Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30101 * 124.95271 * 2 1 4 4 C 1.35681 * 109.49874 * 179.97438 * 3 2 1 5 5 C 1.40661 * 107.13412 * 359.97438 * 4 3 2 6 6 N 1.32316 * 120.36607 * 179.97438 * 5 4 3 7 7 C 1.31715 * 121.57774 * 0.02562 * 6 5 4 8 8 C 1.38575 * 121.35796 * 359.97438 * 7 6 5 9 9 C 1.38214 * 119.55772 * 0.28818 * 8 7 6 10 10 C 1.50695 * 120.91876 * 179.69739 * 9 8 7 11 11 H 1.08999 * 109.47060 * 144.99849 * 10 9 8 12 12 N 1.46903 * 109.47369 * 24.99174 * 10 9 8 13 13 C 1.50704 * 109.46763 * 264.99476 * 10 9 8 14 14 H 1.07995 * 120.00191 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00138 * 179.97438 * 13 10 9 16 16 N 1.31521 * 119.99576 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00249 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47081 * 60.00192 * 17 15 13 19 19 H 1.48505 * 109.47198 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47237 * 300.00099 * 17 15 13 21 21 N 1.36121 * 124.95173 * 179.97438 * 2 1 3 22 22 H 0.96999 * 126.27902 * 359.97438 * 21 2 1 23 23 H 1.08993 * 109.47225 * 270.00304 * 1 2 3 24 24 H 1.08997 * 109.47032 * 30.00434 * 1 2 3 25 25 H 1.09003 * 109.47069 * 150.00060 * 1 2 3 26 26 H 1.08002 * 119.31752 * 180.02562 * 7 6 5 27 27 H 1.08002 * 120.21700 * 180.02562 * 8 7 6 28 28 H 1.00900 * 110.99986 * 299.99997 * 12 10 9 29 29 H 1.00898 * 110.99702 * 63.95963 * 12 10 9 30 30 H 0.97004 * 119.99739 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5601 0.7048 0.0006 5 6 3.6014 -0.7012 0.0015 6 7 4.7621 -1.3363 0.0018 7 6 5.9058 -0.6830 0.0016 8 6 5.9450 0.7022 0.0006 9 6 4.7626 1.4177 0.0059 10 6 4.7694 2.9247 0.0119 11 1 3.9281 3.2942 -0.5744 12 7 6.0258 3.4110 -0.5740 13 6 4.6507 3.4219 1.4295 14 1 4.5771 2.7172 2.2446 15 6 4.6359 4.7765 1.6861 16 7 4.7250 5.6347 0.6935 17 14 4.4880 5.3928 3.4432 18 1 5.6334 4.8888 4.2426 19 1 4.4949 6.8778 3.4492 20 1 3.2175 4.9018 4.0347 21 7 2.2868 -1.1157 0.0005 22 1 1.9747 -2.0341 0.0013 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 6.8321 -1.2384 0.0013 27 1 6.8933 1.2191 0.0001 28 1 6.8213 3.0818 -0.0479 29 1 6.0989 3.1451 -1.5445 30 1 4.7142 6.5878 0.8739 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = 59.109248 kcal Electronic energy + Delta-G solvation = -15817.363880 eV Core-core repulsion = 13226.244456 eV Total energy + Delta-G solvation = -2591.119424 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.24828 -39.52256 -36.92593 -34.31692 -33.40545 -32.33524 -31.17522 -29.09558 -27.90510 -24.96694 -23.76653 -22.31873 -21.75188 -18.87081 -18.56739 -18.30510 -17.05581 -16.74898 -16.40779 -16.17507 -15.38514 -14.52043 -14.46780 -14.32720 -14.19713 -13.92026 -13.31049 -12.94000 -12.88672 -12.76004 -12.61542 -12.11123 -11.88845 -11.77008 -11.21332 -10.55527 -10.20319 -9.63785 -9.29821 -8.96073 -7.98678 -6.19744 -0.07293 0.34889 1.40847 1.42829 1.50289 1.62358 1.84700 2.45322 2.91485 3.21405 3.24308 3.53223 3.82187 4.08467 4.15205 4.29284 4.42957 4.57883 4.72640 4.74762 4.99731 5.05750 5.13838 5.24222 5.58724 5.71253 5.77017 6.16274 6.31876 6.61868 6.88889 6.95590 7.06996 7.23289 7.50452 9.05023 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.009117 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.727751 B = 3070.565626 C = 3714.001513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.285 3.715 3 N -0.521 5.521 4 C -0.024 4.024 5 C 0.221 3.779 6 N -0.508 5.508 7 C 0.144 3.856 8 C -0.204 4.204 9 C -0.009 4.009 10 C 0.271 3.729 11 H 0.009 0.991 12 N -0.816 5.816 13 C -0.532 4.532 14 H 0.033 0.967 15 C 0.037 3.963 16 N -0.877 5.877 17 Si 0.949 3.051 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.280 1.280 21 N -0.576 5.576 22 H 0.440 0.560 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.118 0.882 26 H 0.206 0.794 27 H 0.153 0.847 28 H 0.329 0.671 29 H 0.313 0.687 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -14.375 -1.777 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.018 3.982 3 N -0.242 5.242 4 C -0.144 4.144 5 C -0.015 4.015 6 N -0.223 5.223 7 C -0.022 4.022 8 C -0.227 4.227 9 C -0.020 4.020 10 C 0.160 3.840 11 H 0.027 0.973 12 N -0.344 5.344 13 C -0.571 4.571 14 H 0.051 0.949 15 C -0.167 4.167 16 N -0.513 5.513 17 Si 0.775 3.225 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.205 1.205 21 N -0.194 5.194 22 H 0.282 0.718 23 H 0.123 0.877 24 H 0.114 0.886 25 H 0.137 0.863 26 H 0.223 0.777 27 H 0.171 0.829 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.799 -13.441 -1.684 14.371 hybrid contribution 0.332 -0.645 0.703 1.010 sum -4.467 -14.086 -0.981 14.810 Atomic orbital electron populations 1.20617 0.79892 1.06368 1.05795 1.24705 0.97535 0.79632 0.96360 1.70418 1.01530 1.29636 1.22648 1.19841 0.93078 0.92484 1.09011 1.19225 0.87419 0.90894 1.03976 1.66510 0.96047 1.40795 1.18963 1.23117 0.95007 0.91257 0.92797 1.21917 0.98277 0.95707 1.06778 1.21493 0.90662 1.00033 0.89847 1.17639 0.89380 0.82277 0.94688 0.97334 1.58940 1.03789 1.67661 1.03980 1.20772 1.53689 0.91527 0.91116 0.94852 1.25630 0.93900 0.96929 1.00206 1.70218 1.47508 1.01498 1.32071 0.85792 0.78480 0.77271 0.80996 1.19488 1.20400 1.20531 1.42573 1.02268 1.10906 1.63690 0.71753 0.87728 0.88625 0.86324 0.77710 0.82932 0.85735 0.87515 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.51 71.24 0.75 -0.46 16 2 C 0.29 8.86 8.08 137.90 1.11 9.98 16 3 N -0.52 -22.94 11.28 -179.82 -2.03 -24.97 16 4 C -0.02 -1.10 6.99 39.52 0.28 -0.82 16 5 C 0.22 8.35 8.46 133.86 1.13 9.48 16 6 N -0.51 -17.74 10.38 -192.74 -2.00 -19.74 16 7 C 0.14 4.49 11.16 84.79 0.95 5.44 16 8 C -0.20 -7.51 9.33 22.34 0.21 -7.30 16 9 C -0.01 -0.40 5.04 -19.50 -0.10 -0.50 16 10 C 0.27 14.53 2.90 43.42 0.13 14.66 16 11 H 0.01 0.55 8.13 -2.39 -0.02 0.53 16 12 N -0.82 -39.26 8.16 -174.95 -1.43 -40.69 16 13 C -0.53 -31.25 8.71 25.60 0.22 -31.02 16 14 H 0.03 2.01 7.74 -2.91 -0.02 1.98 16 15 C 0.04 2.16 5.39 84.65 0.46 2.62 16 16 N -0.88 -53.24 12.77 21.45 0.27 -52.96 16 17 Si 0.95 45.74 29.54 68.60 2.03 47.77 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 N -0.58 -16.54 6.21 -183.86 -1.14 -17.68 16 22 H 0.44 8.46 8.96 -92.71 -0.83 7.63 16 23 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.21 4.25 8.06 -2.91 -0.02 4.23 16 27 H 0.15 4.93 6.42 -2.91 -0.02 4.91 16 28 H 0.33 14.45 7.29 -89.69 -0.65 13.80 16 29 H 0.31 13.45 9.06 -89.70 -0.81 12.63 16 30 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -78.58 264.61 -0.26 -78.84 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.09 Total: 27.36 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 5.13 Total: 2.07 kcal Atomic # 7 Polarization: -149.71 SS G_CDS: -6.33 Total: -156.04 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -78.58 -0.26 -78.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.950 kcal (2) G-P(sol) polarization free energy of solvation -78.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds