Wall clock time and date at job start Mon Mar 30 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47229 * 89.99464 * 3 2 1 5 5 H 1.48498 * 109.47112 * 329.99386 * 3 2 1 6 6 H 1.48502 * 109.47192 * 209.99567 * 3 2 1 7 7 C 1.37878 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99439 * 6.63171 * 7 2 1 9 9 C 1.50695 * 120.00027 * 186.62993 * 7 2 1 10 10 H 1.08999 * 109.47742 * 305.19525 * 9 7 2 11 11 N 1.46902 * 109.47270 * 65.19806 * 9 7 2 12 12 C 1.50709 * 109.46817 * 185.19555 * 9 7 2 13 13 C 1.38097 * 120.33706 * 264.72697 * 12 9 7 14 14 N 1.31857 * 120.58598 * 179.71703 * 13 12 9 15 15 C 1.31700 * 121.64873 * 0.66198 * 14 13 12 16 16 C 1.38718 * 121.01168 * 359.73038 * 15 14 13 17 17 C 1.37888 * 118.93659 * 359.77980 * 16 15 14 18 18 C 1.50336 * 122.80854 * 180.65296 * 17 16 15 19 19 C 1.52824 * 110.46020 * 342.40387 * 18 17 16 20 20 C 1.53314 * 108.48421 * 50.82159 * 19 18 17 21 21 C 1.50464 * 118.54314 * 179.68126 * 16 15 14 22 22 H 0.97003 * 120.00041 * 174.93236 * 1 2 3 23 23 H 1.00896 * 110.99989 * 293.24228 * 11 9 7 24 24 H 1.00899 * 110.99979 * 57.19997 * 11 9 7 25 25 H 1.08000 * 119.70422 * 359.96740 * 13 12 9 26 26 H 1.07998 * 119.50277 * 179.70357 * 15 14 13 27 27 H 1.08996 * 109.31240 * 102.71069 * 18 17 16 28 28 H 1.09002 * 109.30249 * 222.10581 * 18 17 16 29 29 H 1.08996 * 109.63391 * 291.12178 * 19 18 17 30 30 H 1.09000 * 109.63761 * 170.52109 * 19 18 17 31 31 H 1.09000 * 109.62956 * 170.49408 * 20 19 18 32 32 H 1.08991 * 109.79233 * 49.99964 * 20 19 18 33 33 H 1.08999 * 109.30238 * 282.53635 * 21 16 15 34 34 H 1.08989 * 109.30859 * 41.93749 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 1.4001 5 1 1.4465 2.6527 -0.7002 6 1 3.5467 1.4403 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4700 -2.1262 -0.1071 9 6 3.5040 -1.1982 0.1512 10 1 3.9478 -0.5598 -0.6127 11 7 3.8638 -0.6915 1.4823 12 6 4.0208 -2.6050 -0.0074 13 6 4.2445 -3.3952 1.1027 14 7 4.6913 -4.6286 0.9693 15 6 4.9513 -5.1452 -0.2139 16 6 4.7586 -4.4085 -1.3734 17 6 4.2827 -3.1183 -1.2727 18 6 4.0285 -2.2479 -2.4718 19 6 4.7560 -2.8006 -3.6969 20 6 4.4109 -4.2878 -3.8372 21 6 5.0804 -5.0511 -2.6953 22 1 -0.4850 -0.8368 -0.0742 23 1 3.6262 0.2848 1.5740 24 1 3.4270 -1.2397 2.2081 25 1 4.0478 -3.0009 2.0888 26 1 5.3207 -6.1577 -0.2826 27 1 2.9578 -2.2151 -2.6730 28 1 4.3847 -1.2384 -2.2664 29 1 5.8320 -2.6850 -3.5670 30 1 4.4320 -2.2638 -4.5885 31 1 4.7798 -4.6608 -4.7927 32 1 3.3307 -4.4227 -3.7839 33 1 6.1602 -5.0479 -2.8440 34 1 4.7232 -6.0808 -2.6919 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260146017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:23 Heat of formation + Delta-G solvation = 10.602831 kcal Electronic energy + Delta-G solvation = -16455.412376 eV Core-core repulsion = 13965.729900 eV Total energy + Delta-G solvation = -2489.682476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22158 -36.47876 -35.45637 -32.32414 -31.25027 -30.69333 -28.51192 -26.03785 -23.86396 -22.86525 -22.67147 -19.83562 -19.12667 -17.85200 -16.60786 -15.79411 -15.12031 -14.77074 -13.94699 -13.90335 -13.57000 -13.45454 -13.10104 -12.59758 -12.51318 -12.32325 -12.12546 -11.69461 -11.51099 -11.25658 -10.77462 -10.68023 -10.55258 -10.18523 -9.95428 -9.32062 -8.73402 -8.70706 -8.61224 -8.17049 -7.68882 -6.55355 -4.34340 1.76500 1.95038 3.20693 3.28940 3.41587 4.26999 4.41606 4.88317 4.93632 5.05625 5.06905 5.08485 5.34234 5.41236 5.60276 5.62244 5.70929 5.80533 5.93176 5.99618 6.09611 6.15402 6.23829 6.26628 6.34003 6.49640 6.60774 6.70383 6.85365 7.23594 7.38904 7.66053 8.09691 8.21138 8.33745 8.61044 8.72232 9.39567 10.74776 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.009562 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.295582 B = 2927.575846 C = 3468.390871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.031 3.969 3 Si 1.045 2.955 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.616 4.616 8 H 0.056 0.944 9 C 0.209 3.791 10 H 0.056 0.944 11 N -0.853 5.853 12 C -0.070 4.070 13 C 0.091 3.909 14 N -0.491 5.491 15 C 0.068 3.932 16 C -0.137 4.137 17 C -0.037 4.037 18 C -0.080 4.080 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.070 4.070 22 H 0.270 0.730 23 H 0.323 0.677 24 H 0.330 0.670 25 H 0.151 0.849 26 H 0.142 0.858 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.408 -5.595 -5.792 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.874 3.126 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.656 4.656 8 H 0.074 0.926 9 C 0.099 3.901 10 H 0.073 0.927 11 N -0.384 5.384 12 C -0.072 4.072 13 C -0.064 4.064 14 N -0.199 5.199 15 C -0.091 4.091 16 C -0.139 4.139 17 C -0.046 4.046 18 C -0.116 4.116 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.107 4.107 22 H 0.080 0.920 23 H 0.137 0.863 24 H 0.143 0.857 25 H 0.168 0.832 26 H 0.159 0.841 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.084 -4.629 -5.171 12.241 hybrid contribution -1.188 -1.051 -0.608 1.699 sum 8.895 -5.680 -5.779 12.033 Atomic orbital electron populations 1.70796 1.06722 1.30884 1.45099 1.25829 0.96414 1.02355 0.92968 0.83951 0.75372 0.75734 0.77591 1.20628 1.21083 1.20093 1.22570 0.91007 0.95435 1.56538 0.92553 1.18467 0.94725 0.88091 0.88798 0.92681 1.59706 1.66113 1.06631 1.05966 1.21073 0.94885 0.98649 0.92588 1.22409 0.96109 0.88797 0.99082 1.67522 1.11989 1.13588 1.26837 1.22461 0.99584 0.99435 0.87606 1.20356 1.02488 0.94720 0.96358 1.19615 0.96371 0.93506 0.95068 1.20420 1.01855 0.98139 0.91207 1.21587 1.00332 0.95690 0.98031 1.21544 1.01023 0.95612 0.97489 1.20293 1.00438 0.98644 0.91354 0.92001 0.86332 0.85741 0.83184 0.84101 0.89478 0.90267 0.92016 0.91611 0.91860 0.91629 0.91073 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.69 55.43 0.76 -25.83 16 2 C 0.03 0.84 5.46 -17.82 -0.10 0.74 16 3 Si 1.05 23.77 25.54 -169.99 -4.34 19.43 16 4 H -0.28 -5.98 6.93 56.52 0.39 -5.59 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -5.86 6.36 56.52 0.36 -5.50 16 7 C -0.62 -16.32 9.04 -34.44 -0.31 -16.63 16 8 H 0.06 1.67 7.97 -52.49 -0.42 1.25 16 9 C 0.21 4.79 1.95 -70.01 -0.14 4.66 16 10 H 0.06 1.29 4.80 -51.93 -0.25 1.04 16 11 N -0.85 -18.17 8.73 -6.65 -0.06 -18.23 16 12 C -0.07 -1.50 5.02 -104.38 -0.52 -2.02 16 13 C 0.09 1.90 10.44 -17.59 -0.18 1.72 16 14 N -0.49 -9.74 10.36 -13.19 -0.14 -9.88 16 15 C 0.07 1.18 10.80 -17.43 -0.19 0.99 16 16 C -0.14 -2.33 5.73 -104.69 -0.60 -2.93 16 17 C -0.04 -0.72 5.74 -104.63 -0.60 -1.32 16 18 C -0.08 -1.40 5.07 -28.15 -0.14 -1.54 16 19 C -0.12 -1.61 5.98 -26.66 -0.16 -1.77 16 20 C -0.12 -1.48 5.97 -26.67 -0.16 -1.64 16 21 C -0.07 -0.90 5.71 -28.10 -0.16 -1.06 16 22 H 0.27 8.01 8.72 -40.82 -0.36 7.66 16 23 H 0.32 6.83 5.49 -39.29 -0.22 6.62 16 24 H 0.33 6.80 7.36 -39.29 -0.29 6.51 16 25 H 0.15 2.98 6.37 -52.49 -0.33 2.64 16 26 H 0.14 1.98 8.06 -52.49 -0.42 1.55 16 27 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 28 H 0.08 1.44 6.47 -51.93 -0.34 1.10 16 29 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.80 8.13 -51.94 -0.42 0.38 16 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -29.29 267.78 -7.43 -36.72 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -4.42 Total: 14.57 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -3.26 Total: -20.82 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.56 Total: -53.94 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.34 Total: 19.43 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.29 -7.43 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.321 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds