Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36958 * 120.00177 * 2 1 4 4 H 1.08000 * 119.99666 * 204.31717 * 3 2 1 5 5 C 1.38835 * 119.99991 * 24.31181 * 3 2 1 6 6 N 1.31531 * 119.99909 * 12.61019 * 5 3 2 7 7 Si 1.86797 * 119.99983 * 192.60943 * 5 3 2 8 8 H 1.48497 * 109.47007 * 90.00226 * 7 5 3 9 9 H 1.48505 * 109.47160 * 210.00107 * 7 5 3 10 10 H 1.48506 * 109.46992 * 329.99873 * 7 5 3 11 11 C 1.37739 * 119.99681 * 179.97438 * 2 1 3 12 12 N 1.31260 * 125.06841 * 174.01248 * 11 2 1 13 13 C 1.35122 * 109.63621 * 179.97438 * 12 11 2 14 14 C 1.40055 * 134.62566 * 180.02562 * 13 12 11 15 15 C 1.36616 * 118.82476 * 179.97438 * 14 13 12 16 16 N 1.32234 * 121.47015 * 0.02562 * 15 14 13 17 17 C 1.31951 * 122.31894 * 359.97438 * 16 15 14 18 18 C 1.38400 * 120.22925 * 359.97438 * 17 16 15 19 19 N 1.36615 * 125.07327 * 353.98312 * 11 2 1 20 20 C 1.46502 * 126.39050 * 359.76734 * 19 11 2 21 21 H 1.09001 * 109.47707 * 264.52944 * 1 2 3 22 22 H 1.08999 * 109.46871 * 24.53141 * 1 2 3 23 23 H 1.09000 * 109.47187 * 144.52750 * 1 2 3 24 24 H 0.97000 * 119.99808 * 179.97438 * 6 5 3 25 25 H 1.07998 * 120.58811 * 359.95002 * 14 13 12 26 26 H 1.08000 * 119.26113 * 180.02562 * 15 14 13 27 27 H 1.07994 * 119.88213 * 180.02562 * 17 16 15 28 28 H 1.08998 * 109.46829 * 83.78781 * 20 19 11 29 29 H 1.09000 * 109.46805 * 203.78576 * 20 19 11 30 30 H 1.09000 * 109.47266 * 323.77977 * 20 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.1579 1.2275 -0.3852 5 6 1.5480 2.3351 0.4950 6 7 0.4316 2.2478 1.1849 7 14 2.3238 4.0051 0.1812 8 1 1.7893 4.5693 -1.0841 9 1 2.0019 4.9198 1.3060 10 1 3.7972 3.8539 0.0724 11 6 2.1536 -1.1929 0.0005 12 7 3.4560 -1.3119 -0.1115 13 6 3.7975 -2.6187 -0.0728 14 6 5.0065 -3.3221 -0.1447 15 6 4.9804 -4.6860 -0.0692 16 7 3.8442 -5.3482 0.0688 17 6 2.6765 -4.7380 0.1419 18 6 2.6063 -3.3574 0.0753 19 7 1.5831 -2.4286 0.1183 20 6 0.1544 -2.7156 0.2688 21 1 -0.3634 -0.0980 1.0229 22 1 -0.3633 0.9349 -0.4267 23 1 -0.3633 -0.8369 -0.5964 24 1 0.0113 3.0506 1.5311 25 1 5.9427 -2.7958 -0.2582 26 1 5.9086 -5.2355 -0.1235 27 1 1.7725 -5.3180 0.2550 28 1 -0.3187 -2.7301 -0.7131 29 1 0.0273 -3.6864 0.7477 30 1 -0.3085 -1.9438 0.8838 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260604987.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = 98.136487 kcal Electronic energy + Delta-G solvation = -15966.485903 eV Core-core repulsion = 13377.058828 eV Total energy + Delta-G solvation = -2589.427076 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.95679 -39.59692 -37.60724 -35.24435 -33.75870 -31.83043 -30.43543 -28.69890 -27.76279 -26.16463 -23.52362 -23.22866 -21.52875 -19.40224 -18.24997 -18.00918 -17.36589 -17.03786 -16.41344 -15.85592 -15.53093 -15.06937 -14.88870 -14.57266 -14.33618 -14.07080 -13.52552 -13.29711 -12.91648 -12.83433 -12.52911 -12.22911 -12.08730 -11.31906 -11.21707 -10.79653 -10.43955 -10.32103 -9.15667 -8.74151 -8.35457 -5.90532 0.13790 0.62093 1.38691 1.42018 1.50210 1.65589 2.12358 2.29682 2.76860 2.99372 3.17479 3.59677 3.74518 3.93491 4.10715 4.21640 4.32108 4.41188 4.58573 4.64427 4.77643 4.82719 5.07798 5.13976 5.36757 5.37819 5.59641 5.70203 5.94830 6.31021 6.54431 7.04363 7.22410 7.32629 7.67061 8.64382 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.040227 B = 0.007620 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.883153 B = 3673.724452 C = 4296.734755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.438 5.438 3 C -0.315 4.315 4 H 0.083 0.917 5 C -0.007 4.007 6 N -0.902 5.902 7 Si 0.996 3.004 8 H -0.266 1.266 9 H -0.276 1.276 10 H -0.273 1.273 11 C 0.516 3.484 12 N -0.613 5.613 13 C 0.099 3.901 14 C -0.172 4.172 15 C 0.085 3.915 16 N -0.511 5.511 17 C 0.131 3.869 18 C -0.045 4.045 19 N -0.522 5.522 20 C 0.071 3.929 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.274 0.726 25 H 0.138 0.862 26 H 0.187 0.813 27 H 0.177 0.823 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 -8.189 -1.788 8.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.142 5.142 3 C -0.444 4.444 4 H 0.101 0.899 5 C -0.209 4.209 6 N -0.540 5.540 7 Si 0.819 3.181 8 H -0.191 1.191 9 H -0.201 1.201 10 H -0.198 1.198 11 C 0.164 3.836 12 N -0.349 5.349 13 C -0.031 4.031 14 C -0.196 4.196 15 C -0.067 4.067 16 N -0.223 5.223 17 C -0.033 4.033 18 C -0.155 4.155 19 N -0.223 5.223 20 C -0.070 4.070 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.155 0.845 26 H 0.204 0.796 27 H 0.194 0.806 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.653 -8.124 -1.718 8.467 hybrid contribution -0.366 1.524 0.098 1.570 sum -2.019 -6.600 -1.620 7.089 Atomic orbital electron populations 1.21820 0.77679 1.01655 1.00329 1.41739 1.05152 0.99415 1.67878 1.19675 1.00796 0.83849 1.40040 0.89896 1.26109 0.97374 1.02911 0.94476 1.70100 1.19684 1.30864 1.33368 0.84875 0.78393 0.76595 0.78203 1.19109 1.20129 1.19824 1.20374 0.86902 0.81581 0.94751 1.70580 1.09069 1.17521 1.37714 1.19752 0.94915 0.89661 0.98742 1.21008 0.95787 0.95110 1.07742 1.22368 0.97097 0.90324 0.96961 1.67789 0.98133 1.39355 1.17064 1.21871 0.97397 0.86392 0.97636 1.19971 0.89028 0.93940 1.12600 1.44911 1.07886 1.03332 1.66218 1.22473 0.76218 1.04607 1.03666 0.93623 0.91311 0.91634 0.91646 0.84455 0.79596 0.80597 0.89879 0.87287 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.35 7.23 127.77 0.92 6.27 16 2 N -0.44 -22.01 3.09 -545.78 -1.68 -23.69 16 3 C -0.31 -17.14 9.40 84.04 0.79 -16.36 16 4 H 0.08 4.79 7.57 -2.91 -0.02 4.76 16 5 C -0.01 -0.35 5.04 84.88 0.43 0.08 16 6 N -0.90 -46.14 10.83 21.65 0.23 -45.90 16 7 Si 1.00 41.26 29.57 68.60 2.03 43.28 16 8 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 9 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 C 0.52 25.24 8.15 260.44 2.12 27.36 16 12 N -0.61 -31.82 10.62 -190.12 -2.02 -33.84 16 13 C 0.10 4.43 7.29 39.74 0.29 4.72 16 14 C -0.17 -6.32 10.13 22.33 0.23 -6.10 16 15 C 0.08 2.61 11.09 84.25 0.93 3.54 16 16 N -0.51 -16.65 10.34 -196.62 -2.03 -18.68 16 17 C 0.13 4.24 11.23 84.71 0.95 5.19 16 18 C -0.05 -1.77 6.91 38.83 0.27 -1.51 16 19 N -0.52 -20.60 3.23 -541.22 -1.75 -22.35 16 20 C 0.07 1.94 9.26 127.77 1.18 3.13 16 21 H 0.05 1.94 7.03 -2.39 -0.02 1.93 16 22 H 0.07 3.09 6.70 -2.39 -0.02 3.07 16 23 H 0.07 2.22 5.31 -2.39 -0.01 2.21 16 24 H 0.27 13.18 8.31 -92.71 -0.77 12.40 16 25 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 27 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.08 1.94 7.48 -2.39 -0.02 1.92 16 29 H 0.11 2.23 8.13 -2.39 -0.02 2.21 16 30 H 0.09 2.45 5.37 -2.39 -0.01 2.43 16 Total: -1.00 -66.01 254.80 4.06 -61.95 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.16 Total: 12.88 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 8.12 Total: 26.34 kcal Atomic # 7 Polarization: -137.21 SS G_CDS: -7.25 Total: -144.46 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -66.01 4.06 -61.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260604987.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.088 kcal (2) G-P(sol) polarization free energy of solvation -66.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds