Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38379 * 126.39245 * 2 1 4 4 C 1.38345 * 134.92705 * 359.97208 * 3 2 1 5 5 N 1.31967 * 120.23418 * 180.02562 * 4 3 2 6 6 C 1.32224 * 122.29857 * 359.97438 * 5 4 3 7 7 C 1.36635 * 121.44924 * 0.02574 * 6 5 4 8 8 C 1.39979 * 118.83165 * 359.95613 * 7 6 5 9 9 N 1.35271 * 134.63333 * 180.32280 * 8 7 6 10 10 C 1.31196 * 109.62486 * 180.12407 * 9 8 7 11 11 N 1.37755 * 125.04872 * 179.86469 * 10 9 8 12 12 C 1.46499 * 119.99944 * 359.70335 * 11 10 9 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 H 1.09007 * 109.46793 * 270.00475 * 1 2 3 22 22 H 1.09000 * 109.47000 * 29.99788 * 1 2 3 23 23 H 1.08994 * 109.47443 * 149.99982 * 1 2 3 24 24 H 1.07997 * 119.88163 * 0.03032 * 4 3 2 25 25 H 1.08001 * 119.27717 * 180.02562 * 6 5 4 26 26 H 1.08005 * 120.58694 * 179.97438 * 7 6 5 27 27 H 0.97000 * 119.99636 * 179.69505 * 11 10 9 28 28 H 1.09002 * 109.47391 * 59.99612 * 12 11 10 29 29 H 1.09001 * 109.46813 * 299.99668 * 12 11 10 30 30 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2860 1.1139 0.0000 4 6 2.0772 2.4815 -0.0005 5 7 3.1040 3.3105 -0.0008 6 6 4.3558 2.8847 -0.0002 7 6 4.6553 1.5515 0.0003 8 6 3.6068 0.6241 0.0011 9 7 3.5327 -0.7266 0.0071 10 6 2.2747 -1.0989 0.0019 11 7 1.8362 -2.4048 0.0031 12 6 2.8057 -3.5030 0.0040 13 6 2.0730 -4.8199 0.0058 14 1 0.9932 -4.8370 0.0059 15 6 2.7813 -6.0029 0.0064 16 7 2.1418 -7.1521 0.0075 17 14 4.6490 -5.9732 0.0056 18 1 5.1445 -5.9644 1.4056 19 1 5.1629 -7.1783 -0.6936 20 1 5.1245 -4.7536 -0.6955 21 1 -0.3633 0.0001 1.0278 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8899 -0.5138 24 1 1.0703 2.8721 -0.0005 25 1 5.1592 3.6064 -0.0001 26 1 5.6829 1.2191 0.0003 27 1 0.8854 -2.5971 0.0034 28 1 3.4315 -3.4346 0.8939 29 1 3.4313 -3.4361 -0.8861 30 1 2.6400 -7.9843 0.0083 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260266460.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = 72.125069 kcal Electronic energy + Delta-G solvation = -15394.272405 eV Core-core repulsion = 12803.717390 eV Total energy + Delta-G solvation = -2590.555015 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.20482 -39.60710 -36.94654 -35.31079 -34.59660 -31.86502 -31.10990 -29.29894 -27.91961 -24.67596 -24.01733 -23.23164 -21.46072 -19.67302 -18.60596 -18.31219 -17.20115 -17.14260 -16.72033 -16.18161 -15.55300 -15.08913 -15.03797 -14.75935 -14.52902 -14.43120 -13.56491 -13.53985 -13.03375 -12.95719 -12.73455 -11.92855 -11.68924 -11.47064 -11.12617 -11.08335 -10.78513 -10.51913 -9.30771 -8.70378 -8.41437 -6.49011 -0.01664 0.44753 1.23032 1.34447 1.37871 1.49456 1.91440 2.27802 2.47634 2.94711 3.00088 3.31647 3.63806 3.83793 3.91236 4.04684 4.36595 4.48396 4.60622 4.67802 4.69583 4.89547 5.03144 5.09098 5.22250 5.35091 5.58734 5.73305 5.97738 6.17393 6.51847 6.63752 7.05930 7.10693 7.23304 8.73173 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.040798 B = 0.006250 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.149990 B = 4478.683398 C = 5144.385905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.507 5.507 3 C -0.035 4.035 4 C 0.141 3.859 5 N -0.500 5.500 6 C 0.083 3.917 7 C -0.153 4.153 8 C 0.088 3.912 9 N -0.598 5.598 10 C 0.551 3.449 11 N -0.681 5.681 12 C 0.261 3.739 13 C -0.549 4.549 14 H 0.059 0.941 15 C 0.030 3.970 16 N -0.930 5.930 17 Si 0.936 3.064 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.256 1.256 21 H 0.088 0.912 22 H 0.115 0.885 23 H 0.090 0.910 24 H 0.184 0.816 25 H 0.190 0.810 26 H 0.144 0.856 27 H 0.416 0.584 28 H 0.014 0.986 29 H 0.015 0.985 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 17.759 -0.107 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.206 5.206 3 C -0.145 4.145 4 C -0.025 4.025 5 N -0.211 5.211 6 C -0.068 4.068 7 C -0.176 4.176 8 C -0.039 4.039 9 N -0.331 5.331 10 C 0.194 3.806 11 N -0.321 5.321 12 C 0.137 3.863 13 C -0.587 4.587 14 H 0.077 0.923 15 C -0.170 4.170 16 N -0.569 5.569 17 Si 0.759 3.241 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.180 1.180 21 H 0.107 0.893 22 H 0.134 0.866 23 H 0.109 0.891 24 H 0.201 0.799 25 H 0.207 0.793 26 H 0.162 0.838 27 H 0.254 0.746 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.872 17.816 -0.105 17.838 hybrid contribution -0.221 -1.374 0.022 1.392 sum -1.093 16.442 -0.082 16.478 Atomic orbital electron populations 1.22320 0.73353 1.06334 1.04961 1.45064 1.08175 1.02720 1.64645 1.19975 0.91387 0.91115 1.12047 1.22045 0.99926 0.84099 0.96426 1.67853 1.00003 1.37674 1.15555 1.22479 0.94240 0.93305 0.96768 1.21137 0.98746 0.92444 1.05253 1.19598 0.94070 0.90068 1.00179 1.70631 1.15672 1.11581 1.35240 1.19920 0.85338 0.83166 0.92149 1.43741 1.10337 0.98724 1.79319 1.19047 0.88218 0.82986 0.96005 1.21226 0.94711 0.89702 1.53016 0.92289 1.25528 1.03375 0.94683 0.93450 1.69972 1.38123 0.98308 1.50494 0.85877 0.80012 0.78673 0.79493 1.19044 1.19992 1.17993 0.89311 0.86628 0.89112 0.79891 0.79347 0.83845 0.74601 0.96819 0.96666 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.97 127.77 1.40 2.64 16 2 N -0.51 -14.81 3.23 -541.39 -1.75 -16.56 16 3 C -0.04 -1.06 6.92 38.78 0.27 -0.79 16 4 C 0.14 3.44 11.23 84.70 0.95 4.39 16 5 N -0.50 -12.83 10.34 -196.65 -2.03 -14.87 16 6 C 0.08 2.00 11.10 84.26 0.93 2.94 16 7 C -0.15 -4.45 10.12 22.32 0.23 -4.22 16 8 C 0.09 3.16 7.29 39.68 0.29 3.45 16 9 N -0.60 -25.08 10.84 -190.25 -2.06 -27.14 16 10 C 0.55 20.89 8.44 260.51 2.20 23.09 16 11 N -0.68 -26.90 5.66 -353.10 -2.00 -28.90 16 12 C 0.26 12.40 4.76 85.63 0.41 12.81 16 13 C -0.55 -29.50 9.83 25.60 0.25 -29.25 16 14 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 15 C 0.03 1.68 5.47 84.66 0.46 2.14 16 16 N -0.93 -54.67 13.96 21.45 0.30 -54.37 16 17 Si 0.94 43.15 27.47 68.60 1.88 45.04 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.26 -11.63 6.54 99.48 0.65 -10.98 16 21 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.09 1.49 7.44 -2.39 -0.02 1.48 16 24 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 25 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 27 H 0.42 14.36 7.47 -92.71 -0.69 13.67 16 28 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 29 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 30 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -69.08 264.68 2.15 -66.93 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.42 Total: 12.68 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 7.39 Total: 17.19 kcal Atomic # 7 Polarization: -134.30 SS G_CDS: -7.54 Total: -141.84 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Total: -69.08 2.15 -66.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260266460.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.059 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds