Wall clock time and date at job start Mon Mar 30 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32509 * 125.17589 * 2 1 4 4 C 1.32843 * 109.67678 * 180.02562 * 3 2 1 5 5 C 1.40661 * 132.89051 * 180.31529 * 4 3 2 6 6 C 1.36190 * 119.26540 * 180.17065 * 5 4 3 7 7 C 1.50701 * 120.18611 * 179.76509 * 6 5 4 8 8 H 1.08996 * 109.47532 * 19.72215 * 7 6 5 9 9 N 1.46900 * 109.47152 * 139.72653 * 7 6 5 10 10 C 1.50703 * 109.46789 * 259.72387 * 7 6 5 11 11 H 1.08006 * 120.00159 * 0.02562 * 10 7 6 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.40274 * 119.62278 * 359.48613 * 6 5 4 19 19 C 1.35186 * 120.21062 * 0.27640 * 18 6 5 20 20 N 1.35934 * 120.57168 * 359.97438 * 19 18 6 21 21 N 1.31245 * 125.18151 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.47515 * 269.97882 * 1 2 3 23 23 H 1.08999 * 109.47742 * 29.98452 * 1 2 3 24 24 H 1.09003 * 109.47061 * 149.98119 * 1 2 3 25 25 H 1.07995 * 120.36774 * 359.93954 * 5 4 3 26 26 H 1.00895 * 110.99794 * 296.04131 * 9 7 6 27 27 H 1.00897 * 111.00054 * 59.99627 * 9 7 6 28 28 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 29 29 H 1.07997 * 119.89556 * 180.25032 * 18 6 5 30 30 H 1.08004 * 119.71202 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0831 0.0000 4 6 3.5505 0.7281 -0.0006 5 6 4.7484 1.4654 0.0049 6 6 5.9381 0.8026 -0.0010 7 6 7.2340 1.5717 -0.0008 8 1 7.0537 2.5875 0.3511 9 7 8.1967 0.9089 0.8892 10 6 7.7919 1.6164 -1.4000 11 1 7.2609 1.1363 -2.2087 12 6 8.9802 2.2703 -1.6479 13 7 9.6266 2.8554 -0.6633 14 14 9.6712 2.3263 -3.3824 15 1 10.5577 1.1549 -3.6002 16 1 10.4504 3.5773 -3.5648 17 1 8.5552 2.2912 -4.3614 18 6 5.9503 -0.6001 -0.0015 19 6 4.7881 -1.2905 -0.0017 20 7 3.5959 -0.6374 -0.0010 21 7 2.2632 -1.0727 -0.0005 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8901 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 4.7250 2.5451 0.0099 26 1 7.8745 0.9235 1.8453 27 1 8.3807 -0.0350 0.5840 28 1 9.2675 2.8266 0.2373 29 1 6.8913 -1.1302 -0.0021 30 1 4.8069 -2.3704 -0.0024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260170310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:37 Heat of formation + Delta-G solvation = 110.322884 kcal Electronic energy + Delta-G solvation = -15544.236226 eV Core-core repulsion = 12955.337592 eV Total energy + Delta-G solvation = -2588.898634 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.37293 -38.22434 -35.19488 -32.90868 -31.93726 -30.91757 -29.55395 -28.17038 -25.91600 -23.41810 -22.99306 -21.10870 -20.44750 -17.60607 -17.19155 -16.21456 -15.99114 -15.54388 -14.65348 -14.36675 -13.73627 -13.49129 -13.38043 -13.25228 -12.63982 -12.52524 -12.14208 -11.66685 -11.36188 -11.18119 -10.81044 -10.71475 -10.44174 -10.12390 -9.83887 -9.24440 -8.65701 -8.45325 -7.87672 -7.74898 -6.32141 -4.17831 1.02363 1.26850 2.35813 2.87879 3.41808 3.45157 3.60489 3.74361 4.13898 4.30627 4.51077 4.89956 5.02757 5.28956 5.31813 5.40715 5.45988 5.55914 5.70931 5.78282 5.91016 6.18452 6.46873 6.54267 6.60816 6.68457 6.97520 7.07175 7.74728 8.07889 8.23010 8.46313 8.54783 8.89584 9.65999 11.08271 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.042479 B = 0.006198 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.986688 B = 4516.290192 C = 4682.333768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.249 3.751 3 N -0.560 5.560 4 C 0.294 3.706 5 C -0.127 4.127 6 C -0.011 4.011 7 C 0.238 3.762 8 H 0.049 0.951 9 N -0.827 5.827 10 C -0.614 4.614 11 H 0.049 0.951 12 C 0.042 3.958 13 N -0.885 5.885 14 Si 1.067 2.933 15 H -0.288 1.288 16 H -0.284 1.284 17 H -0.290 1.290 18 C -0.137 4.137 19 C 0.096 3.904 20 N -0.291 5.291 21 N -0.362 5.362 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.306 0.694 27 H 0.328 0.672 28 H 0.291 0.709 29 H 0.157 0.843 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 -6.826 2.321 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.031 4.031 3 N -0.292 5.292 4 C 0.043 3.957 5 C -0.150 4.150 6 C -0.021 4.021 7 C 0.129 3.871 8 H 0.067 0.933 9 N -0.355 5.355 10 C -0.652 4.652 11 H 0.067 0.933 12 C -0.169 4.169 13 N -0.518 5.518 14 Si 0.896 3.104 15 H -0.215 1.215 16 H -0.210 1.210 17 H -0.217 1.217 18 C -0.160 4.160 19 C -0.031 4.031 20 N -0.064 5.064 21 N -0.195 5.195 22 H 0.102 0.898 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.169 0.831 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.103 0.897 29 H 0.174 0.826 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -9.056 -6.064 1.220 10.967 hybrid contribution -1.809 -1.404 1.003 2.500 sum -10.865 -7.468 2.223 13.371 Atomic orbital electron populations 1.20104 0.83810 1.04005 1.03678 1.24347 0.98257 0.85843 0.94659 1.70755 0.98385 1.29184 1.30894 1.21855 0.94327 0.82447 0.97082 1.20190 0.86770 1.00955 1.07077 1.21729 0.98654 0.93881 0.87882 1.18504 0.81526 0.92164 0.94883 0.93312 1.59435 1.49223 1.23189 1.03632 1.21625 1.10837 1.41977 0.90790 0.93278 1.25639 0.93618 0.92556 1.05038 1.70540 1.39893 1.38308 1.03077 0.83585 0.75715 0.76764 0.74360 1.21489 1.20969 1.21666 1.20933 0.96995 0.94847 1.03221 1.21415 0.81127 0.99143 1.01450 1.47509 1.05781 1.07332 1.45804 1.78334 0.83835 1.21381 1.35967 0.89782 0.89434 0.90035 0.83073 0.88355 0.85877 0.89650 0.82564 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 36.01 0.38 -0.26 16 2 C 0.25 4.23 8.09 -157.05 -1.27 2.96 16 3 N -0.56 -10.84 11.25 -10.16 -0.11 -10.95 16 4 C 0.29 5.75 7.88 -156.33 -1.23 4.52 16 5 C -0.13 -2.44 9.72 -39.40 -0.38 -2.83 16 6 C -0.01 -0.21 4.87 -104.59 -0.51 -0.72 16 7 C 0.24 5.26 2.47 -70.01 -0.17 5.09 16 8 H 0.05 1.17 7.86 -51.93 -0.41 0.76 16 9 N -0.83 -16.64 7.62 -6.65 -0.05 -16.69 16 10 C -0.61 -15.74 8.71 -34.44 -0.30 -16.04 16 11 H 0.05 1.29 7.74 -52.48 -0.41 0.88 16 12 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 13 N -0.88 -25.14 13.51 55.43 0.75 -24.40 16 14 Si 1.07 24.07 29.90 -169.99 -5.08 18.99 16 15 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 18 C -0.14 -2.21 9.25 -39.90 -0.37 -2.58 16 19 C 0.10 1.48 11.20 -16.82 -0.19 1.29 16 20 N -0.29 -5.32 3.90 -12.34 -0.05 -5.37 16 21 N -0.36 -6.54 12.78 32.38 0.41 -6.12 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.15 2.81 8.03 -52.49 -0.42 2.38 16 26 H 0.31 5.35 9.06 -39.29 -0.36 4.99 16 27 H 0.33 6.14 7.37 -39.29 -0.29 5.85 16 28 H 0.29 8.20 6.39 -40.82 -0.26 7.93 16 29 H 0.16 2.21 6.72 -52.49 -0.35 1.86 16 30 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 264.04 15.07 3.98 3.98 Total: -1.00 -31.34 264.04 -7.28 -38.62 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -2.98 Total: 9.47 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -4.14 Total: -7.53 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: 0.95 Total: -63.52 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.99 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.34 -7.28 -38.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.942 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds