Wall clock time and date at job start Mon Mar 30 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40202 * 120.33643 * 2 1 4 4 N 1.31229 * 120.37924 * 179.76524 * 3 2 1 5 5 C 1.34089 * 120.91765 * 0.50513 * 4 3 2 6 6 N 1.32519 * 131.94440 * 179.77228 * 5 4 3 7 7 C 1.33641 * 109.25710 * 179.97438 * 6 5 4 8 8 C 1.35008 * 108.62295 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.44999 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47001 * 155.21805 * 9 8 7 11 11 N 1.46906 * 109.47160 * 35.21656 * 9 8 7 12 12 C 1.50703 * 109.47108 * 275.21844 * 9 8 7 13 13 H 1.07999 * 120.00087 * 0.02562 * 12 9 8 14 14 C 1.37883 * 119.99647 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00210 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99629 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.47483 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46900 * 120.00870 * 16 14 12 19 19 H 1.48499 * 109.47244 * 240.00282 * 16 14 12 20 20 N 1.36844 * 107.09659 * 359.97438 * 8 7 6 21 21 C 1.35581 * 120.33777 * 180.28375 * 2 1 3 22 22 H 1.09004 * 109.47149 * 269.71568 * 1 2 3 23 23 H 1.09004 * 109.47455 * 29.71666 * 1 2 3 24 24 H 1.08996 * 109.47339 * 149.71755 * 1 2 3 25 25 H 1.07998 * 119.81258 * 0.03242 * 3 2 1 26 26 H 1.07996 * 125.68768 * 179.97438 * 7 6 5 27 27 H 1.00900 * 111.00068 * 173.71382 * 11 9 8 28 28 H 1.00894 * 111.00059 * 297.67511 * 11 9 8 29 29 H 0.96994 * 119.99904 * 179.97438 * 15 14 12 30 30 H 1.08000 * 120.46008 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2151 1.2100 0.0000 4 7 3.5273 1.2110 0.0046 5 6 4.2172 0.0612 -0.0007 6 7 5.5181 -0.1912 -0.0017 7 6 5.7104 -1.5137 -0.0073 8 6 4.5064 -2.1245 -0.0106 9 6 4.2563 -3.6106 -0.0177 10 1 3.2759 -3.8160 0.4119 11 7 5.2907 -4.2850 0.7782 12 6 4.3008 -4.1207 -1.4350 13 1 4.4915 -3.4372 -2.2492 14 6 4.0990 -5.4602 -1.6922 15 7 3.8672 -6.2926 -0.7007 16 14 4.1534 -6.0924 -3.4491 17 1 4.4286 -4.9631 -4.3733 18 1 5.2285 -7.1089 -3.5763 19 1 2.8469 -6.7081 -3.7943 20 7 3.5559 -1.1400 -0.0062 21 6 2.1917 -1.1701 -0.0058 22 1 -0.3634 -0.0051 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3634 -0.8874 -0.5182 25 1 1.6775 2.1467 0.0005 26 1 6.6691 -2.0109 -0.0098 27 1 5.0887 -5.2689 0.8743 28 1 6.2057 -4.1411 0.3783 29 1 3.7249 -7.2348 -0.8817 30 1 1.6648 -2.1129 -0.0100 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260431606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:15 Heat of formation + Delta-G solvation = 75.512143 kcal Electronic energy + Delta-G solvation = -15832.421006 eV Core-core repulsion = 13242.012865 eV Total energy + Delta-G solvation = -2590.408141 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.91639 -39.46677 -36.81701 -35.44726 -33.66933 -33.39010 -29.87613 -28.06529 -27.70522 -25.67975 -24.26182 -23.37268 -21.42959 -19.26646 -18.72775 -18.22171 -17.17161 -17.06078 -16.43035 -15.73805 -15.07183 -14.92129 -14.74318 -14.31734 -14.24295 -13.73308 -13.43257 -13.20697 -13.01357 -12.90971 -12.82980 -12.42553 -12.29961 -11.98723 -11.30162 -10.84284 -10.75891 -9.80300 -9.37889 -8.91357 -8.20402 -6.48629 -0.34590 0.16958 1.32390 1.37298 1.46672 1.52586 1.85584 2.32759 2.61025 2.70107 2.96204 3.46896 3.55023 3.86817 3.98133 4.27080 4.42381 4.52834 4.64062 4.65555 4.91867 5.05398 5.16671 5.33278 5.50666 5.54775 5.61925 5.69505 5.90818 6.48806 6.59665 6.78621 6.96660 7.02528 7.28850 8.72649 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.027670 B = 0.008245 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.701386 B = 3395.320915 C = 3850.541872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.164 4.164 3 C 0.180 3.820 4 N -0.470 5.470 5 C 0.331 3.669 6 N -0.510 5.510 7 C 0.022 3.978 8 C -0.011 4.011 9 C 0.294 3.706 10 H 0.019 0.981 11 N -0.837 5.837 12 C -0.562 4.562 13 H 0.038 0.962 14 C 0.034 3.966 15 N -0.907 5.907 16 Si 0.959 3.041 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.275 1.275 20 N -0.399 5.399 21 C 0.086 3.914 22 H 0.093 0.907 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.231 0.769 26 H 0.191 0.809 27 H 0.353 0.647 28 H 0.325 0.675 29 H 0.272 0.728 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.104 8.502 0.714 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.170 4.170 3 C -0.007 4.007 4 N -0.182 5.182 5 C -0.016 4.016 6 N -0.234 5.234 7 C -0.127 4.127 8 C -0.126 4.126 9 C 0.182 3.818 10 H 0.037 0.963 11 N -0.367 5.367 12 C -0.602 4.602 13 H 0.057 0.943 14 C -0.168 4.168 15 N -0.546 5.546 16 Si 0.785 3.215 17 H -0.205 1.205 18 H -0.200 1.200 19 H -0.200 1.200 20 N -0.076 5.076 21 C -0.045 4.045 22 H 0.111 0.889 23 H 0.125 0.875 24 H 0.093 0.907 25 H 0.247 0.753 26 H 0.208 0.792 27 H 0.169 0.831 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.022 10.000 1.384 12.894 hybrid contribution -0.456 -2.607 -1.745 3.170 sum -8.478 7.394 -0.360 11.255 Atomic orbital electron populations 1.20730 0.84483 1.05245 1.04461 1.20950 1.00827 0.90896 1.04318 1.24154 0.87178 1.00338 0.89013 1.67910 1.10624 1.22479 1.17230 1.22094 0.89637 0.82035 1.07869 1.70488 1.11419 1.16704 1.24796 1.22323 0.98332 0.88061 1.04029 1.21864 0.87861 0.92672 1.10170 1.17020 0.92205 0.81222 0.91370 0.96291 1.59246 1.04482 1.19187 1.53810 1.21863 1.51266 0.93731 0.93344 0.94327 1.25618 0.93432 0.96640 1.01120 1.69807 1.47885 1.04523 1.32393 0.85494 0.78139 0.77992 0.79899 1.20501 1.19964 1.19997 1.43754 1.07193 1.09910 1.46753 1.22584 0.80678 1.02768 0.98460 0.88872 0.87539 0.90747 0.75301 0.79249 0.83081 0.86511 0.91819 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.03 71.23 0.71 -0.42 16 2 C -0.16 -3.83 5.86 -20.00 -0.12 -3.95 16 3 C 0.18 4.33 10.96 85.26 0.93 5.26 16 4 N -0.47 -16.97 10.48 -197.25 -2.07 -19.03 16 5 C 0.33 14.45 8.92 261.39 2.33 16.78 16 6 N -0.51 -24.03 11.31 -199.64 -2.26 -26.28 16 7 C 0.02 1.00 11.19 83.67 0.94 1.94 16 8 C -0.01 -0.52 6.02 41.03 0.25 -0.27 16 9 C 0.29 14.49 3.12 43.42 0.14 14.63 16 10 H 0.02 1.02 8.05 -2.39 -0.02 1.00 16 11 N -0.84 -39.09 9.01 -174.94 -1.58 -40.66 16 12 C -0.56 -29.62 8.69 25.60 0.22 -29.40 16 13 H 0.04 2.14 7.74 -2.91 -0.02 2.12 16 14 C 0.03 1.73 5.39 84.66 0.46 2.18 16 15 N -0.91 -47.18 11.57 21.45 0.25 -46.94 16 16 Si 0.96 41.38 29.54 68.60 2.03 43.40 16 17 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 N -0.40 -16.86 2.95 -344.33 -1.01 -17.87 16 21 C 0.09 2.83 10.60 83.36 0.88 3.71 16 22 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.11 0.72 8.10 -2.39 -0.02 0.70 16 24 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 25 H 0.23 2.73 8.06 -2.91 -0.02 2.71 16 26 H 0.19 7.78 7.55 -2.91 -0.02 7.76 16 27 H 0.35 17.32 7.15 -89.69 -0.64 16.68 16 28 H 0.32 14.38 8.16 -89.70 -0.73 13.65 16 29 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.17 5.41 7.99 -2.91 -0.02 5.38 16 Total: -1.00 -67.63 264.28 1.91 -65.72 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.19 Total: 31.20 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.74 Total: 10.47 kcal Atomic # 7 Polarization: -144.12 SS G_CDS: -6.67 Total: -150.79 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -67.63 1.91 -65.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260431606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.228 kcal (2) G-P(sol) polarization free energy of solvation -67.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds