Wall clock time and date at job start Mon Mar 30 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38180 * 120.00782 * 2 1 4 4 C 1.38317 * 120.01993 * 180.02562 * 3 2 1 5 5 C 1.38134 * 120.34702 * 0.35331 * 4 3 2 6 6 C 1.39083 * 120.22466 * 359.45882 * 5 4 3 7 7 C 1.38865 * 120.00865 * 180.02562 * 2 1 3 8 8 N 1.39838 * 119.47930 * 359.46165 * 7 2 1 9 9 C 1.36809 * 121.16018 * 348.58923 * 8 7 2 10 10 H 1.07995 * 120.00090 * 307.89244 * 9 8 7 11 11 C 1.38753 * 119.99502 * 127.89366 * 9 8 7 12 12 N 1.31622 * 120.00463 * 353.06241 * 11 9 8 13 13 Si 1.86806 * 119.99514 * 173.05992 * 11 9 8 14 14 H 1.48503 * 109.46874 * 60.00353 * 13 11 9 15 15 H 1.48505 * 109.46998 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47498 * 299.99829 * 13 11 9 17 17 C 1.47267 * 117.67810 * 168.61137 * 8 7 2 18 18 C 1.53498 * 107.24118 * 41.21675 * 17 8 7 19 19 N 1.39472 * 118.87469 * 179.91633 * 6 5 4 20 20 C 1.46901 * 111.00331 * 32.01260 * 19 6 5 21 21 H 1.09002 * 109.47208 * 124.09047 * 1 2 3 22 22 H 1.08999 * 109.47046 * 244.08811 * 1 2 3 23 23 H 1.09000 * 109.47345 * 4.09392 * 1 2 3 24 24 H 1.08002 * 119.99313 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.83264 * 180.02562 * 4 3 2 26 26 H 1.08003 * 119.88561 * 179.74035 * 5 4 3 27 27 H 0.96998 * 119.99952 * 179.97438 * 12 11 9 28 28 H 1.09001 * 109.90355 * 281.78740 * 17 8 7 29 29 H 1.08997 * 109.90134 * 160.65315 * 17 8 7 30 30 H 1.09007 * 109.53079 * 178.46466 * 18 17 8 31 31 H 1.09001 * 109.59867 * 58.27577 * 18 17 8 32 32 H 1.08994 * 109.47300 * 60.00204 * 20 19 6 33 33 H 1.08997 * 109.47120 * 180.02562 * 20 19 6 34 34 H 1.08997 * 109.46738 * 299.99667 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1966 0.0000 4 6 3.5812 1.1969 -0.0005 5 6 4.2794 0.0050 -0.0084 6 6 3.5963 -1.2066 -0.0045 7 6 2.2015 -1.2025 -0.0005 8 7 1.4915 -2.4072 0.0104 9 6 0.1454 -2.4334 0.2530 10 1 -0.2552 -1.9432 1.1280 11 6 -0.7051 -3.0899 -0.6250 12 7 -0.2386 -3.5691 -1.7587 13 14 -2.5122 -3.2938 -0.1979 14 1 -3.1346 -1.9562 -0.0281 15 1 -3.2002 -4.0240 -1.2928 16 1 -2.6385 -4.0627 1.0662 17 6 2.2436 -3.6468 -0.2480 18 6 3.5755 -3.5366 0.5069 19 7 4.3294 -2.3931 -0.0145 20 6 5.6024 -2.2314 0.7004 21 1 -0.3634 -0.5760 -0.8511 22 1 -0.3633 -0.4491 0.9243 23 1 -0.3634 1.0250 -0.0734 24 1 1.6580 2.1319 0.0004 25 1 4.1183 2.1339 -0.0001 26 1 5.3593 0.0139 -0.0130 27 1 -0.8332 -4.0283 -2.3723 28 1 2.4305 -3.7514 -1.3168 29 1 1.6801 -4.5055 0.1169 30 1 4.1527 -4.4500 0.3629 31 1 3.3824 -3.3914 1.5698 32 1 5.4051 -1.9513 1.7351 33 1 6.1542 -3.1712 0.6770 34 1 6.1929 -1.4518 0.2191 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260637065.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:52 Heat of formation + Delta-G solvation = 42.105031 kcal Electronic energy + Delta-G solvation = -16868.333752 eV Core-core repulsion = 14380.017313 eV Total energy + Delta-G solvation = -2488.316438 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31558 -37.71820 -37.30089 -33.81696 -32.36750 -31.29333 -29.62491 -27.59854 -26.30011 -24.75587 -24.38763 -21.62238 -20.49543 -19.20450 -17.84908 -16.95182 -16.89648 -16.52932 -15.52905 -15.15039 -14.99239 -14.84685 -14.35603 -14.20470 -13.76454 -13.52312 -13.06739 -12.98711 -12.82201 -12.64361 -12.52355 -12.45766 -12.19654 -12.09446 -11.62346 -11.39962 -10.68355 -10.50582 -10.18894 -8.64552 -8.29923 -7.58916 -5.87166 0.79120 1.04075 1.41447 1.44748 1.49892 2.31096 2.88538 3.02996 3.29936 3.35761 4.07172 4.11035 4.34240 4.40065 4.45428 4.59567 4.66254 4.72438 4.79419 4.84081 4.88788 5.00047 5.09006 5.15667 5.26305 5.27319 5.50322 5.56062 5.69720 5.78765 6.05605 6.20096 6.31432 6.36503 6.65889 6.92447 7.43881 8.00061 8.85261 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.028814 B = 0.010885 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.521209 B = 2571.815710 C = 3342.854853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.168 4.168 3 C -0.110 4.110 4 C -0.185 4.185 5 C -0.124 4.124 6 C -0.004 4.004 7 C 0.161 3.839 8 N -0.489 5.489 9 C -0.308 4.308 10 H 0.080 0.920 11 C -0.003 4.003 12 N -0.908 5.908 13 Si 0.967 3.033 14 H -0.263 1.263 15 H -0.287 1.287 16 H -0.267 1.267 17 C 0.150 3.850 18 C 0.049 3.951 19 N -0.503 5.503 20 C 0.031 3.969 21 H 0.042 0.958 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.128 0.872 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 3.447 4.838 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.174 4.174 3 C -0.129 4.129 4 C -0.206 4.206 5 C -0.145 4.145 6 C -0.105 4.105 7 C 0.051 3.949 8 N -0.185 5.185 9 C -0.436 4.436 10 H 0.097 0.903 11 C -0.204 4.204 12 N -0.545 5.545 13 Si 0.791 3.209 14 H -0.187 1.187 15 H -0.212 1.212 16 H -0.192 1.192 17 C 0.026 3.974 18 C -0.079 4.079 19 N -0.219 5.219 20 C -0.115 4.115 21 H 0.061 0.939 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.146 0.854 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.784 2.915 4.214 8.502 hybrid contribution -1.298 -0.368 0.401 1.407 sum 5.486 2.548 4.615 7.608 Atomic orbital electron populations 1.20714 0.91520 0.98810 1.01649 1.19527 0.96410 0.91838 1.09594 1.20899 0.94724 0.96090 1.01221 1.20766 0.93653 0.97734 1.08445 1.20939 0.99684 0.90444 1.03466 1.18560 0.90054 0.91070 1.10853 1.18454 0.90187 0.88356 0.97905 1.42445 1.05761 1.00946 1.69376 1.19318 0.81683 1.36222 1.06421 0.90309 1.26371 1.02964 0.97260 0.93846 1.70109 1.37349 1.37482 1.09549 0.85381 0.78728 0.78983 0.77782 1.18727 1.21226 1.19184 1.21337 0.90337 0.88400 0.97348 1.22384 0.95099 0.94233 0.96152 1.58389 1.06418 1.02959 1.54146 1.22525 0.89390 1.03809 0.95747 0.93881 0.92230 0.93313 0.85381 0.84404 0.84326 0.92726 0.95364 0.92083 0.87509 0.95024 0.95222 0.89302 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.16 8.13 71.23 0.58 -2.58 16 2 C -0.17 -7.70 5.88 -19.73 -0.12 -7.82 16 3 C -0.11 -4.22 9.67 22.27 0.22 -4.00 16 4 C -0.18 -6.40 10.03 22.26 0.22 -6.17 16 5 C -0.12 -4.50 9.06 22.45 0.20 -4.29 16 6 C 0.00 -0.16 5.88 38.43 0.23 0.07 16 7 C 0.16 7.89 6.34 38.31 0.24 8.14 16 8 N -0.49 -25.45 2.83 -508.51 -1.44 -26.89 16 9 C -0.31 -16.31 5.81 84.04 0.49 -15.82 16 10 H 0.08 4.13 5.61 -2.91 -0.02 4.11 16 11 C 0.00 -0.15 4.77 84.85 0.40 0.25 16 12 N -0.91 -51.44 12.63 21.64 0.27 -51.17 16 13 Si 0.97 41.68 29.56 68.60 2.03 43.71 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 C 0.15 7.19 5.50 86.40 0.47 7.66 16 18 C 0.05 1.87 5.62 86.54 0.49 2.36 16 19 N -0.50 -19.14 4.81 -719.45 -3.46 -22.59 16 20 C 0.03 0.85 8.87 127.69 1.13 1.98 16 21 H 0.04 2.20 6.44 -2.39 -0.02 2.18 16 22 H 0.06 2.70 5.56 -2.39 -0.01 2.68 16 23 H 0.05 1.84 7.88 -2.39 -0.02 1.83 16 24 H 0.13 4.16 7.95 -2.91 -0.02 4.14 16 25 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 26 H 0.14 4.08 5.95 -2.91 -0.02 4.06 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.03 1.50 8.12 -2.39 -0.02 1.48 16 29 H 0.06 2.96 8.02 -2.39 -0.02 2.94 16 30 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.99 8.12 -2.39 -0.02 1.97 16 34 H 0.09 2.09 6.19 -2.39 -0.01 2.07 16 Total: -1.00 -62.38 267.31 3.06 -59.32 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.09 Total: 17.84 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.56 Total: -20.23 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -4.62 Total: -100.65 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -62.38 3.06 -59.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637065.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.428 kcal (2) G-P(sol) polarization free energy of solvation -62.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds