Wall clock time and date at job start Mon Mar 30 2020 03:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48500 * 109.47035 * 269.99761 * 3 2 1 5 5 H 1.48499 * 109.47454 * 29.99795 * 3 2 1 6 6 H 1.48501 * 109.47261 * 149.99732 * 3 2 1 7 7 C 1.37877 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00378 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99895 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.27164 * 57.90337 * 9 7 2 11 11 C 1.54597 * 110.38894 * 295.76138 * 9 7 2 12 12 C 1.54937 * 102.92202 * 262.99868 * 11 9 7 13 13 N 1.48815 * 103.34628 * 322.69349 * 12 11 9 14 14 C 1.47902 * 105.67906 * 38.97352 * 13 12 11 15 15 H 1.09008 * 109.91251 * 94.35864 * 14 13 12 16 16 C 1.53000 * 109.91818 * 215.45243 * 14 13 12 17 17 C 1.50706 * 109.47116 * 293.19581 * 16 14 13 18 18 C 1.38640 * 120.79101 * 269.72177 * 17 16 14 19 19 C 1.38211 * 119.16250 * 179.75919 * 18 17 16 20 20 N 1.31874 * 120.76138 * 0.52692 * 19 18 17 21 21 C 1.31867 * 121.72181 * 359.74240 * 20 19 18 22 22 C 1.38204 * 120.76954 * 359.97438 * 21 20 19 23 23 H 0.97004 * 119.99773 * 0.02562 * 1 2 3 24 24 H 1.08999 * 110.72704 * 21.35572 * 11 9 7 25 25 H 1.09001 * 110.71960 * 144.64080 * 11 9 7 26 26 H 1.08999 * 110.66623 * 81.01919 * 12 11 9 27 27 H 1.08996 * 110.67179 * 204.15847 * 12 11 9 28 28 H 1.00901 * 110.96341 * 278.57156 * 13 12 11 29 29 H 1.09000 * 109.46884 * 173.20314 * 16 14 13 30 30 H 1.09000 * 109.46955 * 53.19629 * 16 14 13 31 31 H 1.08003 * 120.42416 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.62204 * 180.25149 * 19 18 17 33 33 H 1.08011 * 119.61124 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.41928 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5920 -2.5548 -0.8659 11 6 0.4357 -2.6504 1.3053 12 6 1.3597 -3.5225 2.1921 13 7 1.9679 -4.4739 1.2228 14 6 2.2344 -3.6841 0.0011 15 1 3.2602 -3.3154 0.0137 16 6 2.0074 -4.5504 -1.2395 17 6 3.0467 -5.6407 -1.2878 18 6 4.2518 -5.4438 -1.9443 19 6 5.1830 -6.4650 -1.9635 20 7 4.9313 -7.6184 -1.3759 21 6 3.7941 -7.8427 -0.7472 22 6 2.8180 -6.8665 -0.6816 23 1 -0.4850 0.8401 -0.0004 24 1 0.2632 -1.6783 1.7673 25 1 -0.5082 -3.1604 1.1133 26 1 2.1302 -2.9115 2.6624 27 1 0.7790 -4.0571 2.9438 28 1 1.3416 -5.2407 1.0282 29 1 2.0874 -3.9324 -2.1337 30 1 1.0141 -4.9970 -1.1939 31 1 4.4618 -4.5032 -2.4317 32 1 6.1259 -6.3182 -2.4693 33 1 3.6235 -8.8005 -0.2779 34 1 1.8885 -7.0564 -0.1655 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260565930.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:17 Heat of formation + Delta-G solvation = 5.308233 kcal Electronic energy + Delta-G solvation = -15987.264394 eV Core-core repulsion = 13497.352327 eV Total energy + Delta-G solvation = -2489.912067 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.08953 -39.52558 -35.14506 -34.44912 -32.01030 -30.96336 -30.51890 -27.47512 -25.62451 -24.28999 -22.89059 -22.11948 -20.81602 -18.43901 -17.43429 -17.16539 -16.71349 -16.68997 -16.25353 -15.35786 -15.02672 -14.68328 -14.38479 -14.33830 -13.86818 -13.61134 -13.20803 -12.95941 -12.67919 -12.44541 -12.37811 -12.15915 -11.87044 -11.65535 -11.37481 -10.87131 -10.47381 -10.35622 -10.21353 -9.95386 -9.36239 -8.14893 -6.24532 0.33612 0.42806 1.38230 1.40315 1.49457 2.41013 2.98843 3.16266 3.46726 3.69357 3.83147 3.94758 4.19693 4.29859 4.35732 4.37270 4.51568 4.60606 4.66001 4.76667 4.89854 4.96566 5.03466 5.09109 5.17045 5.28540 5.38456 5.55596 5.62191 5.79340 5.82774 5.91176 5.99038 6.39062 6.69201 6.85934 7.12678 7.43138 8.93020 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.034382 B = 0.006650 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.195916 B = 4209.389457 C = 4696.720931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.049 0.951 9 C 0.023 3.977 10 H 0.005 0.995 11 C -0.129 4.129 12 C 0.053 3.947 13 N -0.663 5.663 14 C 0.096 3.904 15 H 0.056 0.944 16 C -0.077 4.077 17 C -0.031 4.031 18 C -0.183 4.183 19 C 0.089 3.911 20 N -0.517 5.517 21 C 0.089 3.911 22 C -0.161 4.161 23 H 0.260 0.740 24 H 0.045 0.955 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.335 0.665 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 -11.693 -1.258 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.561 4.561 8 H 0.067 0.933 9 C 0.004 3.996 10 H 0.023 0.977 11 C -0.168 4.168 12 C -0.077 4.077 13 N -0.291 5.291 14 C -0.014 4.014 15 H 0.074 0.926 16 C -0.115 4.115 17 C -0.039 4.039 18 C -0.202 4.202 19 C -0.067 4.067 20 N -0.227 5.227 21 C -0.067 4.067 22 C -0.180 4.180 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.151 0.849 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.155 0.845 32 H 0.190 0.810 33 H 0.195 0.805 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.178 -12.252 -1.012 13.340 hybrid contribution -1.394 2.290 -0.417 2.713 sum 3.784 -9.963 -1.429 10.752 Atomic orbital electron populations 1.70084 1.07105 1.27145 1.51324 1.25676 0.95576 1.02157 0.95012 0.85713 0.78798 0.79890 0.78241 1.20116 1.21030 1.19517 1.21493 0.92589 0.91785 1.50210 0.93301 1.19858 0.93150 0.93063 0.93568 0.97668 1.22825 0.96692 0.98885 0.98419 1.23010 0.95905 0.93716 0.95045 1.63096 1.46656 1.09778 1.09595 1.22251 0.98889 0.91964 0.88337 0.92623 1.20877 0.97162 0.94735 0.98745 1.20372 0.95028 0.94794 0.93669 1.22240 0.94816 1.01365 1.01809 1.23020 0.99531 0.88299 0.95892 1.67677 1.21975 1.23296 1.09744 1.23127 0.88493 1.00003 0.95051 1.22175 1.02019 0.93416 1.00432 0.93127 0.93602 0.94642 0.92390 0.89771 0.84876 0.90732 0.90089 0.84494 0.80951 0.80478 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.37 12.15 21.45 0.26 -52.11 16 2 C 0.01 0.80 5.10 84.65 0.43 1.23 16 3 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.52 -28.12 8.49 25.60 0.22 -27.90 16 8 H 0.05 2.64 7.34 -2.91 -0.02 2.61 16 9 C 0.02 1.12 2.51 -10.66 -0.03 1.09 16 10 H 0.01 0.27 7.69 -2.38 -0.02 0.25 16 11 C -0.13 -5.78 6.17 31.80 0.20 -5.59 16 12 C 0.05 1.95 7.55 86.59 0.65 2.61 16 13 N -0.66 -22.79 7.03 -479.53 -3.37 -26.16 16 14 C 0.10 3.71 3.02 45.06 0.14 3.85 16 15 H 0.06 2.42 7.39 -2.38 -0.02 2.40 16 16 C -0.08 -2.47 4.53 29.85 0.14 -2.33 16 17 C -0.03 -0.87 5.01 -19.67 -0.10 -0.97 16 18 C -0.18 -5.00 9.82 22.36 0.22 -4.78 16 19 C 0.09 2.27 11.18 84.68 0.95 3.21 16 20 N -0.52 -14.09 10.36 -195.83 -2.03 -16.12 16 21 C 0.09 2.14 11.18 84.68 0.95 3.09 16 22 C -0.16 -3.95 9.26 22.36 0.21 -3.75 16 23 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 24 H 0.05 2.37 6.77 -2.39 -0.02 2.35 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.33 9.81 7.44 -89.69 -0.67 9.14 16 29 H 0.07 2.49 8.10 -2.39 -0.02 2.47 16 30 H 0.08 2.38 7.98 -2.39 -0.02 2.36 16 31 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.18 3.06 8.06 -2.90 -0.02 3.04 16 34 H 0.15 2.99 7.55 -2.91 -0.02 2.97 16 Total: -1.00 -61.42 281.38 1.27 -60.15 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.42 Total: 19.18 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 3.97 Total: -30.24 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -5.14 Total: -94.39 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -61.42 1.27 -60.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260565930.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.458 kcal (2) G-P(sol) polarization free energy of solvation -61.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds