1.21663 0.93508 1.01203 1.02204 1.19736 0.96399 0.95757 0.91270 1.21666 1.00122 0.94589 1.02205 1.22205 0.93838 0.91492 0.95378 1.71245 1.24914 1.24793 0.99425 1.20470 0.88784 0.82497 0.93983 1.18679 1.25350 1.17849 0.87813 0.89994 1.26822 0.92914 0.92661 1.06188 1.70056 1.18198 1.10064 1.39765 0.84939 0.79721 0.79292 0.74193 1.18498 1.18036 1.18519 1.46700 1.40791 1.21247 1.06172 1.75626 1.11962 0.99547 1.30844 1.26116 0.94137 0.97307 0.85480 1.68444 1.25023 1.22055 1.18790 1.23253 0.82183 0.83997 0.99732 1.20540 1.20050 1.08881 0.87626 0.94478 0.89127 0.93920 0.87439 0.89123 0.93879 0.94483 0.89846 0.74910 0.77398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.18 71.98 0.66 -3.28 16 2 C -0.01 -0.40 3.34 -11.54 -0.04 -0.44 16 3 C -0.13 -3.93 9.18 71.98 0.66 -3.27 16 4 C 0.13 5.79 5.70 42.88 0.24 6.03 16 5 N -0.48 -26.45 9.32 -180.55 -1.68 -28.14 16 6 C 0.38 22.06 7.56 133.46 1.01 23.07 16 7 C -0.46 -26.02 9.43 23.04 0.22 -25.80 16 8 H 0.08 4.64 7.86 -2.91 -0.02 4.62 16 9 C 0.04 1.93 5.49 85.30 0.47 2.39 16 10 N -0.76 -39.70 11.88 21.86 0.26 -39.44 16 11 Si 1.00 38.27 29.57 68.60 2.03 40.30 16 12 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 13 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 14 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 15 N -0.37 -20.12 4.15 -185.90 -0.77 -20.89 16 16 N -0.36 -18.17 12.01 -61.25 -0.74 -18.90 16 17 C 0.27 10.89 12.37 180.76 2.24 13.12 16 18 N -0.62 -24.14 10.40 -199.17 -2.07 -26.21 16 19 C 0.29 11.01 11.26 85.09 0.96 11.97 16 20 C -0.26 -12.35 6.85 38.87 0.27 -12.09 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.11 2.73 7.95 -2.39 -0.02 2.71 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 28 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 29 H 0.24 6.96 8.06 -2.91 -0.02 6.94 16 30 H 0.21 5.48 7.96 -2.91 -0.02 5.45 16 Total: -1.00 -71.09 267.98 4.85 -66.23 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.15 Total: 15.33 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.68 Total: 11.71 kcal Atomic # 7 Polarization: -128.57 SS G_CDS: -5.00 Total: -133.58 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -71.09 4.85 -66.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999194.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.599 kcal (2) G-P(sol) polarization free energy of solvation -71.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds