Wall clock time and date at job start Mon Mar 30 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35453 * 125.69435 * 2 1 4 4 N 1.36042 * 107.15935 * 179.84279 * 3 2 1 5 5 C 1.36683 * 133.73473 * 180.10163 * 4 3 2 6 6 C 1.35004 * 119.74176 * 180.34397 * 5 4 3 7 7 N 1.33516 * 121.25468 * 359.97438 * 6 5 4 8 8 C 1.31135 * 121.36807 * 0.04808 * 7 6 5 9 9 C 1.50706 * 120.14485 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47108 * 194.95116 * 9 8 7 11 11 N 1.46894 * 109.47418 * 314.95858 * 9 8 7 12 12 C 1.50699 * 109.46975 * 74.95811 * 9 8 7 13 13 H 1.08007 * 120.00062 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00016 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00060 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99762 * 179.97438 * 14 12 9 17 17 H 1.48491 * 109.47267 * 60.00382 * 16 14 12 18 18 H 1.48503 * 109.46772 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47363 * 299.99681 * 16 14 12 20 20 C 1.37394 * 107.11499 * 0.41494 * 4 3 2 21 21 N 1.32303 * 107.97668 * 359.73948 * 20 4 3 22 22 H 1.09002 * 109.47152 * 269.71610 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.71711 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.71692 * 1 2 3 25 25 H 1.08000 * 126.42245 * 359.96519 * 3 2 1 26 26 H 1.07996 * 120.12296 * 0.36672 * 5 4 3 27 27 H 1.08001 * 119.37062 * 179.97438 * 6 5 4 28 28 H 1.00903 * 110.99860 * 296.04545 * 11 9 8 29 29 H 1.00906 * 111.00450 * 59.99491 * 11 9 8 30 30 H 0.96994 * 119.99795 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.1001 0.0000 4 7 3.5872 0.6676 0.0036 5 6 4.7970 1.3036 0.0070 6 6 5.9353 0.5777 0.0031 7 7 5.9057 -0.7571 -0.0036 8 6 4.7711 -1.4147 -0.0076 9 6 4.7698 -2.9217 -0.0157 10 1 3.7767 -3.2827 -0.2831 11 7 5.7483 -3.4070 -0.9979 12 6 5.1376 -3.4317 1.3539 13 1 5.3513 -2.7343 2.1504 14 6 5.2012 -4.7886 1.5901 15 7 4.9414 -5.6378 0.6201 16 14 5.6578 -5.4207 3.2876 17 1 4.6694 -4.9296 4.2810 18 1 5.6564 -6.9057 3.2796 19 1 7.0112 -4.9295 3.6512 20 6 3.5532 -0.7059 -0.0038 21 7 2.2850 -1.0829 -0.0058 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 -0.8875 -0.5182 24 1 -0.3633 0.8925 -0.5094 25 1 1.9657 2.1279 -0.0005 26 1 4.8421 2.3826 0.0132 27 1 6.8880 1.0864 0.0054 28 1 5.4883 -3.1323 -1.9334 29 1 6.6776 -3.0854 -0.7719 30 1 4.9858 -6.5923 0.7864 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260469287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:19 Heat of formation + Delta-G solvation = 104.631303 kcal Electronic energy + Delta-G solvation = -15836.487214 eV Core-core repulsion = 13247.341775 eV Total energy + Delta-G solvation = -2589.145439 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.66947 -38.22940 -35.19584 -33.17307 -31.70434 -30.93290 -29.00551 -27.67749 -26.01089 -23.77374 -22.89447 -21.01195 -20.12006 -17.97602 -16.85397 -16.26871 -15.71149 -15.19462 -14.71372 -14.39910 -13.83780 -13.75580 -13.27841 -12.96660 -12.60733 -12.43194 -12.07607 -11.92201 -11.18913 -11.06164 -10.73856 -10.63370 -9.94382 -9.78299 -9.33411 -9.14641 -8.40160 -8.34480 -7.71870 -7.11371 -5.82988 -3.96922 1.00130 1.60310 2.78659 3.09395 3.41215 3.44605 3.47616 4.05386 4.43499 4.53515 4.60291 4.66743 4.95989 5.29746 5.34917 5.43736 5.55559 5.75641 5.78817 5.86783 6.05469 6.27124 6.40710 6.72063 6.87767 7.15841 7.42278 7.93230 8.12357 8.15686 8.38511 8.66739 9.06830 9.14022 9.68855 11.21887 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.008530 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.771679 B = 3281.863886 C = 3751.517926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.048 3.952 3 C -0.100 4.100 4 N -0.345 5.345 5 C -0.046 4.046 6 C 0.058 3.942 7 N -0.482 5.482 8 C 0.235 3.765 9 C 0.274 3.726 10 H 0.072 0.928 11 N -0.798 5.798 12 C -0.522 4.522 13 H 0.051 0.949 14 C 0.086 3.914 15 N -0.844 5.844 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.171 3.829 21 N -0.447 5.447 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.178 0.822 26 H 0.160 0.840 27 H 0.169 0.831 28 H 0.296 0.704 29 H 0.330 0.670 30 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.877 14.227 -2.304 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.236 4.236 4 N -0.017 5.017 5 C -0.170 4.170 6 C -0.081 4.081 7 N -0.195 5.195 8 C 0.072 3.928 9 C 0.162 3.838 10 H 0.090 0.910 11 N -0.322 5.322 12 C -0.561 4.561 13 H 0.069 0.931 14 C -0.121 4.121 15 N -0.478 5.478 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.075 4.075 21 N -0.169 5.169 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.196 0.804 26 H 0.177 0.823 27 H 0.186 0.814 28 H 0.106 0.894 29 H 0.143 0.857 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.447 12.257 -2.141 12.912 hybrid contribution 0.023 2.413 0.846 2.557 sum -3.424 14.671 -1.295 15.120 Atomic orbital electron populations 1.20096 0.86945 1.02903 1.02633 1.21084 0.96961 0.88004 1.02794 1.22294 0.81086 1.00844 1.19363 1.42809 1.05936 1.09416 1.43523 1.22276 0.83403 0.99657 1.11684 1.22248 0.97019 0.90604 0.98257 1.68175 1.27973 1.07451 1.15931 1.24204 0.82230 1.01842 0.84521 1.18414 0.95288 0.76251 0.93804 0.91023 1.59267 1.05109 1.65637 1.02234 1.20546 1.50884 0.91556 0.93145 0.93121 1.24869 0.94362 0.96664 0.96189 1.70083 1.45276 1.01731 1.30722 0.86736 0.79011 0.77649 0.84914 1.20414 1.21181 1.20305 1.22259 0.96044 0.80338 1.08833 1.70517 0.98192 1.28778 1.19372 0.90903 0.90544 0.91214 0.80444 0.82258 0.81398 0.89401 0.85724 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.42 36.01 0.38 -0.45 16 2 C 0.05 0.81 7.06 -82.93 -0.59 0.23 16 3 C -0.10 -1.52 11.69 -16.68 -0.20 -1.71 16 4 N -0.34 -6.10 2.95 -62.70 -0.19 -6.28 16 5 C -0.05 -0.68 11.04 -16.54 -0.18 -0.86 16 6 C 0.06 0.93 11.07 -17.97 -0.20 0.73 16 7 N -0.48 -9.94 9.81 -9.36 -0.09 -10.03 16 8 C 0.24 5.39 5.73 -81.87 -0.47 4.92 16 9 C 0.27 7.14 2.95 -70.02 -0.21 6.94 16 10 H 0.07 2.06 7.86 -51.93 -0.41 1.66 16 11 N -0.80 -19.56 8.49 -6.65 -0.06 -19.62 16 12 C -0.52 -14.88 8.71 -34.44 -0.30 -15.18 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.09 2.47 5.39 -17.82 -0.10 2.37 16 15 N -0.84 -24.90 12.77 55.43 0.71 -24.19 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.17 3.71 7.53 -155.97 -1.17 2.53 16 21 N -0.45 -9.68 11.13 -8.95 -0.10 -9.78 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 26 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.30 6.56 9.06 -39.29 -0.36 6.20 16 29 H 0.33 7.91 8.56 -39.29 -0.34 7.57 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 267.73 15.07 4.03 4.03 Total: -1.00 -33.18 267.73 -6.92 -40.11 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -3.18 Total: 9.36 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.03 Total: -0.48 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: 0.27 Total: -69.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.18 -6.92 -40.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.738 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds