Wall clock time and date at job start Mon Mar 30 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40202 * 120.33643 * 2 1 4 4 N 1.31229 * 120.37924 * 179.76524 * 3 2 1 5 5 C 1.34089 * 120.91765 * 0.50513 * 4 3 2 6 6 N 1.32519 * 131.94440 * 179.77228 * 5 4 3 7 7 C 1.33641 * 109.25710 * 179.97438 * 6 5 4 8 8 C 1.35008 * 108.62295 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.44999 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47001 * 155.21805 * 9 8 7 11 11 N 1.46906 * 109.47160 * 35.21656 * 9 8 7 12 12 C 1.50703 * 109.47108 * 275.21844 * 9 8 7 13 13 H 1.07999 * 120.00087 * 0.02562 * 12 9 8 14 14 C 1.37883 * 119.99647 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00210 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99629 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.47483 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46900 * 120.00870 * 16 14 12 19 19 H 1.48499 * 109.47244 * 240.00282 * 16 14 12 20 20 N 1.36844 * 107.09659 * 359.97438 * 8 7 6 21 21 C 1.35581 * 120.33777 * 180.28375 * 2 1 3 22 22 H 1.09004 * 109.47149 * 269.71568 * 1 2 3 23 23 H 1.09004 * 109.47455 * 29.71666 * 1 2 3 24 24 H 1.08996 * 109.47339 * 149.71755 * 1 2 3 25 25 H 1.07998 * 119.81258 * 0.03242 * 3 2 1 26 26 H 1.07996 * 125.68768 * 179.97438 * 7 6 5 27 27 H 1.00900 * 111.00068 * 173.71382 * 11 9 8 28 28 H 1.00894 * 111.00059 * 297.67511 * 11 9 8 29 29 H 0.96994 * 119.99904 * 179.97438 * 15 14 12 30 30 H 1.08000 * 120.46008 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2151 1.2100 0.0000 4 7 3.5273 1.2110 0.0046 5 6 4.2172 0.0612 -0.0007 6 7 5.5181 -0.1912 -0.0017 7 6 5.7104 -1.5137 -0.0073 8 6 4.5064 -2.1245 -0.0106 9 6 4.2563 -3.6106 -0.0177 10 1 3.2759 -3.8160 0.4119 11 7 5.2907 -4.2850 0.7782 12 6 4.3008 -4.1207 -1.4350 13 1 4.4915 -3.4372 -2.2492 14 6 4.0990 -5.4602 -1.6922 15 7 3.8672 -6.2926 -0.7007 16 14 4.1534 -6.0924 -3.4491 17 1 4.4286 -4.9631 -4.3733 18 1 5.2285 -7.1089 -3.5763 19 1 2.8469 -6.7081 -3.7943 20 7 3.5559 -1.1400 -0.0062 21 6 2.1917 -1.1701 -0.0058 22 1 -0.3634 -0.0051 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3634 -0.8874 -0.5182 25 1 1.6775 2.1467 0.0005 26 1 6.6691 -2.0109 -0.0098 27 1 5.0887 -5.2689 0.8743 28 1 6.2057 -4.1411 0.3783 29 1 3.7249 -7.2348 -0.8817 30 1 1.6648 -2.1129 -0.0100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260431606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:15 Heat of formation + Delta-G solvation = 94.476401 kcal Electronic energy + Delta-G solvation = -15831.598654 eV Core-core repulsion = 13242.012865 eV Total energy + Delta-G solvation = -2589.585789 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.42247 -38.09483 -35.02345 -33.97690 -32.42834 -31.50017 -28.27118 -26.69630 -26.11046 -24.23622 -22.57177 -21.99245 -19.83217 -17.81215 -16.84030 -16.75033 -15.63532 -15.53479 -14.73067 -14.16917 -13.67463 -13.48820 -13.24202 -12.94317 -12.83363 -12.46316 -12.22719 -11.81083 -11.47249 -11.14901 -11.08956 -11.01934 -10.47014 -10.14905 -9.69826 -9.33655 -8.84886 -8.45194 -7.55075 -7.23671 -6.28483 -4.47212 0.95725 1.53205 2.95873 3.10295 3.19803 3.24543 3.42668 4.04497 4.06518 4.18947 4.72897 4.77849 4.92994 4.94538 5.26392 5.52649 5.54586 5.75255 5.94233 5.97709 6.08274 6.19901 6.43020 6.66176 7.04560 7.15539 7.34493 7.56211 7.81220 8.05682 8.42038 8.50419 8.70379 8.90799 9.26255 10.68368 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.008245 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.701386 B = 3395.320915 C = 3850.541872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.196 4.196 3 C 0.156 3.844 4 N -0.436 5.436 5 C 0.339 3.661 6 N -0.472 5.472 7 C 0.030 3.970 8 C 0.020 3.980 9 C 0.281 3.719 10 H 0.043 0.957 11 N -0.844 5.844 12 C -0.549 4.549 13 H 0.057 0.943 14 C 0.070 3.930 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.281 1.281 20 N -0.393 5.393 21 C 0.127 3.873 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.172 0.828 26 H 0.181 0.819 27 H 0.361 0.639 28 H 0.319 0.681 29 H 0.268 0.732 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 7.230 1.152 10.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.202 4.202 3 C -0.033 4.033 4 N -0.147 5.147 5 C -0.008 4.008 6 N -0.195 5.195 7 C -0.120 4.120 8 C -0.094 4.094 9 C 0.170 3.830 10 H 0.061 0.939 11 N -0.375 5.375 12 C -0.589 4.589 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.207 1.207 20 N -0.071 5.071 21 C -0.005 4.005 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.189 0.811 26 H 0.198 0.802 27 H 0.178 0.822 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.717 8.743 1.814 10.603 hybrid contribution -0.929 -2.382 -1.912 3.193 sum -6.646 6.361 -0.098 9.200 Atomic orbital electron populations 1.20520 0.88598 1.03337 1.02617 1.20288 0.98348 0.92552 1.09034 1.23001 0.88486 0.97858 0.93937 1.67738 1.08543 1.23874 1.14530 1.21722 0.89457 0.81012 1.08610 1.70557 1.10082 1.16487 1.22370 1.22158 0.97911 0.87951 1.03947 1.22168 0.86942 0.93097 1.07229 1.17336 0.93237 0.80000 0.92469 0.93886 1.59283 1.04314 1.19953 1.53979 1.21801 1.50636 0.93582 0.92913 0.92424 1.25006 0.93853 0.96636 0.97891 1.69738 1.47896 1.04248 1.31065 0.86389 0.77887 0.78901 0.84035 1.19671 1.20608 1.20737 1.43712 1.06007 1.10654 1.46751 1.22025 0.81812 1.00756 0.95920 0.90980 0.90868 0.91148 0.81054 0.80192 0.82199 0.87178 0.92181 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 10.03 36.00 0.36 -0.45 16 2 C -0.20 -2.62 5.86 -104.84 -0.61 -3.23 16 3 C 0.16 2.18 10.96 -17.07 -0.19 2.00 16 4 N -0.44 -8.23 10.48 -13.70 -0.14 -8.38 16 5 C 0.34 7.34 8.92 -322.53 -2.88 4.46 16 6 N -0.47 -10.78 11.31 -14.45 -0.16 -10.94 16 7 C 0.03 0.66 11.19 -17.91 -0.20 0.46 16 8 C 0.02 0.45 6.02 -81.50 -0.49 -0.04 16 9 C 0.28 6.69 3.12 -70.01 -0.22 6.47 16 10 H 0.04 1.10 8.05 -51.93 -0.42 0.68 16 11 N -0.84 -19.10 9.01 -6.65 -0.06 -19.16 16 12 C -0.55 -14.10 8.69 -34.44 -0.30 -14.39 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 14 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 15 N -0.89 -23.03 11.57 55.43 0.64 -22.39 16 16 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 N -0.39 -8.18 2.95 -60.19 -0.18 -8.35 16 21 C 0.13 2.14 10.60 -16.45 -0.17 1.96 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.50 8.10 -51.93 -0.42 0.07 16 24 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 26 H 0.18 3.50 7.55 -52.49 -0.40 3.11 16 27 H 0.36 8.63 7.15 -39.29 -0.28 8.34 16 28 H 0.32 6.83 8.16 -39.29 -0.32 6.51 16 29 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.17 2.62 7.99 -52.49 -0.42 2.20 16 LS Contribution 264.28 15.07 3.98 3.98 Total: -1.00 -30.06 264.28 -8.80 -38.86 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -3.06 Total: 12.38 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -4.80 Total: -1.09 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: 0.10 Total: -69.22 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.06 -8.80 -38.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.335 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds