Wall clock time and date at job start Mon Mar 30 2020 03:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47229 * 89.99464 * 3 2 1 5 5 H 1.48498 * 109.47112 * 329.99386 * 3 2 1 6 6 H 1.48502 * 109.47192 * 209.99567 * 3 2 1 7 7 C 1.37878 * 120.00488 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99439 * 6.63171 * 7 2 1 9 9 C 1.50695 * 120.00027 * 186.62993 * 7 2 1 10 10 H 1.08999 * 109.47742 * 305.19525 * 9 7 2 11 11 N 1.46902 * 109.47270 * 65.19806 * 9 7 2 12 12 C 1.50709 * 109.46817 * 185.19555 * 9 7 2 13 13 C 1.38097 * 120.33706 * 264.72697 * 12 9 7 14 14 N 1.31857 * 120.58598 * 179.71703 * 13 12 9 15 15 C 1.31700 * 121.64873 * 0.66198 * 14 13 12 16 16 C 1.38718 * 121.01168 * 359.73038 * 15 14 13 17 17 C 1.37888 * 118.93659 * 359.77980 * 16 15 14 18 18 C 1.50336 * 122.80854 * 180.65296 * 17 16 15 19 19 C 1.52824 * 110.46020 * 342.40387 * 18 17 16 20 20 C 1.53314 * 108.48421 * 50.82159 * 19 18 17 21 21 C 1.50464 * 118.54314 * 179.68126 * 16 15 14 22 22 H 0.97003 * 120.00041 * 174.93236 * 1 2 3 23 23 H 1.00896 * 110.99989 * 293.24228 * 11 9 7 24 24 H 1.00899 * 110.99979 * 57.19997 * 11 9 7 25 25 H 1.08000 * 119.70422 * 359.96740 * 13 12 9 26 26 H 1.07998 * 119.50277 * 179.70357 * 15 14 13 27 27 H 1.08996 * 109.31240 * 102.71069 * 18 17 16 28 28 H 1.09002 * 109.30249 * 222.10581 * 18 17 16 29 29 H 1.08996 * 109.63391 * 291.12178 * 19 18 17 30 30 H 1.09000 * 109.63761 * 170.52109 * 19 18 17 31 31 H 1.09000 * 109.62956 * 170.49408 * 20 19 18 32 32 H 1.08991 * 109.79233 * 49.99964 * 20 19 18 33 33 H 1.08999 * 109.30238 * 282.53635 * 21 16 15 34 34 H 1.08989 * 109.30859 * 41.93749 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 1.4001 5 1 1.4465 2.6527 -0.7002 6 1 3.5467 1.4403 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4700 -2.1262 -0.1071 9 6 3.5040 -1.1982 0.1512 10 1 3.9478 -0.5598 -0.6127 11 7 3.8638 -0.6915 1.4823 12 6 4.0208 -2.6050 -0.0074 13 6 4.2445 -3.3952 1.1027 14 7 4.6913 -4.6286 0.9693 15 6 4.9513 -5.1452 -0.2139 16 6 4.7586 -4.4085 -1.3734 17 6 4.2827 -3.1183 -1.2727 18 6 4.0285 -2.2479 -2.4718 19 6 4.7560 -2.8006 -3.6969 20 6 4.4109 -4.2878 -3.8372 21 6 5.0804 -5.0511 -2.6953 22 1 -0.4850 -0.8368 -0.0742 23 1 3.6262 0.2848 1.5740 24 1 3.4270 -1.2397 2.2081 25 1 4.0478 -3.0009 2.0888 26 1 5.3207 -6.1577 -0.2826 27 1 2.9578 -2.2151 -2.6730 28 1 4.3847 -1.2384 -2.2664 29 1 5.8320 -2.6850 -3.5670 30 1 4.4320 -2.2638 -4.5885 31 1 4.7798 -4.6608 -4.7927 32 1 3.3307 -4.4227 -3.7839 33 1 6.1602 -5.0479 -2.8440 34 1 4.7232 -6.0808 -2.6919 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260146017.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:22 Heat of formation + Delta-G solvation = -9.651579 kcal Electronic energy + Delta-G solvation = -16456.290674 eV Core-core repulsion = 13965.729900 eV Total energy + Delta-G solvation = -2490.560773 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.65617 -37.74498 -37.22677 -34.27901 -32.79392 -31.99894 -29.90974 -27.97310 -25.25541 -24.43167 -24.01904 -21.44545 -20.43168 -19.89278 -18.15164 -17.22003 -16.72239 -16.14892 -15.62144 -15.24012 -15.03474 -14.78639 -14.69097 -14.43089 -14.13646 -13.75342 -13.55327 -13.19873 -12.93591 -12.69488 -12.47619 -11.93085 -11.77434 -11.69891 -11.43467 -11.20808 -10.81298 -10.21655 -10.12142 -9.69102 -9.55664 -8.70448 -6.55648 0.30075 0.43899 1.37216 1.46425 1.61676 2.35452 2.92140 2.96468 3.60192 3.70902 3.77731 3.88711 4.01790 4.09526 4.16903 4.35388 4.44698 4.52145 4.64103 4.75897 4.83162 4.92251 4.95792 5.00706 5.12268 5.20552 5.27061 5.41411 5.44606 5.59520 5.71784 5.86666 5.95019 6.30603 6.40532 6.66621 7.11952 7.26841 8.51998 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.009562 C = 0.008071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.295582 B = 2927.575846 C = 3468.390871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 1.082 2.918 4 H -0.253 1.253 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.606 4.606 8 H 0.009 0.991 9 C 0.219 3.781 10 H 0.054 0.946 11 N -0.842 5.842 12 C -0.103 4.103 13 C 0.074 3.926 14 N -0.506 5.506 15 C 0.068 3.932 16 C -0.131 4.131 17 C -0.054 4.054 18 C -0.079 4.079 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.069 4.069 22 H 0.252 0.748 23 H 0.326 0.674 24 H 0.334 0.666 25 H 0.149 0.851 26 H 0.181 0.819 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.975 -6.398 -7.072 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.216 4.216 3 Si 0.903 3.097 4 H -0.178 1.178 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.646 4.646 8 H 0.027 0.973 9 C 0.108 3.892 10 H 0.071 0.929 11 N -0.373 5.373 12 C -0.105 4.105 13 C -0.080 4.080 14 N -0.215 5.215 15 C -0.091 4.091 16 C -0.133 4.133 17 C -0.062 4.062 18 C -0.116 4.116 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.106 4.106 22 H 0.061 0.939 23 H 0.140 0.860 24 H 0.146 0.854 25 H 0.166 0.834 26 H 0.198 0.802 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.662 -5.453 -6.433 15.213 hybrid contribution -1.987 -0.965 -0.238 2.222 sum 10.675 -6.417 -6.671 14.129 Atomic orbital electron populations 1.70932 1.08045 1.29790 1.48170 1.27246 0.96266 1.06103 0.92008 0.83523 0.75092 0.71710 0.79374 1.17830 1.21396 1.17618 1.22627 0.93271 0.93385 1.55295 0.97259 1.18234 0.91953 0.89632 0.89345 0.92866 1.59649 1.65636 1.06788 1.05233 1.21089 0.97108 0.98169 0.94167 1.22404 0.97154 0.89530 0.98928 1.67551 1.12506 1.13014 1.28391 1.23191 0.98039 1.00911 0.86923 1.20859 1.00297 0.93556 0.98620 1.19962 0.96546 0.95000 0.94710 1.20401 1.00598 0.97770 0.92807 1.21591 1.00456 0.96694 0.96306 1.21570 1.00189 0.94638 0.99119 1.20448 1.02121 0.99304 0.88710 0.93914 0.86049 0.85366 0.83413 0.80160 0.92326 0.91468 0.90695 0.90077 0.88362 0.93274 0.88454 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.69 21.45 0.29 -56.96 16 2 C -0.02 -0.96 5.46 84.66 0.46 -0.50 16 3 Si 1.08 47.61 25.54 68.60 1.75 49.36 16 4 H -0.25 -10.08 6.93 99.48 0.69 -9.39 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.25 -10.07 6.36 99.48 0.63 -9.44 16 7 C -0.61 -33.45 9.04 25.60 0.23 -33.22 16 8 H 0.01 0.57 7.97 -2.91 -0.02 0.55 16 9 C 0.22 10.18 1.95 43.42 0.08 10.26 16 10 H 0.05 2.50 4.80 -2.39 -0.01 2.49 16 11 N -0.84 -35.65 8.73 -174.95 -1.53 -37.18 16 12 C -0.10 -4.49 5.02 -19.70 -0.10 -4.58 16 13 C 0.07 3.12 10.44 84.66 0.88 4.01 16 14 N -0.51 -19.59 10.36 -195.64 -2.03 -21.62 16 15 C 0.07 2.19 10.80 84.83 0.92 3.11 16 16 C -0.13 -4.15 5.73 -19.91 -0.11 -4.27 16 17 C -0.05 -2.06 5.74 -19.87 -0.11 -2.18 16 18 C -0.08 -2.75 5.07 29.68 0.15 -2.60 16 19 C -0.11 -2.77 5.98 30.64 0.18 -2.59 16 20 C -0.12 -2.51 5.97 30.64 0.18 -2.32 16 21 C -0.07 -1.46 5.71 29.71 0.17 -1.29 16 22 H 0.25 15.87 8.72 -92.71 -0.81 15.06 16 23 H 0.33 13.38 5.49 -89.70 -0.49 12.89 16 24 H 0.33 13.87 7.36 -89.69 -0.66 13.21 16 25 H 0.15 6.02 6.37 -2.91 -0.02 6.00 16 26 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.07 2.45 6.47 -2.39 -0.02 2.44 16 29 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.64 8.13 -2.39 -0.02 1.62 16 Total: -1.00 -66.28 267.78 1.27 -65.01 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.16 Total: 37.57 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 2.94 Total: -36.18 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -3.26 Total: -115.76 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.75 Total: 49.36 kcal Total: -66.28 1.27 -65.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146017.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.357 kcal (2) G-P(sol) polarization free energy of solvation -66.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds