Wall clock time and date at job start Mon Mar 30 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.46990 * 2 1 4 4 C 1.39026 * 125.53741 * 124.72003 * 3 2 1 5 5 C 1.38844 * 107.65541 * 179.87218 * 4 3 2 6 6 N 1.34346 * 131.41241 * 180.10880 * 5 4 3 7 7 C 1.31523 * 121.35106 * 180.30489 * 6 5 4 8 8 N 1.38097 * 120.42104 * 180.02562 * 7 6 5 9 9 C 1.47305 * 119.15533 * 359.97438 * 7 6 5 10 10 C 1.41163 * 120.92633 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99621 * 27.64520 * 10 9 7 12 12 C 1.39867 * 120.00083 * 207.65003 * 10 9 7 13 13 N 1.30920 * 119.99926 * 12.61442 * 12 10 9 14 14 Si 1.86799 * 120.00004 * 192.61881 * 12 10 9 15 15 H 1.48501 * 109.47128 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47027 * 119.99824 * 14 12 10 17 17 H 1.48498 * 109.46878 * 239.99481 * 14 12 10 18 18 C 1.39313 * 118.14708 * 359.97438 * 9 7 6 19 19 N 1.36205 * 118.90704 * 0.03102 * 18 9 7 20 20 N 1.31174 * 125.54466 * 305.02346 * 3 2 1 21 21 H 1.09001 * 109.47394 * 299.99890 * 1 2 3 22 22 H 1.09007 * 109.47118 * 60.00215 * 1 2 3 23 23 H 1.09000 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46939 * 240.00383 * 2 1 3 25 25 H 1.08999 * 109.46942 * 120.00615 * 2 1 3 26 26 H 1.07997 * 126.16869 * 359.97438 * 4 3 2 27 27 H 0.96994 * 120.00224 * 354.89081 * 8 7 6 28 28 H 0.97006 * 120.00409 * 174.88398 * 8 7 6 29 29 H 0.97005 * 119.99931 * 174.98630 * 13 12 10 30 30 H 1.08000 * 120.54640 * 180.02562 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9091 1.9679 0.9299 5 6 3.1229 3.2938 0.5778 6 7 3.8787 4.2517 1.1399 7 6 3.9323 5.4652 0.6353 8 7 4.7161 6.4351 1.2285 9 6 3.1465 5.7760 -0.5713 10 6 3.1768 7.0657 -1.1444 11 1 4.0495 7.6902 -1.0230 12 6 2.0765 7.5348 -1.8695 13 7 0.9352 6.8958 -1.8138 14 14 2.2356 9.0728 -2.9176 15 1 3.6182 9.6041 -2.8102 16 1 1.9418 8.7389 -4.3344 17 1 1.2732 10.0983 -2.4409 18 6 2.3734 4.7615 -1.1315 19 7 2.3750 3.5322 -0.5449 20 7 1.7089 2.3439 -0.8740 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.3464 1.4537 1.7729 27 1 5.1730 6.2461 2.0630 28 1 4.8100 7.3055 0.8106 29 1 0.1532 7.2601 -2.2573 30 1 1.7826 4.9466 -2.0164 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260661455.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:40 Heat of formation + Delta-G solvation = 69.716878 kcal Electronic energy + Delta-G solvation = -15650.421803 eV Core-core repulsion = 13059.762361 eV Total energy + Delta-G solvation = -2590.659442 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.38683 -39.04920 -36.04553 -35.65986 -33.67573 -33.08064 -30.67883 -29.31247 -27.13321 -24.84537 -23.83869 -22.90055 -20.92158 -19.30132 -19.09599 -18.05520 -17.06270 -16.64268 -16.35467 -15.96551 -15.07762 -14.83650 -14.66786 -14.49925 -14.06555 -13.80002 -13.37600 -13.05509 -12.94103 -12.61163 -12.27439 -12.17805 -11.94443 -11.54571 -11.44140 -10.96696 -10.89714 -10.40682 -9.22702 -8.71917 -8.39615 -6.41950 0.45654 0.61280 1.42735 1.47479 1.59486 1.89731 2.01389 2.18070 2.57256 2.65972 3.26835 3.63882 3.80715 4.14684 4.40999 4.46106 4.53170 4.85420 4.91469 5.06326 5.09430 5.12289 5.21834 5.39418 5.40918 5.58300 5.78470 5.98873 6.21863 6.45869 6.59046 6.66379 6.81163 7.14603 7.47844 8.25047 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.031357 B = 0.007800 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.724542 B = 3588.834278 C = 4367.829378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 C 0.079 3.921 4 C -0.329 4.329 5 C 0.238 3.762 6 N -0.578 5.578 7 C 0.427 3.573 8 N -0.802 5.802 9 C -0.009 4.009 10 C -0.450 4.450 11 H 0.113 0.887 12 C 0.025 3.975 13 N -0.832 5.832 14 Si 0.998 3.002 15 H -0.241 1.241 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.042 4.042 19 N -0.290 5.290 20 N -0.383 5.383 21 H 0.043 0.957 22 H 0.037 0.963 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.157 0.843 27 H 0.411 0.589 28 H 0.423 0.577 29 H 0.291 0.709 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -0.849 2.132 3.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.077 4.077 4 C -0.362 4.362 5 C 0.005 3.995 6 N -0.307 5.307 7 C 0.163 3.837 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.481 4.481 11 H 0.131 0.869 12 C -0.189 4.189 13 N -0.458 5.458 14 Si 0.818 3.182 15 H -0.164 1.164 16 H -0.202 1.202 17 H -0.194 1.194 18 C -0.173 4.173 19 N -0.060 5.060 20 N -0.211 5.211 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.123 0.877 26 H 0.175 0.825 27 H 0.243 0.757 28 H 0.257 0.743 29 H 0.101 0.899 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.452 -1.058 1.603 3.115 hybrid contribution -0.113 1.055 -0.271 1.095 sum 2.338 -0.003 1.332 2.691 Atomic orbital electron populations 1.21651 0.94180 1.02744 1.01010 1.20073 0.96435 0.86208 1.04347 1.22568 0.95611 0.97306 0.92254 1.20706 1.15014 0.91612 1.08835 1.20435 0.94635 0.95895 0.88516 1.67332 1.27523 1.00343 1.35485 1.20530 0.87949 0.87188 0.88042 1.41685 1.51341 1.14043 1.27925 1.18938 0.95544 0.94699 0.92708 1.19532 1.02699 0.97808 1.28058 0.86895 1.26921 0.93647 1.02451 0.95907 1.69860 1.01566 1.39401 1.34935 0.84898 0.80474 0.75782 0.77069 1.16360 1.20189 1.19388 1.21906 1.12872 0.79995 1.02492 1.46531 1.30406 1.08958 1.20121 1.77341 1.24986 0.90787 1.27986 0.93807 0.94384 0.89075 0.89529 0.87684 0.82547 0.75721 0.74330 0.89858 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.87 71.98 0.71 -3.22 16 2 C -0.03 -0.97 6.50 29.85 0.19 -0.78 16 3 C 0.08 3.48 6.44 42.84 0.28 3.75 16 4 C -0.33 -15.18 10.82 22.60 0.24 -14.93 16 5 C 0.24 12.46 7.88 133.08 1.05 13.51 16 6 N -0.58 -28.34 10.48 -185.26 -1.94 -30.28 16 7 C 0.43 19.43 8.00 135.80 1.09 20.52 16 8 N -0.80 -26.21 8.99 -50.88 -0.46 -26.67 16 9 C -0.01 -0.47 5.71 -19.92 -0.11 -0.58 16 10 C -0.45 -20.61 8.62 23.38 0.20 -20.41 16 11 H 0.11 4.41 6.88 -2.91 -0.02 4.39 16 12 C 0.03 1.15 5.24 85.22 0.45 1.60 16 13 N -0.83 -41.74 10.92 21.82 0.24 -41.51 16 14 Si 1.00 33.89 29.58 68.60 2.03 35.92 16 15 H -0.24 -7.42 7.11 99.48 0.71 -6.71 16 16 H -0.28 -9.60 7.11 99.48 0.71 -8.90 16 17 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 18 C -0.04 -2.36 10.00 84.27 0.84 -1.52 16 19 N -0.29 -16.08 3.85 -189.76 -0.73 -16.81 16 20 N -0.38 -19.91 12.60 -47.75 -0.60 -20.51 16 21 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.10 2.58 8.11 -2.39 -0.02 2.57 16 26 H 0.16 6.24 8.06 -2.91 -0.02 6.22 16 27 H 0.41 11.14 8.95 -92.71 -0.83 10.31 16 28 H 0.42 11.84 7.33 -92.70 -0.68 11.16 16 29 H 0.29 13.35 8.31 -92.70 -0.77 12.58 16 30 H 0.15 8.63 6.27 -2.91 -0.02 8.61 16 Total: -1.00 -66.33 263.30 3.16 -63.17 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.32 Total: 38.75 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 4.94 Total: -2.06 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -3.49 Total: -135.78 kcal Atomic # 14 Polarization: 33.89 SS G_CDS: 2.03 Total: 35.92 kcal Total: -66.33 3.16 -63.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260661455.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.888 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds