Wall clock time and date at job start Mon Mar 30 2020 03:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48491 * 109.47101 * 269.99813 * 3 2 1 5 5 H 1.48498 * 109.46810 * 30.00250 * 3 2 1 6 6 H 1.48504 * 109.46773 * 149.99969 * 3 2 1 7 7 C 1.37873 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00204 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.34724 * 57.86139 * 9 7 2 11 11 C 1.54589 * 110.30965 * 295.71883 * 9 7 2 12 12 C 1.54936 * 102.92215 * 263.04076 * 11 9 7 13 13 N 1.48810 * 103.34874 * 322.69171 * 12 11 9 14 14 C 1.47895 * 105.67852 * 38.97626 * 13 12 11 15 15 H 1.09000 * 109.92298 * 94.35351 * 14 13 12 16 16 C 1.53004 * 109.92086 * 215.45435 * 14 13 12 17 17 C 1.50700 * 109.46950 * 293.19765 * 16 14 13 18 18 C 1.38224 * 119.62022 * 124.99617 * 17 16 14 19 19 C 1.38630 * 119.16347 * 179.97438 * 18 17 16 20 20 C 1.38675 * 118.41860 * 0.25530 * 19 18 17 21 21 C 1.38180 * 119.16315 * 359.51902 * 20 19 18 22 22 N 1.31856 * 119.61823 * 305.02052 * 17 16 14 23 23 H 0.97002 * 120.00213 * 0.02562 * 1 2 3 24 24 H 1.09000 * 110.72775 * 21.39862 * 11 9 7 25 25 H 1.09002 * 110.72334 * 144.50810 * 11 9 7 26 26 H 1.09003 * 110.67023 * 81.02294 * 12 11 9 27 27 H 1.09000 * 110.66813 * 203.98529 * 12 11 9 28 28 H 1.00895 * 110.95834 * 278.56823 * 13 12 11 29 29 H 1.08998 * 109.47407 * 173.19730 * 16 14 13 30 30 H 1.08998 * 109.46608 * 53.19005 * 16 14 13 31 31 H 1.07997 * 120.41892 * 0.02562 * 18 17 16 32 32 H 1.08002 * 120.78834 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.41613 * 179.75147 * 20 19 18 34 34 H 1.07999 * 119.62145 * 180.20788 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5903 -2.5554 -0.8657 11 6 0.4384 -2.6496 1.3059 12 6 1.3641 -3.5211 2.1914 13 7 1.9704 -4.4731 1.2216 14 6 2.2345 -3.6842 -0.0011 15 1 3.2602 -3.3154 0.0091 16 6 2.0051 -4.5512 -1.2407 17 6 3.0442 -5.6416 -1.2903 18 6 2.6452 -6.9622 -1.3757 19 6 3.6090 -7.9575 -1.4214 20 6 4.9442 -7.5860 -1.3737 21 6 5.2675 -6.2449 -1.2932 22 7 4.3235 -5.3248 -1.2513 23 1 -0.4850 0.8400 -0.0004 24 1 0.2667 -1.6772 1.7676 25 1 -0.5074 -3.1570 1.1156 26 1 2.1354 -2.9098 2.6598 27 1 0.7851 -4.0528 2.9465 28 1 1.3437 -5.2400 1.0289 29 1 2.0832 -3.9339 -2.1355 30 1 1.0119 -4.9978 -1.1928 31 1 1.5958 -7.2154 -1.4074 32 1 3.3267 -8.9979 -1.4877 33 1 5.7216 -8.3350 -1.4031 34 1 6.3050 -5.9470 -1.2591 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260205435.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:00 Heat of formation + Delta-G solvation = 27.123608 kcal Electronic energy + Delta-G solvation = -15992.135886 eV Core-core repulsion = 13503.169805 eV Total energy + Delta-G solvation = -2488.966082 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97772 -37.75285 -33.04156 -32.45255 -32.02578 -29.14183 -28.67611 -25.70495 -23.84399 -23.26162 -21.60777 -20.40228 -18.90216 -16.77262 -16.10862 -15.97620 -15.37657 -14.79821 -14.62253 -13.84122 -13.53151 -13.18943 -13.08187 -12.62020 -12.44211 -11.90418 -11.51128 -11.28326 -11.08161 -10.87642 -10.51934 -10.35831 -9.94297 -9.83255 -9.67599 -9.43201 -9.01810 -8.78093 -8.59994 -8.32865 -7.64707 -5.98098 -4.00980 1.35805 1.51069 3.33738 3.40241 3.44982 4.06480 4.47647 4.60019 4.91256 4.99805 5.17954 5.25778 5.33119 5.35800 5.72881 5.77836 5.91934 5.94827 6.07437 6.30496 6.34012 6.39679 6.42609 6.52274 6.69726 6.91518 6.99681 7.12139 7.29392 7.66865 7.68732 7.86059 7.98093 8.24245 8.34938 8.50975 9.02350 9.63052 11.10662 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.006629 C = 0.006069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.873712 B = 4222.547496 C = 4612.710307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.029 3.971 10 H 0.030 0.970 11 C -0.132 4.132 12 C 0.043 3.957 13 N -0.675 5.675 14 C 0.085 3.915 15 H 0.090 0.910 16 C -0.076 4.076 17 C 0.159 3.841 18 C -0.178 4.178 19 C -0.076 4.076 20 C -0.193 4.193 21 C 0.103 3.897 22 N -0.471 5.471 23 H 0.259 0.741 24 H 0.079 0.921 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.316 0.684 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -13.587 -1.831 14.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.009 3.991 10 H 0.048 0.952 11 C -0.172 4.172 12 C -0.086 4.086 13 N -0.302 5.302 14 C -0.025 4.025 15 H 0.108 0.892 16 C -0.114 4.114 17 C 0.021 3.979 18 C -0.198 4.198 19 C -0.102 4.102 20 C -0.213 4.213 21 C -0.055 4.055 22 N -0.180 5.180 23 H 0.068 0.932 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.130 0.870 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.237 -12.587 -1.496 13.715 hybrid contribution -0.761 0.129 -0.420 0.879 sum 4.476 -12.458 -1.916 13.376 Atomic orbital electron populations 1.69982 1.05879 1.26380 1.50825 1.24977 0.94816 0.99027 0.95310 0.86641 0.79980 0.83619 0.78088 1.20740 1.21383 1.19854 1.21208 0.92815 0.90138 1.50008 0.92448 1.19878 0.92767 0.92581 0.93889 0.95155 1.22957 0.95763 0.99834 0.98622 1.23097 0.96761 0.93948 0.94796 1.63189 1.46175 1.09981 1.10840 1.22604 1.02070 0.92197 0.85631 0.89226 1.20999 0.94330 0.94717 1.01350 1.21407 0.91818 0.93271 0.91371 1.21974 1.00538 0.93697 1.03554 1.21476 0.93074 0.99467 0.96219 1.22017 0.96969 0.97832 1.04525 1.22738 0.98917 0.89058 0.94740 1.67522 1.00993 1.38068 1.11416 0.93169 0.90222 0.95280 0.91009 0.93242 0.87032 0.89231 0.91137 0.85279 0.85493 0.85502 0.83271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 12.15 55.43 0.67 -24.97 16 2 C 0.06 1.66 5.09 -17.82 -0.09 1.57 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.50 -13.88 8.49 -34.44 -0.29 -14.17 16 8 H 0.06 1.60 7.34 -52.49 -0.39 1.22 16 9 C 0.03 0.71 2.51 -90.41 -0.23 0.48 16 10 H 0.03 0.80 7.69 -51.93 -0.40 0.41 16 11 C -0.13 -3.08 6.17 -24.87 -0.15 -3.24 16 12 C 0.04 0.88 7.55 -1.74 -0.01 0.86 16 13 N -0.68 -13.20 7.20 -102.92 -0.74 -13.94 16 14 C 0.08 1.79 2.95 -66.64 -0.20 1.59 16 15 H 0.09 2.15 7.05 -51.93 -0.37 1.78 16 16 C -0.08 -1.35 4.75 -27.88 -0.13 -1.49 16 17 C 0.16 2.63 5.97 -82.59 -0.49 2.14 16 18 C -0.18 -2.41 9.71 -39.44 -0.38 -2.79 16 19 C -0.08 -0.89 10.18 -39.27 -0.40 -1.29 16 20 C -0.19 -2.26 10.11 -39.44 -0.40 -2.66 16 21 C 0.10 1.44 11.18 -17.55 -0.20 1.24 16 22 N -0.47 -8.23 9.79 -9.47 -0.09 -8.32 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.08 2.09 6.77 -51.93 -0.35 1.74 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.32 5.55 8.32 -39.29 -0.33 5.23 16 29 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 30 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 31 H 0.13 1.47 7.95 -52.49 -0.42 1.05 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -30.06 282.57 -8.64 -38.70 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.74 Total: 5.46 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -2.98 Total: -17.75 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.16 Total: -47.23 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.06 -8.64 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260205435.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.822 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds