Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38379 * 126.39245 * 2 1 4 4 C 1.38345 * 134.92705 * 359.97208 * 3 2 1 5 5 N 1.31967 * 120.23418 * 180.02562 * 4 3 2 6 6 C 1.32224 * 122.29857 * 359.97438 * 5 4 3 7 7 C 1.36635 * 121.44924 * 0.02574 * 6 5 4 8 8 C 1.39979 * 118.83165 * 359.95613 * 7 6 5 9 9 N 1.35271 * 134.63333 * 180.32280 * 8 7 6 10 10 C 1.31196 * 109.62486 * 180.12407 * 9 8 7 11 11 N 1.37755 * 125.04872 * 179.86469 * 10 9 8 12 12 C 1.46499 * 119.99944 * 359.70335 * 11 10 9 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 H 1.09007 * 109.46793 * 270.00475 * 1 2 3 22 22 H 1.09000 * 109.47000 * 29.99788 * 1 2 3 23 23 H 1.08994 * 109.47443 * 149.99982 * 1 2 3 24 24 H 1.07997 * 119.88163 * 0.03032 * 4 3 2 25 25 H 1.08001 * 119.27717 * 180.02562 * 6 5 4 26 26 H 1.08005 * 120.58694 * 179.97438 * 7 6 5 27 27 H 0.97000 * 119.99636 * 179.69505 * 11 10 9 28 28 H 1.09002 * 109.47391 * 59.99612 * 12 11 10 29 29 H 1.09001 * 109.46813 * 299.99668 * 12 11 10 30 30 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2860 1.1139 0.0000 4 6 2.0772 2.4815 -0.0005 5 7 3.1040 3.3105 -0.0008 6 6 4.3558 2.8847 -0.0002 7 6 4.6553 1.5515 0.0003 8 6 3.6068 0.6241 0.0011 9 7 3.5327 -0.7266 0.0071 10 6 2.2747 -1.0989 0.0019 11 7 1.8362 -2.4048 0.0031 12 6 2.8057 -3.5030 0.0040 13 6 2.0730 -4.8199 0.0058 14 1 0.9932 -4.8370 0.0059 15 6 2.7813 -6.0029 0.0064 16 7 2.1418 -7.1521 0.0075 17 14 4.6490 -5.9732 0.0056 18 1 5.1445 -5.9644 1.4056 19 1 5.1629 -7.1783 -0.6936 20 1 5.1245 -4.7536 -0.6955 21 1 -0.3633 0.0001 1.0278 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8899 -0.5138 24 1 1.0703 2.8721 -0.0005 25 1 5.1592 3.6064 -0.0001 26 1 5.6829 1.2191 0.0003 27 1 0.8854 -2.5971 0.0034 28 1 3.4315 -3.4346 0.8939 29 1 3.4313 -3.4361 -0.8861 30 1 2.6400 -7.9843 0.0083 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260266460.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 92.281472 kcal Electronic energy + Delta-G solvation = -15393.398358 eV Core-core repulsion = 12803.717390 eV Total energy + Delta-G solvation = -2589.680968 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.96259 -38.42433 -35.33626 -34.13680 -32.60026 -30.75964 -29.64311 -27.63614 -26.89327 -23.08656 -22.76509 -21.75586 -20.12186 -18.14172 -17.29043 -16.77926 -15.92914 -15.88965 -15.16417 -14.69033 -14.14259 -13.79838 -13.56832 -13.42754 -13.33680 -12.76534 -12.47835 -12.17650 -11.88708 -11.04753 -10.90654 -10.32930 -10.04155 -9.81834 -9.61168 -9.56708 -9.30638 -8.77055 -8.17632 -7.27516 -6.30285 -4.34089 1.17088 1.61624 2.47489 3.21728 3.25085 3.29457 3.37407 3.79985 4.16560 4.26369 4.50198 4.60376 4.72006 5.05232 5.08868 5.13878 5.14769 5.33723 5.52469 5.73412 6.01808 6.27512 6.41076 6.60689 6.85587 6.93649 6.96598 7.24363 7.50697 7.88837 8.19619 8.29678 8.48345 8.68826 9.28050 10.81378 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.040798 B = 0.006250 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.149990 B = 4478.683398 C = 5144.385905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.519 5.519 3 C -0.029 4.029 4 C 0.131 3.869 5 N -0.494 5.494 6 C 0.076 3.924 7 C -0.144 4.144 8 C 0.131 3.869 9 N -0.556 5.556 10 C 0.569 3.431 11 N -0.678 5.678 12 C 0.242 3.758 13 C -0.549 4.549 14 H 0.079 0.921 15 C 0.081 3.919 16 N -0.890 5.890 17 Si 0.876 3.124 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.258 1.258 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.147 0.853 25 H 0.154 0.846 26 H 0.134 0.866 27 H 0.407 0.593 28 H 0.024 0.976 29 H 0.029 0.971 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 15.351 -0.115 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.219 5.219 3 C -0.139 4.139 4 C -0.034 4.034 5 N -0.205 5.205 6 C -0.076 4.076 7 C -0.167 4.167 8 C 0.003 3.997 9 N -0.289 5.289 10 C 0.213 3.787 11 N -0.315 5.315 12 C 0.120 3.880 13 C -0.587 4.587 14 H 0.097 0.903 15 C -0.123 4.123 16 N -0.526 5.526 17 Si 0.702 3.298 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.182 1.182 21 H 0.091 0.909 22 H 0.103 0.897 23 H 0.103 0.897 24 H 0.164 0.836 25 H 0.171 0.829 26 H 0.152 0.848 27 H 0.243 0.757 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.895 15.348 -0.113 15.374 hybrid contribution -0.146 -0.802 0.023 0.816 sum -1.041 14.546 -0.090 14.583 Atomic orbital electron populations 1.21890 0.76448 1.04433 1.03270 1.44931 1.06570 1.04144 1.66249 1.19694 0.92111 0.90206 1.11876 1.21461 0.98369 0.85246 0.98374 1.67720 0.99484 1.37587 1.15757 1.21939 0.93543 0.93404 0.98706 1.20854 0.98635 0.92037 1.05217 1.19128 0.91880 0.90545 0.98154 1.70791 1.13978 1.09564 1.34549 1.20083 0.84795 0.82886 0.90973 1.44232 1.10642 0.98904 1.77721 1.19561 0.88160 0.83045 0.97247 1.21008 0.95329 0.88233 1.54100 0.90274 1.24742 0.98998 0.94962 0.93647 1.69868 1.36311 0.97566 1.48898 0.86819 0.85211 0.78530 0.79207 1.19726 1.20820 1.18211 0.90935 0.89698 0.89738 0.83605 0.82888 0.84792 0.75681 0.95778 0.95338 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.97 59.84 0.66 1.48 16 2 N -0.52 -7.98 3.23 -122.47 -0.40 -8.37 16 3 C -0.03 -0.46 6.92 -83.87 -0.58 -1.04 16 4 C 0.13 1.82 11.23 -17.45 -0.20 1.62 16 5 N -0.49 -7.17 10.34 -13.51 -0.14 -7.31 16 6 C 0.08 1.02 11.10 -17.96 -0.20 0.82 16 7 C -0.14 -2.20 10.12 -39.51 -0.40 -2.60 16 8 C 0.13 2.40 7.29 -84.70 -0.62 1.78 16 9 N -0.56 -11.58 10.84 -11.49 -0.12 -11.70 16 10 C 0.57 10.81 8.44 -320.02 -2.70 8.11 16 11 N -0.68 -13.25 5.66 -62.96 -0.36 -13.61 16 12 C 0.24 5.66 4.76 -5.19 -0.02 5.63 16 13 C -0.55 -14.48 9.83 -34.44 -0.34 -14.81 16 14 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 16 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 17 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 21 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.78 7.44 -51.93 -0.39 0.39 16 24 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 26 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.41 6.97 7.47 -40.82 -0.31 6.66 16 28 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 29 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 264.68 15.07 3.99 3.99 Total: -1.00 -31.67 264.68 -8.57 -40.24 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.15 Total: 2.52 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -4.50 Total: 3.11 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.24 Total: -65.96 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.67 -8.57 -40.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260266460.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.521 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds