Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32610 * 125.18845 * 2 1 4 4 C 1.32820 * 109.76454 * 180.02562 * 3 2 1 5 5 N 1.33815 * 132.51116 * 179.97438 * 4 3 2 6 6 C 1.31354 * 120.86915 * 179.97438 * 5 4 3 7 7 C 1.40044 * 120.30950 * 0.02727 * 6 5 4 8 8 C 1.50703 * 120.37968 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47088 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46654 * 59.99984 * 8 7 6 11 11 C 1.50701 * 109.47151 * 300.00402 * 8 7 6 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 8 7 13 13 C 1.37871 * 119.99694 * 180.27762 * 11 8 7 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 8 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 8 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.35773 * 119.24108 * 0.22700 * 7 6 5 20 20 N 1.35978 * 119.02254 * 359.50539 * 19 7 6 21 21 N 1.31183 * 125.18597 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47508 * 89.97507 * 1 2 3 23 23 H 1.09003 * 109.47316 * 209.97537 * 1 2 3 24 24 H 1.08997 * 109.47663 * 329.97237 * 1 2 3 25 25 H 1.07990 * 119.84591 * 180.02562 * 6 5 4 26 26 H 1.08996 * 109.47069 * 60.00420 * 10 8 7 27 27 H 1.09004 * 109.46658 * 179.97438 * 10 8 7 28 28 H 1.08995 * 109.47438 * 299.99560 * 10 8 7 29 29 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 30 30 H 1.08002 * 120.49091 * 179.72733 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2711 1.0838 0.0000 4 6 3.5515 0.7305 -0.0006 5 7 4.6855 1.4409 -0.0012 6 6 5.8552 0.8432 -0.0012 7 6 5.9344 -0.5549 -0.0010 8 6 7.2756 -1.2423 -0.0015 9 1 7.1302 -2.3226 -0.0009 10 6 8.0589 -0.8328 1.2473 11 6 8.0461 -0.8393 -1.2324 12 1 7.6082 -0.1543 -1.9434 13 6 9.3074 -1.3500 -1.4539 14 7 9.8405 -2.1844 -0.5883 15 14 10.2594 -0.8566 -2.9835 16 1 10.4622 0.6146 -2.9873 17 1 11.5790 -1.5376 -2.9864 18 1 9.4942 -1.2540 -4.1925 19 6 4.7891 -1.2842 -0.0056 20 7 3.5941 -0.6355 0.0001 21 7 2.2629 -1.0721 -0.0005 22 1 -0.3634 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3634 0.8897 0.5142 25 1 6.7600 1.4328 -0.0013 26 1 7.5017 -1.1243 2.1376 27 1 9.0288 -1.3303 1.2472 28 1 8.2044 0.2474 1.2471 29 1 10.7277 -2.5439 -0.7444 30 1 4.8267 -2.3635 -0.0100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260186616.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = 121.250563 kcal Electronic energy + Delta-G solvation = -15552.171113 eV Core-core repulsion = 12963.746339 eV Total energy + Delta-G solvation = -2588.424774 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.50661 -38.74738 -34.92978 -34.10159 -32.13218 -30.87097 -29.60609 -27.73246 -25.38139 -24.38688 -23.33679 -21.09213 -20.30543 -17.96161 -17.55887 -16.36681 -16.09092 -15.51390 -14.74253 -13.70297 -13.61383 -13.48928 -13.01096 -12.86877 -12.55116 -12.25853 -12.12628 -11.77953 -11.45244 -11.08171 -10.92159 -10.61591 -10.45617 -10.19295 -9.87194 -9.55694 -9.30465 -8.96751 -8.59836 -8.16542 -6.24853 -4.34888 0.85987 1.19644 2.28012 2.84181 3.20059 3.25684 3.28662 3.62579 3.83700 4.24539 4.28879 4.84327 4.88980 5.07994 5.24815 5.46877 5.48470 5.69525 5.81962 5.90924 6.29931 6.45511 6.56283 6.59493 6.64033 6.85777 6.89406 7.36741 7.58684 7.79128 7.84087 8.04561 8.25254 8.66494 9.32779 10.80464 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.047391 B = 0.006065 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.683178 B = 4615.699404 C = 4701.674859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.256 3.744 3 N -0.541 5.541 4 C 0.432 3.568 5 N -0.470 5.470 6 C 0.226 3.774 7 C -0.122 4.122 8 C 0.089 3.911 9 H 0.045 0.955 10 C -0.137 4.137 11 C -0.523 4.523 12 H 0.059 0.941 13 C 0.070 3.930 14 N -0.884 5.884 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.130 3.870 20 N -0.315 5.315 21 N -0.351 5.351 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.192 0.808 26 H 0.012 0.988 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 1.558 1.973 9.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.025 4.025 3 N -0.276 5.276 4 C 0.072 3.928 5 N -0.185 5.185 6 C 0.042 3.958 7 C -0.128 4.128 8 C 0.069 3.931 9 H 0.063 0.937 10 C -0.194 4.194 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.133 4.133 14 N -0.521 5.521 15 Si 0.724 3.276 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.006 4.006 20 N -0.092 5.092 21 N -0.186 5.186 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.209 0.791 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -9.427 2.004 2.014 9.846 hybrid contribution 0.998 -0.685 -0.902 1.509 sum -8.429 1.319 1.112 8.604 Atomic orbital electron populations 1.20125 0.83389 1.04131 1.03908 1.24372 0.98331 0.85393 0.94383 1.70629 0.96913 1.28655 1.31378 1.22744 0.93640 0.78932 0.97492 1.68076 0.95567 1.36143 1.18727 1.23711 0.94361 0.92975 0.84772 1.21543 0.97578 0.94874 0.98836 1.17821 0.83868 0.95506 0.95866 0.93660 1.21850 1.03052 0.99930 0.94597 1.20952 1.00620 1.28872 1.05679 0.92233 1.24908 0.97301 0.94500 0.96635 1.69844 1.16701 1.30411 1.35169 0.86573 0.79033 0.78974 0.83025 1.19922 1.21112 1.20193 1.22129 0.79972 1.00451 0.98030 1.48610 1.06395 1.09152 1.45009 1.78371 0.83846 1.21199 1.35142 0.89568 0.89785 0.89332 0.79119 0.96864 0.88850 0.94724 0.92453 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 36.00 0.38 -0.24 16 2 C 0.26 4.39 8.09 -157.01 -1.27 3.12 16 3 N -0.54 -10.73 11.25 -11.80 -0.13 -10.86 16 4 C 0.43 8.84 8.99 -323.14 -2.91 5.93 16 5 N -0.47 -9.24 10.48 -13.82 -0.14 -9.39 16 6 C 0.23 4.07 10.01 -17.08 -0.17 3.90 16 7 C -0.12 -2.27 4.70 -104.83 -0.49 -2.76 16 8 C 0.09 1.88 2.48 -92.92 -0.23 1.64 16 9 H 0.05 1.01 7.88 -51.93 -0.41 0.60 16 10 C -0.14 -2.76 8.79 37.16 0.33 -2.43 16 11 C -0.52 -12.36 8.26 -34.44 -0.28 -12.64 16 12 H 0.06 1.40 7.62 -52.49 -0.40 1.00 16 13 C 0.07 1.71 5.31 -17.82 -0.09 1.61 16 14 N -0.88 -22.44 11.33 55.43 0.63 -21.82 16 15 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 C 0.13 2.35 10.94 -16.60 -0.18 2.17 16 20 N -0.31 -6.13 3.91 -13.84 -0.05 -6.18 16 21 N -0.35 -6.55 12.78 32.39 0.41 -6.13 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.19 3.04 7.63 -52.49 -0.40 2.64 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 2.13 6.08 -51.93 -0.32 1.81 16 28 H 0.03 0.65 7.44 -51.93 -0.39 0.26 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.18 2.76 7.95 -52.49 -0.42 2.35 16 LS Contribution 264.16 15.07 3.98 3.98 Total: -1.00 -28.41 264.16 -8.41 -36.82 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.15 Total: -1.08 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -4.93 Total: 0.29 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.71 Total: -54.39 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.41 -8.41 -36.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260186616.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.068 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds