Wall clock time and date at job start Mon Mar 30 2020 02:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33344 * 125.69807 * 2 1 4 4 C 1.32308 * 109.13779 * 179.86070 * 3 2 1 5 5 C 1.40916 * 133.23782 * 180.10306 * 4 3 2 6 6 N 1.31131 * 119.69762 * 180.33532 * 5 4 3 7 7 C 1.33517 * 121.37364 * 359.97438 * 6 5 4 8 8 C 1.34996 * 121.25363 * 359.97438 * 7 6 5 9 9 N 1.36683 * 119.74022 * 0.02562 * 8 7 6 10 10 C 1.35460 * 125.69829 * 180.30014 * 2 1 3 11 11 C 1.50706 * 126.41699 * 359.97438 * 10 2 1 12 12 H 1.09004 * 109.47059 * 346.56616 * 11 10 2 13 13 N 1.46892 * 109.46942 * 226.56255 * 11 10 2 14 14 C 1.50701 * 109.47036 * 106.56298 * 11 10 2 15 15 H 1.08004 * 119.99730 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99978 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99772 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 119.99853 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.47286 * 89.99855 * 18 16 14 20 20 H 1.48498 * 109.47122 * 209.99791 * 18 16 14 21 21 H 1.48494 * 109.47522 * 329.99747 * 18 16 14 22 22 H 1.08998 * 109.47677 * 264.14453 * 1 2 3 23 23 H 1.09001 * 109.46945 * 24.14792 * 1 2 3 24 24 H 1.09001 * 109.47080 * 144.14758 * 1 2 3 25 25 H 1.08004 * 120.15062 * 0.31500 * 5 4 3 26 26 H 1.07998 * 119.37039 * 180.02562 * 7 6 5 27 27 H 1.07999 * 120.12917 * 180.02562 * 8 7 6 28 28 H 1.00900 * 111.00209 * 172.76639 * 13 11 10 29 29 H 1.00897 * 111.00248 * 296.72158 * 13 11 10 30 30 H 0.97005 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2850 1.0829 0.0000 4 6 3.5532 0.7058 0.0030 5 6 4.7711 1.4147 0.0063 6 7 5.9056 0.7570 0.0022 7 6 5.9352 -0.5778 -0.0044 8 6 4.7970 -1.3037 -0.0067 9 7 3.5872 -0.6676 -0.0028 10 6 2.2974 -1.1001 -0.0058 11 6 1.8345 -2.5343 -0.0127 12 1 0.7718 -2.5743 0.2262 13 7 2.5908 -3.2976 0.9888 14 6 2.0653 -3.1299 -1.3777 15 1 2.5036 -2.5300 -2.1615 16 6 1.7167 -4.4406 -1.6257 17 7 1.1835 -5.1712 -0.6710 18 14 2.0034 -5.1791 -3.3174 19 1 3.3562 -5.7895 -3.3683 20 1 0.9797 -6.2217 -3.5823 21 1 1.9022 -4.1134 -4.3465 22 1 -0.3634 -0.1048 1.0222 23 1 -0.3633 0.9377 -0.4204 24 1 -0.3633 -0.8330 -0.6019 25 1 4.7701 2.4947 0.0117 26 1 6.8879 -1.0864 -0.0072 27 1 4.8422 -2.3827 -0.0117 28 1 2.2205 -4.2311 1.0873 29 1 3.5732 -3.3206 0.7600 30 1 0.9386 -6.0935 -0.8454 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260940024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:21 Heat of formation + Delta-G solvation = 72.019661 kcal Electronic energy + Delta-G solvation = -16113.218569 eV Core-core repulsion = 13522.658983 eV Total energy + Delta-G solvation = -2590.559586 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.00478 -39.48502 -36.93046 -35.16033 -33.56556 -32.36808 -30.58746 -28.90698 -27.98007 -25.38121 -24.38695 -22.89526 -21.45306 -18.99330 -18.62511 -18.34909 -17.13375 -16.94211 -16.48993 -16.15170 -15.54569 -14.89458 -14.51714 -14.31793 -14.21134 -13.64806 -13.50476 -13.31344 -13.05422 -12.88639 -12.86991 -12.31508 -12.08912 -12.01115 -11.20575 -10.97397 -10.78202 -9.70416 -9.41894 -8.88736 -8.21495 -6.49333 -0.39253 0.30782 1.31658 1.36501 1.44687 1.58293 1.83387 2.30769 2.61305 2.95369 3.08286 3.34174 3.46136 3.85032 4.14355 4.22240 4.32657 4.48873 4.66491 4.81365 4.83301 4.91645 5.04587 5.33899 5.43507 5.53468 5.66234 5.88830 5.96878 6.47915 6.64091 6.72823 6.83272 6.93256 7.26844 8.71759 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.026364 B = 0.009496 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.793506 B = 2947.830650 C = 3442.056339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.022 3.978 3 N -0.482 5.482 4 C 0.118 3.882 5 C 0.191 3.809 6 N -0.471 5.471 7 C 0.027 3.973 8 C 0.014 3.986 9 N -0.344 5.344 10 C 0.000 4.000 11 C 0.285 3.715 12 H 0.045 0.955 13 N -0.843 5.843 14 C -0.564 4.564 15 H 0.035 0.965 16 C 0.036 3.964 17 N -0.905 5.905 18 Si 0.955 3.045 19 H -0.272 1.272 20 H -0.277 1.277 21 H -0.280 1.280 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.070 0.930 25 H 0.215 0.785 26 H 0.211 0.789 27 H 0.171 0.829 28 H 0.353 0.647 29 H 0.314 0.686 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 5.998 0.906 8.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 N -0.206 5.206 4 C -0.126 4.126 5 C 0.008 3.992 6 N -0.182 5.182 7 C -0.111 4.111 8 C -0.110 4.110 9 N -0.017 5.017 10 C -0.119 4.119 11 C 0.174 3.826 12 H 0.063 0.937 13 N -0.374 5.374 14 C -0.604 4.604 15 H 0.054 0.946 16 C -0.166 4.166 17 N -0.544 5.544 18 Si 0.781 3.219 19 H -0.197 1.197 20 H -0.202 1.202 21 H -0.206 1.206 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.088 0.912 25 H 0.231 0.769 26 H 0.228 0.772 27 H 0.188 0.812 28 H 0.168 0.832 29 H 0.125 0.875 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.709 7.356 1.488 9.430 hybrid contribution -0.382 -2.644 -1.714 3.174 sum 5.327 4.713 -0.225 7.116 Atomic orbital electron populations 1.20128 0.85196 1.03403 1.03168 1.21250 0.98173 0.87122 1.04560 1.70290 0.98595 1.29784 1.21926 1.22525 0.96651 0.81737 1.11644 1.23157 0.81706 1.01772 0.92547 1.68203 1.27448 1.09455 1.13136 1.22613 0.98048 0.89414 1.01013 1.22969 0.83050 1.01355 1.03676 1.42591 1.06325 1.08951 1.43848 1.21901 0.81108 0.99090 1.09783 1.17306 0.93857 0.81798 0.89673 0.93671 1.59528 1.05800 1.22532 1.49534 1.21794 1.43496 0.97141 0.97945 0.94640 1.25581 0.93578 0.97127 1.00349 1.69797 1.41488 1.09308 1.33758 0.85601 0.78298 0.77940 0.80058 1.19727 1.20249 1.20565 0.90015 0.89601 0.91153 0.76859 0.77219 0.81187 0.83167 0.87525 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.12 9.87 71.23 0.70 -1.42 16 2 C 0.02 0.94 7.06 41.68 0.29 1.23 16 3 N -0.48 -19.59 11.30 -182.22 -2.06 -21.65 16 4 C 0.12 4.49 7.85 134.08 1.05 5.54 16 5 C 0.19 5.68 11.34 85.45 0.97 6.65 16 6 N -0.47 -13.60 10.42 -195.45 -2.04 -15.63 16 7 C 0.03 0.74 11.07 83.69 0.93 1.67 16 8 C 0.01 0.47 10.34 83.19 0.86 1.33 16 9 N -0.34 -13.89 2.95 -338.95 -1.00 -14.89 16 10 C 0.00 -0.02 5.85 41.27 0.24 0.22 16 11 C 0.28 13.74 3.00 43.43 0.13 13.87 16 12 H 0.05 2.37 7.24 -2.38 -0.02 2.35 16 13 N -0.84 -38.28 9.13 -174.95 -1.60 -39.88 16 14 C -0.56 -29.07 8.68 25.60 0.22 -28.85 16 15 H 0.04 1.92 7.74 -2.91 -0.02 1.90 16 16 C 0.04 1.81 5.39 84.65 0.46 2.27 16 17 N -0.91 -46.56 11.58 21.45 0.25 -46.31 16 18 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 22 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 23 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.07 2.53 7.66 -2.39 -0.02 2.51 16 25 H 0.21 4.61 8.06 -2.91 -0.02 4.59 16 26 H 0.21 3.96 8.06 -2.91 -0.02 3.94 16 27 H 0.17 5.58 6.07 -2.91 -0.02 5.57 16 28 H 0.35 16.94 7.18 -89.69 -0.64 16.29 16 29 H 0.31 13.29 6.17 -89.70 -0.55 12.74 16 30 H 0.27 13.32 8.31 -92.70 -0.77 12.54 16 Total: -1.00 -59.82 259.47 1.43 -58.39 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.01 Total: 34.59 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.86 Total: 2.51 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -6.45 Total: -138.37 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -59.82 1.43 -58.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260940024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.413 kcal (2) G-P(sol) polarization free energy of solvation -59.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds