Wall clock time and date at job start Mon Mar 30 2020 03:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31096 * 125.30088 * 2 1 4 4 C 1.33310 * 109.90920 * 180.14061 * 3 2 1 5 5 C 1.50703 * 126.29006 * 179.82203 * 4 3 2 6 6 H 1.09002 * 109.47152 * 194.68824 * 5 4 3 7 7 N 1.46899 * 109.47107 * 314.68737 * 5 4 3 8 8 C 1.50699 * 109.47227 * 74.68940 * 5 4 3 9 9 H 1.07999 * 120.00019 * 359.97438 * 8 5 4 10 10 C 1.37877 * 120.00129 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99969 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 119.99840 * 359.97438 * 10 8 5 13 13 H 1.48497 * 109.47167 * 89.99961 * 12 10 8 14 14 H 1.48500 * 109.47028 * 210.00109 * 12 10 8 15 15 H 1.48497 * 109.47377 * 330.00144 * 12 10 8 16 16 C 1.37868 * 107.41820 * 359.55761 * 4 3 2 17 17 C 1.40649 * 134.65393 * 180.26259 * 16 4 3 18 18 N 1.31194 * 119.54763 * 180.02562 * 17 16 4 19 19 C 1.33880 * 121.44812 * 359.97438 * 18 17 16 20 20 C 1.34630 * 121.57474 * 0.02562 * 19 18 17 21 21 N 1.34347 * 125.29829 * 179.64259 * 2 1 3 22 22 H 1.08999 * 109.47396 * 270.35730 * 1 2 3 23 23 H 1.08993 * 109.47173 * 30.35901 * 1 2 3 24 24 H 1.09003 * 109.46975 * 150.35671 * 1 2 3 25 25 H 1.00903 * 110.99833 * 59.99796 * 7 5 4 26 26 H 1.00901 * 111.00152 * 183.95033 * 7 5 4 27 27 H 0.96999 * 119.99716 * 179.97438 * 11 10 8 28 28 H 1.08003 * 120.23140 * 0.02562 * 17 16 4 29 29 H 1.08000 * 119.21450 * 179.97438 * 19 18 17 30 30 H 1.08007 * 120.16996 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2646 1.0699 0.0000 4 6 3.5499 0.7161 -0.0031 5 6 4.7322 1.6505 -0.0079 6 1 5.6329 1.0954 -0.2701 7 7 4.5097 2.7167 -0.9936 8 6 4.8976 2.2585 1.3611 9 1 4.2146 1.9950 2.1551 10 6 5.9203 3.1519 1.5996 11 7 6.0649 3.6821 2.7944 12 14 7.1012 3.6082 0.2261 13 1 6.5755 4.7876 -0.5072 14 1 8.4293 3.9361 0.8038 15 1 7.2376 2.4637 -0.7101 16 6 3.5986 -0.6617 0.0050 17 6 4.6335 -1.6142 0.0112 18 7 4.3366 -2.8921 0.0180 19 6 3.0661 -3.3140 0.0198 20 6 2.0356 -2.4476 0.0141 21 7 2.2833 -1.0965 0.0068 22 1 -0.3634 0.0064 1.0276 23 1 -0.3633 0.8867 -0.5194 24 1 -0.3633 -0.8932 -0.5083 25 1 3.6798 3.2462 -0.7724 26 1 5.3158 3.3198 -1.0622 27 1 6.7846 4.3104 2.9623 28 1 5.6656 -1.2958 0.0103 29 1 2.8629 -4.3747 0.0250 30 1 1.0192 -2.8130 0.0153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260977907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:26 Heat of formation + Delta-G solvation = 103.409135 kcal Electronic energy + Delta-G solvation = -15895.757598 eV Core-core repulsion = 13306.559161 eV Total energy + Delta-G solvation = -2589.198436 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.60114 -38.13124 -35.35939 -33.27108 -31.76419 -31.43397 -29.99220 -27.31232 -25.82465 -24.15999 -23.10503 -21.29324 -19.74092 -17.46012 -17.18291 -16.79238 -15.90675 -15.57448 -15.00932 -14.68017 -14.18249 -13.55845 -13.31556 -13.09860 -12.56328 -12.53415 -12.26997 -12.08291 -11.65928 -11.18134 -10.85453 -10.47595 -10.24772 -9.94431 -9.58671 -9.40807 -9.04135 -8.75452 -7.63430 -7.08291 -6.20311 -4.23611 0.88368 1.55182 2.78685 3.16948 3.28994 3.30404 3.46777 3.84877 4.24947 4.46907 4.58272 4.68036 4.79196 5.03176 5.15408 5.46339 5.47788 5.55308 5.66488 5.74276 5.88044 6.07152 6.16395 6.62286 6.74705 7.04438 7.41632 7.46971 8.01498 8.08274 8.32687 8.44147 8.54364 8.87453 9.37135 10.92459 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.008521 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.445688 B = 3285.183981 C = 3714.534090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.175 3.825 3 N -0.441 5.441 4 C 0.143 3.857 5 C 0.250 3.750 6 H 0.056 0.944 7 N -0.845 5.845 8 C -0.539 4.539 9 H 0.075 0.925 10 C 0.074 3.926 11 N -0.889 5.889 12 Si 0.872 3.128 13 H -0.274 1.274 14 H -0.290 1.290 15 H -0.258 1.258 16 C -0.099 4.099 17 C 0.229 3.771 18 N -0.513 5.513 19 C 0.042 3.958 20 C -0.016 4.016 21 N -0.362 5.362 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.342 0.658 26 H 0.317 0.683 27 H 0.266 0.734 28 H 0.181 0.819 29 H 0.165 0.835 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -10.290 -6.439 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 N -0.157 5.157 4 C -0.001 4.001 5 C 0.140 3.860 6 H 0.073 0.927 7 N -0.379 5.379 8 C -0.580 4.580 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.526 5.526 12 Si 0.701 3.299 13 H -0.200 1.200 14 H -0.217 1.217 15 H -0.182 1.182 16 C -0.205 4.205 17 C 0.047 3.953 18 N -0.224 5.224 19 C -0.095 4.095 20 C -0.137 4.137 21 N -0.036 5.036 22 H 0.097 0.903 23 H 0.111 0.889 24 H 0.087 0.913 25 H 0.154 0.846 26 H 0.133 0.867 27 H 0.077 0.923 28 H 0.197 0.803 29 H 0.182 0.818 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.785 -10.831 -6.854 14.996 hybrid contribution 0.286 0.706 0.400 0.860 sum -7.500 -10.125 -6.454 14.157 Atomic orbital electron populations 1.20112 0.84716 1.03684 1.03326 1.23294 0.95744 0.79707 1.09439 1.70020 1.02404 1.26384 1.16882 1.21372 0.92784 0.88844 0.97056 1.17895 0.88305 0.88499 0.91324 0.92660 1.59546 1.07826 1.17519 1.53052 1.21515 1.14826 1.25782 0.95853 0.90710 1.24992 0.96815 0.95546 0.95646 1.69889 1.32039 1.29754 1.20931 0.87021 0.80796 0.79818 0.82295 1.20034 1.21680 1.18229 1.20336 0.84804 0.96436 1.18964 1.22959 0.98715 0.86227 0.87428 1.68287 1.20393 1.16636 1.17071 1.21991 0.87386 0.99928 1.00217 1.22319 1.01998 0.81178 1.08220 1.42667 1.08138 1.05733 1.47074 0.90349 0.88930 0.91346 0.84588 0.86695 0.92347 0.80259 0.81750 0.82067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.36 36.01 0.37 -0.34 16 2 C 0.18 3.09 7.97 -155.55 -1.24 1.85 16 3 N -0.44 -9.49 11.09 -6.56 -0.07 -9.57 16 4 C 0.14 3.21 5.96 -82.08 -0.49 2.72 16 5 C 0.25 6.00 2.73 -70.02 -0.19 5.81 16 6 H 0.06 1.29 7.19 -51.93 -0.37 0.92 16 7 N -0.85 -19.31 9.14 -6.65 -0.06 -19.37 16 8 C -0.54 -15.04 9.29 -34.44 -0.32 -15.36 16 9 H 0.07 2.35 7.98 -52.49 -0.42 1.93 16 10 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 11 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 12 Si 0.87 20.57 24.61 -169.99 -4.18 16.38 16 13 H -0.27 -6.25 7.01 56.52 0.40 -5.85 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 16 C -0.10 -1.96 6.77 -84.06 -0.57 -2.52 16 17 C 0.23 4.02 11.34 -16.91 -0.19 3.83 16 18 N -0.51 -8.36 10.44 -13.19 -0.14 -8.50 16 19 C 0.04 0.56 11.05 -17.94 -0.20 0.36 16 20 C -0.02 -0.21 10.95 -16.35 -0.18 -0.39 16 21 N -0.36 -6.26 2.96 -58.21 -0.17 -6.44 16 22 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.34 7.81 8.89 -39.29 -0.35 7.46 16 26 H 0.32 7.17 4.29 -39.29 -0.17 7.01 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.18 2.80 8.06 -52.48 -0.42 2.38 16 29 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 260.00 15.07 3.92 3.92 Total: -1.00 -32.95 260.00 -6.06 -39.01 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -3.02 Total: 12.48 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.10 Total: -2.07 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: 0.33 Total: -69.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.18 Total: 16.38 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.95 -6.06 -39.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.421 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds