Wall clock time and date at job start Mon Mar 30 2020 02:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35453 * 125.69435 * 2 1 4 4 N 1.36042 * 107.15935 * 179.84279 * 3 2 1 5 5 C 1.36683 * 133.73473 * 180.10163 * 4 3 2 6 6 C 1.35004 * 119.74176 * 180.34397 * 5 4 3 7 7 N 1.33516 * 121.25468 * 359.97438 * 6 5 4 8 8 C 1.31135 * 121.36807 * 0.04808 * 7 6 5 9 9 C 1.50706 * 120.14485 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47108 * 194.95116 * 9 8 7 11 11 N 1.46894 * 109.47418 * 314.95858 * 9 8 7 12 12 C 1.50699 * 109.46975 * 74.95811 * 9 8 7 13 13 H 1.08007 * 120.00062 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00016 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00060 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99762 * 179.97438 * 14 12 9 17 17 H 1.48491 * 109.47267 * 60.00382 * 16 14 12 18 18 H 1.48503 * 109.46772 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47363 * 299.99681 * 16 14 12 20 20 C 1.37394 * 107.11499 * 0.41494 * 4 3 2 21 21 N 1.32303 * 107.97668 * 359.73948 * 20 4 3 22 22 H 1.09002 * 109.47152 * 269.71610 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.71711 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.71692 * 1 2 3 25 25 H 1.08000 * 126.42245 * 359.96519 * 3 2 1 26 26 H 1.07996 * 120.12296 * 0.36672 * 5 4 3 27 27 H 1.08001 * 119.37062 * 179.97438 * 6 5 4 28 28 H 1.00903 * 110.99860 * 296.04545 * 11 9 8 29 29 H 1.00906 * 111.00450 * 59.99491 * 11 9 8 30 30 H 0.96994 * 119.99795 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2973 1.1001 0.0000 4 7 3.5872 0.6676 0.0036 5 6 4.7970 1.3036 0.0070 6 6 5.9353 0.5777 0.0031 7 7 5.9057 -0.7571 -0.0036 8 6 4.7711 -1.4147 -0.0076 9 6 4.7698 -2.9217 -0.0157 10 1 3.7767 -3.2827 -0.2831 11 7 5.7483 -3.4070 -0.9979 12 6 5.1376 -3.4317 1.3539 13 1 5.3513 -2.7343 2.1504 14 6 5.2012 -4.7886 1.5901 15 7 4.9414 -5.6378 0.6201 16 14 5.6578 -5.4207 3.2876 17 1 4.6694 -4.9296 4.2810 18 1 5.6564 -6.9057 3.2796 19 1 7.0112 -4.9295 3.6512 20 6 3.5532 -0.7059 -0.0038 21 7 2.2850 -1.0829 -0.0058 22 1 -0.3633 -0.0051 1.0277 23 1 -0.3633 -0.8875 -0.5182 24 1 -0.3633 0.8925 -0.5094 25 1 1.9657 2.1279 -0.0005 26 1 4.8421 2.3826 0.0132 27 1 6.8880 1.0864 0.0054 28 1 5.4883 -3.1323 -1.9334 29 1 6.6776 -3.0854 -0.7719 30 1 4.9858 -6.5923 0.7864 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260469287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:18 Heat of formation + Delta-G solvation = 79.501337 kcal Electronic energy + Delta-G solvation = -15837.576931 eV Core-core repulsion = 13247.341775 eV Total energy + Delta-G solvation = -2590.235156 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.00781 -39.63707 -36.89809 -34.82955 -33.43070 -32.47850 -30.39742 -28.99275 -27.95327 -25.39459 -24.26433 -22.66192 -21.47977 -19.33948 -18.63930 -17.97970 -17.14335 -16.68042 -16.29657 -16.19883 -15.47683 -15.10570 -14.58400 -14.28156 -14.22330 -13.89135 -13.36262 -13.24719 -13.04631 -12.71812 -12.69905 -12.33332 -11.95097 -11.30862 -11.12802 -10.75633 -10.54515 -9.70936 -9.14630 -8.90611 -7.99419 -6.20874 -0.37717 0.25028 1.41886 1.44511 1.51433 1.54048 1.84916 2.43406 2.64802 3.10852 3.22606 3.33276 3.45412 3.80541 4.21390 4.26961 4.32369 4.42020 4.54053 4.85453 4.86594 4.90423 5.10170 5.26877 5.40372 5.64183 5.69614 5.94054 6.08839 6.55973 6.80271 6.96538 7.05813 7.19168 7.48546 9.04986 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.026365 B = 0.008530 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.771679 B = 3281.863886 C = 3751.517926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.028 3.972 3 C -0.078 4.078 4 N -0.348 5.348 5 C -0.016 4.016 6 C 0.031 3.969 7 N -0.493 5.493 8 C 0.195 3.805 9 C 0.283 3.717 10 H 0.027 0.973 11 N -0.804 5.804 12 C -0.537 4.537 13 H 0.036 0.964 14 C 0.037 3.963 15 N -0.876 5.876 16 Si 0.954 3.046 17 H -0.277 1.277 18 H -0.277 1.277 19 H -0.271 1.271 20 C 0.133 3.867 21 N -0.503 5.503 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.109 0.891 25 H 0.235 0.765 26 H 0.222 0.778 27 H 0.213 0.787 28 H 0.306 0.694 29 H 0.331 0.669 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 17.687 -1.737 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.107 4.107 3 C -0.213 4.213 4 N -0.020 5.020 5 C -0.139 4.139 6 C -0.108 4.108 7 N -0.207 5.207 8 C 0.032 3.968 9 C 0.171 3.829 10 H 0.045 0.955 11 N -0.330 5.330 12 C -0.576 4.576 13 H 0.055 0.945 14 C -0.167 4.167 15 N -0.511 5.511 16 Si 0.778 3.222 17 H -0.202 1.202 18 H -0.202 1.202 19 H -0.197 1.197 20 C -0.111 4.111 21 N -0.226 5.226 22 H 0.101 0.899 23 H 0.082 0.918 24 H 0.128 0.872 25 H 0.252 0.748 26 H 0.238 0.762 27 H 0.229 0.771 28 H 0.117 0.883 29 H 0.144 0.856 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.594 15.723 -1.574 16.205 hybrid contribution -0.003 1.568 0.627 1.689 sum -3.597 17.291 -0.947 17.687 Atomic orbital electron populations 1.20259 0.84006 1.04306 1.03685 1.21994 0.99013 0.87589 1.02139 1.23194 0.79509 1.02615 1.16029 1.43137 1.07780 1.08162 1.42935 1.23228 0.81744 1.02150 1.06808 1.22977 0.99727 0.88887 0.99161 1.67981 1.27495 1.10331 1.14868 1.23201 0.83951 1.00328 0.89358 1.17761 0.92966 0.79375 0.92756 0.95539 1.59089 1.04926 1.66308 1.02671 1.20778 1.50848 0.91792 0.94208 0.94547 1.25649 0.94291 0.96838 0.99934 1.70211 1.46339 1.01849 1.32716 0.85727 0.78748 0.77366 0.80310 1.20209 1.20200 1.19666 1.21956 0.95583 0.82469 1.11134 1.70461 0.99232 1.31668 1.21256 0.89871 0.91767 0.87218 0.74839 0.76189 0.77092 0.88304 0.85581 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 10.42 71.24 0.74 -0.69 16 2 C 0.03 0.91 7.06 41.69 0.29 1.21 16 3 C -0.08 -2.07 11.69 83.40 0.98 -1.09 16 4 N -0.35 -11.34 2.95 -352.28 -1.04 -12.38 16 5 C -0.02 -0.40 11.04 83.19 0.92 0.52 16 6 C 0.03 0.91 11.07 83.69 0.93 1.84 16 7 N -0.49 -20.38 9.81 -183.53 -1.80 -22.18 16 8 C 0.19 9.26 5.73 43.32 0.25 9.51 16 9 C 0.28 15.69 2.95 43.43 0.13 15.82 16 10 H 0.03 1.68 7.86 -2.39 -0.02 1.66 16 11 N -0.80 -41.62 8.49 -174.96 -1.49 -43.10 16 12 C -0.54 -32.10 8.71 25.60 0.22 -31.88 16 13 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 14 C 0.04 2.19 5.39 84.66 0.46 2.64 16 15 N -0.88 -53.73 12.77 21.45 0.27 -53.46 16 16 Si 0.95 46.15 29.54 68.60 2.03 48.18 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 20 C 0.13 5.85 7.53 134.07 1.01 6.85 16 21 N -0.50 -22.44 11.13 -182.21 -2.03 -24.47 16 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 25 H 0.24 3.29 8.06 -2.91 -0.02 3.26 16 26 H 0.22 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.31 14.41 9.06 -89.69 -0.81 13.60 16 29 H 0.33 16.62 8.56 -89.69 -0.77 15.86 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -78.67 267.73 1.47 -77.20 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.40 Total: 25.50 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.92 Total: 4.73 kcal Atomic # 7 Polarization: -149.52 SS G_CDS: -6.08 Total: -155.60 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -78.67 1.47 -77.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.700 kcal (2) G-P(sol) polarization free energy of solvation -78.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds