Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36958 * 120.00177 * 2 1 4 4 H 1.08000 * 119.99666 * 204.31717 * 3 2 1 5 5 C 1.38835 * 119.99991 * 24.31181 * 3 2 1 6 6 N 1.31531 * 119.99909 * 12.61019 * 5 3 2 7 7 Si 1.86797 * 119.99983 * 192.60943 * 5 3 2 8 8 H 1.48497 * 109.47007 * 90.00226 * 7 5 3 9 9 H 1.48505 * 109.47160 * 210.00107 * 7 5 3 10 10 H 1.48506 * 109.46992 * 329.99873 * 7 5 3 11 11 C 1.37739 * 119.99681 * 179.97438 * 2 1 3 12 12 N 1.31260 * 125.06841 * 174.01248 * 11 2 1 13 13 C 1.35122 * 109.63621 * 179.97438 * 12 11 2 14 14 C 1.40055 * 134.62566 * 180.02562 * 13 12 11 15 15 C 1.36616 * 118.82476 * 179.97438 * 14 13 12 16 16 N 1.32234 * 121.47015 * 0.02562 * 15 14 13 17 17 C 1.31951 * 122.31894 * 359.97438 * 16 15 14 18 18 C 1.38400 * 120.22925 * 359.97438 * 17 16 15 19 19 N 1.36615 * 125.07327 * 353.98312 * 11 2 1 20 20 C 1.46502 * 126.39050 * 359.76734 * 19 11 2 21 21 H 1.09001 * 109.47707 * 264.52944 * 1 2 3 22 22 H 1.08999 * 109.46871 * 24.53141 * 1 2 3 23 23 H 1.09000 * 109.47187 * 144.52750 * 1 2 3 24 24 H 0.97000 * 119.99808 * 179.97438 * 6 5 3 25 25 H 1.07998 * 120.58811 * 359.95002 * 14 13 12 26 26 H 1.08000 * 119.26113 * 180.02562 * 15 14 13 27 27 H 1.07994 * 119.88213 * 180.02562 * 17 16 15 28 28 H 1.08998 * 109.46829 * 83.78781 * 20 19 11 29 29 H 1.09000 * 109.46805 * 203.78576 * 20 19 11 30 30 H 1.09000 * 109.47266 * 323.77977 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.1579 1.2275 -0.3852 5 6 1.5480 2.3351 0.4950 6 7 0.4316 2.2478 1.1849 7 14 2.3238 4.0051 0.1812 8 1 1.7893 4.5693 -1.0841 9 1 2.0019 4.9198 1.3060 10 1 3.7972 3.8539 0.0724 11 6 2.1536 -1.1929 0.0005 12 7 3.4560 -1.3119 -0.1115 13 6 3.7975 -2.6187 -0.0728 14 6 5.0065 -3.3221 -0.1447 15 6 4.9804 -4.6860 -0.0692 16 7 3.8442 -5.3482 0.0688 17 6 2.6765 -4.7380 0.1419 18 6 2.6063 -3.3574 0.0753 19 7 1.5831 -2.4286 0.1183 20 6 0.1544 -2.7156 0.2688 21 1 -0.3634 -0.0980 1.0229 22 1 -0.3633 0.9349 -0.4267 23 1 -0.3633 -0.8369 -0.5964 24 1 0.0113 3.0506 1.5311 25 1 5.9427 -2.7958 -0.2582 26 1 5.9086 -5.2355 -0.1235 27 1 1.7725 -5.3180 0.2550 28 1 -0.3187 -2.7301 -0.7131 29 1 0.0273 -3.6864 0.7477 30 1 -0.3085 -1.9438 0.8838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260604987.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = 114.847908 kcal Electronic energy + Delta-G solvation = -15965.761242 eV Core-core repulsion = 13377.058828 eV Total energy + Delta-G solvation = -2588.702414 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.36583 -38.06276 -35.92324 -33.70793 -31.94150 -30.36880 -28.86357 -27.09049 -26.21119 -24.49124 -22.00238 -21.65488 -19.90230 -17.66887 -16.69141 -16.41317 -15.73284 -15.48677 -14.83107 -14.26422 -13.91043 -13.56781 -13.33606 -13.10898 -12.88494 -12.65338 -11.95786 -11.56222 -11.39348 -11.27484 -10.78711 -10.57780 -10.44333 -9.79312 -9.51025 -9.21112 -8.74115 -8.66696 -7.67834 -6.99443 -6.53192 -3.99535 1.65452 2.13510 3.03581 3.09607 3.16506 3.26221 3.78982 3.97209 4.41273 4.65170 4.89807 5.01086 5.11552 5.17095 5.48963 5.61159 5.68178 5.72943 5.92250 6.04239 6.18423 6.46056 6.54083 6.79478 6.91381 7.09221 7.20835 7.36875 7.48589 8.04794 8.33090 8.67570 8.83826 9.09452 9.44409 10.49198 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.040227 B = 0.007620 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.883153 B = 3673.724452 C = 4296.734755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.413 5.413 3 C -0.287 4.287 4 H 0.109 0.891 5 C 0.026 3.974 6 N -0.882 5.882 7 Si 0.937 3.063 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.266 1.266 11 C 0.530 3.470 12 N -0.569 5.569 13 C 0.146 3.854 14 C -0.168 4.168 15 C 0.076 3.924 16 N -0.512 5.512 17 C 0.119 3.881 18 C -0.034 4.034 19 N -0.528 5.528 20 C 0.081 3.919 21 H 0.054 0.946 22 H 0.087 0.913 23 H 0.033 0.967 24 H 0.271 0.729 25 H 0.126 0.874 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -6.207 -1.682 6.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.114 5.114 3 C -0.416 4.416 4 H 0.126 0.874 5 C -0.178 4.178 6 N -0.520 5.520 7 Si 0.763 3.237 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.190 1.190 11 C 0.179 3.821 12 N -0.303 5.303 13 C 0.014 3.986 14 C -0.193 4.193 15 C -0.077 4.077 16 N -0.225 5.225 17 C -0.045 4.045 18 C -0.144 4.144 19 N -0.230 5.230 20 C -0.061 4.061 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.144 0.856 26 H 0.163 0.837 27 H 0.156 0.844 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.414 -6.073 -1.609 6.439 hybrid contribution -0.556 1.190 0.060 1.315 sum -1.970 -4.882 -1.548 5.488 Atomic orbital electron populations 1.21910 0.79217 1.01315 1.00467 1.41677 1.04235 0.99731 1.65789 1.19796 1.01079 0.82178 1.38553 0.87369 1.25440 0.96900 1.00495 0.94947 1.70031 1.18977 1.30144 1.32861 0.85732 0.79776 0.80254 0.77919 1.20182 1.20793 1.19005 1.20270 0.86596 0.80442 0.94753 1.70714 1.07542 1.15260 1.36803 1.19212 0.92643 0.90044 0.96721 1.20668 0.96167 0.94171 1.08246 1.21757 0.95805 0.90988 0.99133 1.67634 0.97729 1.39375 1.17728 1.21272 0.96054 0.87357 0.99782 1.19652 0.89659 0.93014 1.12084 1.44737 1.06049 1.04712 1.67539 1.22125 0.79090 1.02908 1.02014 0.92753 0.89474 0.94911 0.91874 0.85595 0.83696 0.84442 0.92041 0.90718 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.36 7.23 59.85 0.43 2.80 16 2 N -0.41 -10.09 3.09 -123.86 -0.38 -10.47 16 3 C -0.29 -7.50 9.40 -15.04 -0.14 -7.64 16 4 H 0.11 2.93 7.57 -52.49 -0.40 2.54 16 5 C 0.03 0.66 5.04 -17.46 -0.09 0.57 16 6 N -0.88 -22.15 10.83 55.49 0.60 -21.55 16 7 Si 0.94 19.70 29.57 -169.99 -5.03 14.68 16 8 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 9 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 11 C 0.53 12.72 8.15 -319.81 -2.61 10.11 16 12 N -0.57 -14.32 10.62 -11.44 -0.12 -14.44 16 13 C 0.15 3.27 7.29 -84.71 -0.62 2.65 16 14 C -0.17 -3.18 10.13 -39.49 -0.40 -3.58 16 15 C 0.08 1.30 11.09 -17.96 -0.20 1.10 16 16 N -0.51 -9.30 10.34 -13.50 -0.14 -9.44 16 17 C 0.12 2.13 11.23 -17.44 -0.20 1.94 16 18 C -0.03 -0.69 6.91 -83.88 -0.58 -1.27 16 19 N -0.53 -10.71 3.23 -122.42 -0.40 -11.11 16 20 C 0.08 1.22 9.26 59.85 0.55 1.77 16 21 H 0.05 1.14 7.03 -51.93 -0.37 0.78 16 22 H 0.09 1.91 6.70 -51.93 -0.35 1.56 16 23 H 0.03 0.57 5.31 -51.93 -0.28 0.29 16 24 H 0.27 6.45 8.31 -40.82 -0.34 6.12 16 25 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 26 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.06 0.82 7.48 -51.93 -0.39 0.43 16 29 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 30 H 0.09 1.34 5.37 -51.93 -0.28 1.06 16 LS Contribution 254.80 15.07 3.84 3.84 Total: -1.00 -29.61 254.80 -8.35 -37.96 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -2.88 Total: 2.10 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -3.84 Total: 8.43 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -0.44 Total: -67.01 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.61 -8.35 -37.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260604987.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.806 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds