Wall clock time and date at job start Mon Mar 30 2020 03:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38372 * 119.98947 * 2 1 4 4 C 1.38084 * 120.34684 * 180.39212 * 3 2 1 5 5 C 1.39133 * 120.22745 * 359.46221 * 4 3 2 6 6 C 1.39440 * 119.24131 * 0.27434 * 5 4 3 7 7 C 1.38127 * 119.99275 * 179.97438 * 2 1 3 8 8 N 1.39841 * 120.34400 * 180.42217 * 6 5 4 9 9 C 1.36803 * 121.15764 * 168.08980 * 8 6 5 10 10 H 1.07996 * 120.00100 * 335.17948 * 9 8 6 11 11 C 1.38757 * 119.99884 * 155.17683 * 9 8 6 12 12 N 1.31629 * 119.99714 * 345.74527 * 11 9 8 13 13 Si 1.86798 * 120.00279 * 165.74765 * 11 9 8 14 14 H 1.48505 * 109.46939 * 59.99638 * 13 11 9 15 15 H 1.48493 * 109.47253 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46876 * 300.00078 * 13 11 9 17 17 C 1.47260 * 117.68248 * 348.11429 * 8 6 5 18 18 C 1.53485 * 107.25520 * 41.23390 * 17 8 6 19 19 N 1.39470 * 118.88170 * 179.66861 * 5 4 3 20 20 C 1.46906 * 111.00032 * 31.99256 * 19 5 4 21 21 H 1.09006 * 109.47271 * 89.99975 * 1 2 3 22 22 H 1.08993 * 109.47439 * 210.00144 * 1 2 3 23 23 H 1.09005 * 109.47330 * 330.00308 * 1 2 3 24 24 H 1.07997 * 119.82461 * 0.12051 * 3 2 1 25 25 H 1.08002 * 119.88731 * 179.73763 * 4 3 2 26 26 H 1.08003 * 120.00713 * 0.02562 * 7 2 1 27 27 H 0.97004 * 119.99561 * 179.97438 * 12 11 9 28 28 H 1.08998 * 109.89621 * 281.79464 * 17 8 6 29 29 H 1.09004 * 109.90094 * 160.66773 * 17 8 6 30 30 H 1.09002 * 109.53545 * 178.52334 * 18 17 8 31 31 H 1.08999 * 109.53803 * 58.29223 * 18 17 8 32 32 H 1.09001 * 109.46577 * 56.05144 * 20 19 5 33 33 H 1.08998 * 109.46585 * 176.04876 * 20 19 5 34 34 H 1.08997 * 109.46969 * 296.04621 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1985 0.0000 4 6 3.5795 1.2071 -0.0082 5 6 4.2874 0.0093 -0.0052 6 6 3.5866 -1.1961 0.0003 7 6 2.1975 -1.1963 0.0005 8 7 4.2749 -2.4134 0.0123 9 6 3.6250 -3.5916 0.2594 10 1 2.7052 -3.5925 0.8254 11 6 4.1476 -4.7854 -0.2171 12 7 5.0955 -4.7708 -1.1303 13 14 3.5059 -6.4131 0.4371 14 1 2.0516 -6.5207 0.1564 15 1 4.2220 -7.5309 -0.2283 16 1 3.7335 -6.4816 1.9030 17 6 5.7236 -2.3827 -0.2498 18 6 6.2967 -1.1729 0.5010 19 7 5.6814 0.0508 -0.0207 20 6 6.1809 1.2355 0.6901 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6556 2.1320 0.0020 25 1 4.1117 2.1468 -0.0124 26 1 1.6575 -2.1316 0.0005 27 1 5.4612 -5.6053 -1.4631 28 1 5.9049 -2.2756 -1.3193 29 1 6.1863 -3.2995 0.1159 30 1 7.3758 -1.1299 0.3532 31 1 6.0769 -1.2664 1.5645 32 1 5.7861 1.2428 1.7061 33 1 7.2699 1.2067 0.7236 34 1 5.8571 2.1358 0.1678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260697314.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:16 Heat of formation + Delta-G solvation = 30.673103 kcal Electronic energy + Delta-G solvation = -16522.239182 eV Core-core repulsion = 14033.427018 eV Total energy + Delta-G solvation = -2488.812164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.25823 -37.87725 -37.22919 -33.87358 -32.65046 -30.86471 -29.77079 -27.72019 -26.52916 -24.99983 -23.67940 -22.43834 -20.20272 -19.04828 -18.12741 -16.95857 -16.90748 -16.39993 -15.48273 -14.99253 -14.86859 -14.75288 -14.72059 -14.38413 -14.05414 -13.55470 -13.16792 -12.94513 -12.76452 -12.70811 -12.58264 -12.45730 -12.27981 -12.15534 -11.78770 -11.40360 -11.10935 -10.41011 -10.32710 -8.84956 -8.33738 -7.95429 -5.68362 0.77561 0.97276 1.38884 1.45359 1.49698 2.26429 2.83666 2.96784 3.20881 3.38789 4.06606 4.10853 4.31222 4.33693 4.40917 4.50900 4.63930 4.74303 4.75632 4.85339 4.92660 4.95943 4.99096 5.05986 5.24147 5.29373 5.37190 5.45122 5.55435 5.64726 5.99354 6.12959 6.25010 6.30104 6.64785 6.76550 7.43764 7.82495 8.75853 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.010462 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.413522 B = 2675.775495 C = 3719.214405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.109 4.109 5 C -0.011 4.011 6 C 0.155 3.845 7 C -0.214 4.214 8 N -0.489 5.489 9 C -0.314 4.314 10 H 0.082 0.918 11 C -0.021 4.021 12 N -0.911 5.911 13 Si 0.990 3.010 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.269 1.269 17 C 0.161 3.839 18 C 0.045 3.955 19 N -0.501 5.501 20 C 0.031 3.969 21 H 0.071 0.929 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.140 0.860 26 H 0.097 0.903 27 H 0.268 0.732 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 9.037 3.896 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.073 4.073 3 C -0.217 4.217 4 C -0.130 4.130 5 C -0.113 4.113 6 C 0.042 3.958 7 C -0.240 4.240 8 N -0.182 5.182 9 C -0.443 4.443 10 H 0.100 0.900 11 C -0.221 4.221 12 N -0.550 5.550 13 Si 0.814 3.186 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.194 1.194 17 C 0.036 3.964 18 C -0.083 4.083 19 N -0.217 5.217 20 C -0.115 4.115 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.155 0.845 25 H 0.158 0.842 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.604 8.638 3.329 9.277 hybrid contribution -0.260 -1.399 0.625 1.554 sum -0.864 7.239 3.954 8.293 Atomic orbital electron populations 1.20700 0.89889 1.02773 1.02337 1.19859 0.96745 0.92161 0.98552 1.20616 0.93418 0.97222 1.10486 1.20915 0.94512 0.95423 1.02197 1.18478 0.88216 0.92690 1.11939 1.18329 0.92368 0.85931 0.99127 1.20369 0.91879 0.97912 1.13798 1.42823 1.05576 1.02601 1.67217 1.19563 1.09453 0.83911 1.31328 0.89990 1.26127 0.97995 1.02550 0.95428 1.70172 1.29091 1.28511 1.27227 0.85028 0.78359 0.76856 0.78381 1.19488 1.20460 1.19405 1.21287 0.81458 0.96344 0.97278 1.22471 0.99942 0.89759 0.96133 1.58494 1.04439 1.04706 1.54107 1.22533 1.01172 0.91897 0.95918 0.91060 0.92468 0.89845 0.84477 0.84214 0.88462 0.92261 0.95314 0.90720 0.87423 0.95346 0.95263 0.89395 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.90 10.01 71.24 0.71 -2.19 16 2 C -0.07 -2.72 5.88 -19.86 -0.12 -2.84 16 3 C -0.20 -6.77 9.68 22.27 0.22 -6.56 16 4 C -0.11 -3.96 9.06 22.45 0.20 -3.76 16 5 C -0.01 -0.50 5.87 38.43 0.23 -0.27 16 6 C 0.15 7.75 6.34 38.31 0.24 7.99 16 7 C -0.21 -10.06 8.88 22.40 0.20 -9.86 16 8 N -0.49 -26.44 3.03 -508.54 -1.54 -27.98 16 9 C -0.31 -17.54 8.83 84.04 0.74 -16.80 16 10 H 0.08 4.53 6.78 -2.91 -0.02 4.51 16 11 C -0.02 -1.15 5.03 84.85 0.43 -0.72 16 12 N -0.91 -51.23 11.09 21.64 0.24 -50.99 16 13 Si 0.99 42.65 29.58 68.60 2.03 44.68 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 15 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 C 0.16 8.01 5.12 86.40 0.44 8.45 16 18 C 0.04 1.79 5.60 86.53 0.48 2.27 16 19 N -0.50 -19.44 4.81 -719.43 -3.46 -22.90 16 20 C 0.03 0.86 8.77 127.69 1.12 1.98 16 21 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 23 H 0.08 1.94 8.09 -2.38 -0.02 1.92 16 24 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 25 H 0.14 4.10 6.04 -2.91 -0.02 4.08 16 26 H 0.10 4.80 6.57 -2.91 -0.02 4.78 16 27 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 3.91 6.59 -2.38 -0.02 3.89 16 30 H 0.11 3.55 8.13 -2.39 -0.02 3.53 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 33 H 0.09 2.03 8.06 -2.39 -0.02 2.01 16 34 H 0.09 2.13 6.43 -2.39 -0.02 2.11 16 Total: -1.00 -63.89 272.59 3.25 -60.63 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.08 Total: 18.86 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 4.90 Total: -22.31 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -4.76 Total: -101.86 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -63.89 3.25 -60.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260697314.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.304 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds