Wall clock time and date at job start Mon Mar 30 2020 03:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38372 * 119.98947 * 2 1 4 4 C 1.38084 * 120.34684 * 180.39212 * 3 2 1 5 5 C 1.39133 * 120.22745 * 359.46221 * 4 3 2 6 6 C 1.39440 * 119.24131 * 0.27434 * 5 4 3 7 7 C 1.38127 * 119.99275 * 179.97438 * 2 1 3 8 8 N 1.39841 * 120.34400 * 180.42217 * 6 5 4 9 9 C 1.36803 * 121.15764 * 168.08980 * 8 6 5 10 10 H 1.07996 * 120.00100 * 335.17948 * 9 8 6 11 11 C 1.38757 * 119.99884 * 155.17683 * 9 8 6 12 12 N 1.31629 * 119.99714 * 345.74527 * 11 9 8 13 13 Si 1.86798 * 120.00279 * 165.74765 * 11 9 8 14 14 H 1.48505 * 109.46939 * 59.99638 * 13 11 9 15 15 H 1.48493 * 109.47253 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46876 * 300.00078 * 13 11 9 17 17 C 1.47260 * 117.68248 * 348.11429 * 8 6 5 18 18 C 1.53485 * 107.25520 * 41.23390 * 17 8 6 19 19 N 1.39470 * 118.88170 * 179.66861 * 5 4 3 20 20 C 1.46906 * 111.00032 * 31.99256 * 19 5 4 21 21 H 1.09006 * 109.47271 * 89.99975 * 1 2 3 22 22 H 1.08993 * 109.47439 * 210.00144 * 1 2 3 23 23 H 1.09005 * 109.47330 * 330.00308 * 1 2 3 24 24 H 1.07997 * 119.82461 * 0.12051 * 3 2 1 25 25 H 1.08002 * 119.88731 * 179.73763 * 4 3 2 26 26 H 1.08003 * 120.00713 * 0.02562 * 7 2 1 27 27 H 0.97004 * 119.99561 * 179.97438 * 12 11 9 28 28 H 1.08998 * 109.89621 * 281.79464 * 17 8 6 29 29 H 1.09004 * 109.90094 * 160.66773 * 17 8 6 30 30 H 1.09002 * 109.53545 * 178.52334 * 18 17 8 31 31 H 1.08999 * 109.53803 * 58.29223 * 18 17 8 32 32 H 1.09001 * 109.46577 * 56.05144 * 20 19 5 33 33 H 1.08998 * 109.46585 * 176.04876 * 20 19 5 34 34 H 1.08997 * 109.46969 * 296.04621 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1985 0.0000 4 6 3.5795 1.2071 -0.0082 5 6 4.2874 0.0093 -0.0052 6 6 3.5866 -1.1961 0.0003 7 6 2.1975 -1.1963 0.0005 8 7 4.2749 -2.4134 0.0123 9 6 3.6250 -3.5916 0.2594 10 1 2.7052 -3.5925 0.8254 11 6 4.1476 -4.7854 -0.2171 12 7 5.0955 -4.7708 -1.1303 13 14 3.5059 -6.4131 0.4371 14 1 2.0516 -6.5207 0.1564 15 1 4.2220 -7.5309 -0.2283 16 1 3.7335 -6.4816 1.9030 17 6 5.7236 -2.3827 -0.2498 18 6 6.2967 -1.1729 0.5010 19 7 5.6814 0.0508 -0.0207 20 6 6.1809 1.2355 0.6901 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6556 2.1320 0.0020 25 1 4.1117 2.1468 -0.0124 26 1 1.6575 -2.1316 0.0005 27 1 5.4612 -5.6053 -1.4631 28 1 5.9049 -2.2756 -1.3193 29 1 6.1863 -3.2995 0.1159 30 1 7.3758 -1.1299 0.3532 31 1 6.0769 -1.2664 1.5645 32 1 5.7861 1.2428 1.7061 33 1 7.2699 1.2067 0.7236 34 1 5.8571 2.1358 0.1678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260697314.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:17 Heat of formation + Delta-G solvation = 47.061875 kcal Electronic energy + Delta-G solvation = -16521.528512 eV Core-core repulsion = 14033.427018 eV Total energy + Delta-G solvation = -2488.101493 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.60583 -36.26748 -35.51814 -32.00562 -31.11466 -29.22639 -28.06852 -26.25566 -24.81813 -23.32744 -22.07027 -20.74859 -18.52492 -17.20689 -16.45619 -15.30678 -15.20128 -14.67657 -13.81057 -13.46865 -13.25675 -13.17912 -13.09436 -12.91524 -12.49792 -11.85546 -11.65878 -11.44271 -11.17709 -11.14021 -11.04363 -10.77251 -10.61445 -10.45284 -10.10582 -9.75616 -9.26539 -8.84828 -8.50371 -7.16360 -6.45201 -6.19002 -3.70478 2.42187 2.64222 3.17493 3.18745 3.20864 4.05980 4.41553 4.76932 4.94850 5.13254 5.51667 5.66108 5.79113 5.83372 5.83659 5.92853 6.07349 6.13055 6.17946 6.18359 6.29332 6.38614 6.45403 6.73862 6.83084 7.04458 7.18402 7.23437 7.26417 7.38068 7.68217 7.79779 7.87659 7.97527 8.30533 8.65918 9.29814 9.70181 10.67276 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.010462 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.413522 B = 2675.775495 C = 3719.214405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.065 4.065 3 C -0.210 4.210 4 C -0.107 4.107 5 C 0.000 4.000 6 C 0.191 3.809 7 C -0.192 4.192 8 N -0.458 5.458 9 C -0.296 4.296 10 H 0.091 0.909 11 C 0.024 3.976 12 N -0.878 5.878 13 Si 0.924 3.076 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.275 1.275 17 C 0.150 3.850 18 C 0.032 3.968 19 N -0.489 5.489 20 C 0.031 3.969 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.269 0.731 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 6.624 3.199 7.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.067 4.067 3 C -0.232 4.232 4 C -0.129 4.129 5 C -0.101 4.101 6 C 0.075 3.925 7 C -0.217 4.217 8 N -0.147 5.147 9 C -0.424 4.424 10 H 0.109 0.891 11 C -0.179 4.179 12 N -0.515 5.515 13 Si 0.751 3.249 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.200 1.200 17 C 0.026 3.974 18 C -0.095 4.095 19 N -0.205 5.205 20 C -0.116 4.116 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.135 0.865 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.050 6.161 2.620 6.695 hybrid contribution -0.368 -0.910 0.864 1.308 sum -0.318 5.252 3.484 6.310 Atomic orbital electron populations 1.20652 0.92916 1.01303 1.01125 1.19388 0.94395 0.92999 0.99925 1.20077 0.93303 0.96121 1.13746 1.20470 0.93934 0.95031 1.03497 1.18102 0.86877 0.92692 1.12472 1.17798 0.91400 0.85246 0.98066 1.20233 0.91926 0.97156 1.12348 1.42728 1.04999 1.02360 1.64619 1.19414 1.09252 0.82718 1.30992 0.89104 1.25328 0.97623 0.99678 0.95299 1.70046 1.27605 1.28026 1.25790 0.86021 0.79009 0.80943 0.78921 1.19819 1.20855 1.20006 1.21559 0.81623 0.95279 0.98923 1.22585 0.98570 0.91033 0.97360 1.58502 1.05408 1.03502 1.53115 1.22394 0.99569 0.93396 0.96229 0.92278 0.92455 0.92720 0.88345 0.87559 0.86540 0.92096 0.92070 0.88788 0.90517 0.94708 0.95331 0.91931 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.01 36.01 0.36 -1.28 16 2 C -0.07 -1.31 5.88 -104.61 -0.62 -1.92 16 3 C -0.21 -4.03 9.68 -39.59 -0.38 -4.42 16 4 C -0.11 -2.13 9.06 -39.31 -0.36 -2.48 16 5 C 0.00 0.00 5.87 -83.60 -0.49 -0.49 16 6 C 0.19 4.67 6.34 -83.51 -0.53 4.14 16 7 C -0.19 -4.41 8.88 -39.37 -0.35 -4.76 16 8 N -0.46 -11.81 3.03 -112.09 -0.34 -12.15 16 9 C -0.30 -7.83 8.83 -15.14 -0.13 -7.96 16 10 H 0.09 2.36 6.78 -52.49 -0.36 2.00 16 11 C 0.02 0.63 5.03 -17.45 -0.09 0.54 16 12 N -0.88 -23.49 11.09 55.49 0.62 -22.87 16 13 Si 0.92 20.08 29.58 -169.99 -5.03 15.05 16 14 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 C 0.15 3.57 5.12 -3.38 -0.02 3.55 16 18 C 0.03 0.65 5.60 -3.75 -0.02 0.62 16 19 N -0.49 -9.84 4.81 -178.75 -0.86 -10.70 16 20 C 0.03 0.49 8.77 60.07 0.53 1.02 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 23 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 24 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 25 H 0.11 1.82 6.04 -52.49 -0.32 1.51 16 26 H 0.12 2.73 6.57 -52.48 -0.34 2.38 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.06 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.09 2.31 6.59 -51.93 -0.34 1.97 16 30 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -28.21 272.59 -8.22 -36.43 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.62 Total: 3.57 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -2.10 Total: -13.44 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.58 Total: -45.72 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.05 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.21 -8.22 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260697314.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.491 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds