Wall clock time and date at job start Mon Mar 30 2020 03:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48500 * 109.47035 * 269.99761 * 3 2 1 5 5 H 1.48499 * 109.47454 * 29.99795 * 3 2 1 6 6 H 1.48501 * 109.47261 * 149.99732 * 3 2 1 7 7 C 1.37877 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00378 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99895 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27164 * 57.90337 * 9 7 2 11 11 C 1.54597 * 110.38894 * 295.76138 * 9 7 2 12 12 C 1.54937 * 102.92202 * 262.99868 * 11 9 7 13 13 N 1.48815 * 103.34628 * 322.69349 * 12 11 9 14 14 C 1.47902 * 105.67906 * 38.97352 * 13 12 11 15 15 H 1.09008 * 109.91251 * 94.35864 * 14 13 12 16 16 C 1.53000 * 109.91818 * 215.45243 * 14 13 12 17 17 C 1.50706 * 109.47116 * 293.19581 * 16 14 13 18 18 C 1.38640 * 120.79101 * 269.72177 * 17 16 14 19 19 C 1.38211 * 119.16250 * 179.75919 * 18 17 16 20 20 N 1.31874 * 120.76138 * 0.52692 * 19 18 17 21 21 C 1.31867 * 121.72181 * 359.74240 * 20 19 18 22 22 C 1.38204 * 120.76954 * 359.97438 * 21 20 19 23 23 H 0.97004 * 119.99773 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.72704 * 21.35572 * 11 9 7 25 25 H 1.09001 * 110.71960 * 144.64080 * 11 9 7 26 26 H 1.08999 * 110.66623 * 81.01919 * 12 11 9 27 27 H 1.08996 * 110.67179 * 204.15847 * 12 11 9 28 28 H 1.00901 * 110.96341 * 278.57156 * 13 12 11 29 29 H 1.09000 * 109.46884 * 173.20314 * 16 14 13 30 30 H 1.09000 * 109.46955 * 53.19629 * 16 14 13 31 31 H 1.08003 * 120.42416 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.62204 * 180.25149 * 19 18 17 33 33 H 1.08011 * 119.61124 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.41928 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5920 -2.5548 -0.8659 11 6 0.4357 -2.6504 1.3053 12 6 1.3597 -3.5225 2.1921 13 7 1.9679 -4.4739 1.2228 14 6 2.2344 -3.6841 0.0011 15 1 3.2602 -3.3154 0.0137 16 6 2.0074 -4.5504 -1.2395 17 6 3.0467 -5.6407 -1.2878 18 6 4.2518 -5.4438 -1.9443 19 6 5.1830 -6.4650 -1.9635 20 7 4.9313 -7.6184 -1.3759 21 6 3.7941 -7.8427 -0.7472 22 6 2.8180 -6.8665 -0.6816 23 1 -0.4850 0.8401 -0.0004 24 1 0.2632 -1.6783 1.7673 25 1 -0.5082 -3.1604 1.1133 26 1 2.1302 -2.9115 2.6624 27 1 0.7790 -4.0571 2.9438 28 1 1.3416 -5.2407 1.0282 29 1 2.0874 -3.9324 -2.1337 30 1 1.0141 -4.9970 -1.1939 31 1 4.4618 -4.5032 -2.4317 32 1 6.1259 -6.3182 -2.4693 33 1 3.6235 -8.8005 -0.2779 34 1 1.8885 -7.0564 -0.1655 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260565930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:17 Heat of formation + Delta-G solvation = 23.254215 kcal Electronic energy + Delta-G solvation = -15986.486198 eV Core-core repulsion = 13497.352327 eV Total energy + Delta-G solvation = -2489.133871 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97008 -37.94323 -33.71910 -32.62686 -30.97056 -29.45527 -28.80364 -25.82617 -23.88862 -23.23320 -21.61856 -20.54172 -19.06630 -16.70008 -16.05922 -15.99638 -15.48710 -15.01967 -14.72919 -13.69077 -13.66156 -13.48006 -13.19719 -12.58385 -12.37205 -12.04164 -11.63340 -11.40435 -11.06115 -10.90066 -10.63171 -10.47875 -10.06478 -9.93569 -9.73486 -9.27037 -8.98529 -8.92222 -8.84809 -8.42724 -7.78189 -6.07869 -4.12026 1.37200 1.54096 3.26095 3.33518 3.36970 4.05489 4.38547 4.63997 4.90159 4.98182 5.13199 5.24387 5.38316 5.40297 5.65474 5.71654 5.83303 5.98399 6.02059 6.18738 6.25410 6.33867 6.41228 6.58752 6.63083 6.80166 6.94389 7.00099 7.13683 7.54165 7.56782 7.75254 7.87045 8.11632 8.16908 8.38370 8.90842 9.52688 11.00680 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.034382 B = 0.006650 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.195916 B = 4209.389457 C = 4696.720931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.030 3.970 10 H 0.031 0.969 11 C -0.132 4.132 12 C 0.042 3.958 13 N -0.674 5.674 14 C 0.083 3.917 15 H 0.078 0.922 16 C -0.088 4.088 17 C -0.015 4.015 18 C -0.172 4.172 19 C 0.093 3.907 20 N -0.499 5.499 21 C 0.093 3.907 22 C -0.161 4.161 23 H 0.260 0.740 24 H 0.080 0.920 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.318 0.682 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -10.337 -1.586 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.010 3.990 10 H 0.050 0.950 11 C -0.172 4.172 12 C -0.087 4.087 13 N -0.301 5.301 14 C -0.027 4.027 15 H 0.096 0.904 16 C -0.126 4.126 17 C -0.023 4.023 18 C -0.191 4.191 19 C -0.064 4.064 20 N -0.209 5.209 21 C -0.064 4.064 22 C -0.181 4.181 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.559 -10.881 -1.337 11.873 hybrid contribution -1.204 1.902 -0.304 2.272 sum 3.355 -8.979 -1.641 9.724 Atomic orbital electron populations 1.69977 1.05901 1.26546 1.50335 1.24978 0.94830 0.99084 0.95140 0.86638 0.79966 0.83574 0.78130 1.20687 1.21263 1.19865 1.21169 0.92683 0.90174 1.50672 0.92577 1.19863 0.92714 0.92328 0.94063 0.95043 1.22965 0.95833 0.99896 0.98499 1.23118 0.96800 0.93942 0.94817 1.63201 1.46328 1.09995 1.10590 1.22599 1.01481 0.92509 0.86118 0.90353 1.21081 0.95873 0.94756 1.00863 1.20434 0.95109 0.94516 0.92230 1.22079 0.94697 1.00785 1.01589 1.22638 0.98773 0.88797 0.96152 1.67610 1.21177 1.22893 1.09223 1.22627 0.89135 0.98935 0.95684 1.21959 1.01134 0.94095 1.00887 0.93031 0.90133 0.95203 0.90930 0.93059 0.86743 0.89835 0.91227 0.84927 0.83298 0.83359 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 12.15 55.43 0.67 -24.21 16 2 C 0.06 1.65 5.10 -17.82 -0.09 1.56 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.42 8.49 -34.44 -0.29 -13.71 16 8 H 0.06 1.48 7.34 -52.49 -0.39 1.10 16 9 C 0.03 0.71 2.51 -90.42 -0.23 0.48 16 10 H 0.03 0.80 7.69 -51.93 -0.40 0.40 16 11 C -0.13 -2.97 6.17 -24.87 -0.15 -3.12 16 12 C 0.04 0.82 7.55 -1.74 -0.01 0.80 16 13 N -0.67 -12.22 7.03 -102.92 -0.72 -12.95 16 14 C 0.08 1.62 3.02 -66.65 -0.20 1.42 16 15 H 0.08 1.70 7.39 -51.92 -0.38 1.31 16 16 C -0.09 -1.44 4.53 -27.88 -0.13 -1.56 16 17 C -0.01 -0.22 5.01 -104.32 -0.52 -0.75 16 18 C -0.17 -2.45 9.82 -39.44 -0.39 -2.84 16 19 C 0.09 1.27 11.18 -17.54 -0.20 1.08 16 20 N -0.50 -7.37 10.36 -13.25 -0.14 -7.51 16 21 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 22 C -0.16 -2.19 9.26 -39.44 -0.37 -2.56 16 23 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 24 H 0.08 2.05 6.77 -51.93 -0.35 1.70 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.32 5.13 7.44 -39.29 -0.29 4.84 16 29 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 30 H 0.07 1.07 7.98 -51.93 -0.41 0.66 16 31 H 0.13 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.13 1.53 7.55 -52.49 -0.40 1.13 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -28.63 281.38 -8.45 -37.08 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.71 Total: 5.65 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.77 Total: -18.16 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: -0.19 Total: -44.67 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.63 -8.45 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260565930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.335 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds