Wall clock time and date at job start Mon Mar 30 2020 03:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31096 * 125.30088 * 2 1 4 4 C 1.33310 * 109.90920 * 180.14061 * 3 2 1 5 5 C 1.50703 * 126.29006 * 179.82203 * 4 3 2 6 6 H 1.09002 * 109.47152 * 194.68824 * 5 4 3 7 7 N 1.46899 * 109.47107 * 314.68737 * 5 4 3 8 8 C 1.50699 * 109.47227 * 74.68940 * 5 4 3 9 9 H 1.07999 * 120.00019 * 359.97438 * 8 5 4 10 10 C 1.37877 * 120.00129 * 180.02562 * 8 5 4 11 11 N 1.31513 * 119.99969 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 119.99840 * 359.97438 * 10 8 5 13 13 H 1.48497 * 109.47167 * 89.99961 * 12 10 8 14 14 H 1.48500 * 109.47028 * 210.00109 * 12 10 8 15 15 H 1.48497 * 109.47377 * 330.00144 * 12 10 8 16 16 C 1.37868 * 107.41820 * 359.55761 * 4 3 2 17 17 C 1.40649 * 134.65393 * 180.26259 * 16 4 3 18 18 N 1.31194 * 119.54763 * 180.02562 * 17 16 4 19 19 C 1.33880 * 121.44812 * 359.97438 * 18 17 16 20 20 C 1.34630 * 121.57474 * 0.02562 * 19 18 17 21 21 N 1.34347 * 125.29829 * 179.64259 * 2 1 3 22 22 H 1.08999 * 109.47396 * 270.35730 * 1 2 3 23 23 H 1.08993 * 109.47173 * 30.35901 * 1 2 3 24 24 H 1.09003 * 109.46975 * 150.35671 * 1 2 3 25 25 H 1.00903 * 110.99833 * 59.99796 * 7 5 4 26 26 H 1.00901 * 111.00152 * 183.95033 * 7 5 4 27 27 H 0.96999 * 119.99716 * 179.97438 * 11 10 8 28 28 H 1.08003 * 120.23140 * 0.02562 * 17 16 4 29 29 H 1.08000 * 119.21450 * 179.97438 * 19 18 17 30 30 H 1.08007 * 120.16996 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2646 1.0699 0.0000 4 6 3.5499 0.7161 -0.0031 5 6 4.7322 1.6505 -0.0079 6 1 5.6329 1.0954 -0.2701 7 7 4.5097 2.7167 -0.9936 8 6 4.8976 2.2585 1.3611 9 1 4.2146 1.9950 2.1551 10 6 5.9203 3.1519 1.5996 11 7 6.0649 3.6821 2.7944 12 14 7.1012 3.6082 0.2261 13 1 6.5755 4.7876 -0.5072 14 1 8.4293 3.9361 0.8038 15 1 7.2376 2.4637 -0.7101 16 6 3.5986 -0.6617 0.0050 17 6 4.6335 -1.6142 0.0112 18 7 4.3366 -2.8921 0.0180 19 6 3.0661 -3.3140 0.0198 20 6 2.0356 -2.4476 0.0141 21 7 2.2833 -1.0965 0.0068 22 1 -0.3634 0.0064 1.0276 23 1 -0.3633 0.8867 -0.5194 24 1 -0.3633 -0.8932 -0.5083 25 1 3.6798 3.2462 -0.7724 26 1 5.3158 3.3198 -1.0622 27 1 6.7846 4.3104 2.9623 28 1 5.6656 -1.2958 0.0103 29 1 2.8629 -4.3747 0.0250 30 1 1.0192 -2.8130 0.0153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260977907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:25 Heat of formation + Delta-G solvation = 77.778546 kcal Electronic energy + Delta-G solvation = -15896.869023 eV Core-core repulsion = 13306.559161 eV Total energy + Delta-G solvation = -2590.309862 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.94813 -39.41466 -37.11861 -34.82836 -33.68092 -32.75379 -31.18108 -28.84271 -27.56460 -25.50208 -24.74447 -22.61491 -21.30687 -19.18529 -18.71339 -18.17953 -17.47806 -17.08063 -16.46185 -16.02227 -15.88636 -15.04885 -14.68215 -14.38680 -14.33486 -13.66701 -13.64865 -13.26837 -13.19127 -12.91778 -12.79949 -12.12175 -11.90338 -11.65815 -11.32277 -10.90151 -10.74591 -10.38830 -9.48932 -8.46791 -8.36179 -6.46818 -0.34884 0.23348 1.29005 1.35522 1.45825 1.54377 2.05928 2.23920 2.54344 2.94693 3.34812 3.40547 3.51382 3.64683 3.83797 4.07873 4.30567 4.37819 4.56246 4.60781 4.68688 4.80713 4.95952 5.10213 5.34612 5.40637 5.52001 6.03578 6.18261 6.38816 6.54964 6.68119 6.77797 6.99531 7.18258 8.79053 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.031227 B = 0.008521 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.445688 B = 3285.183981 C = 3714.534090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.170 3.830 3 N -0.480 5.480 4 C 0.089 3.911 5 C 0.258 3.742 6 H 0.060 0.940 7 N -0.834 5.834 8 C -0.541 4.541 9 H 0.019 0.981 10 C 0.017 3.983 11 N -0.940 5.940 12 Si 0.941 3.059 13 H -0.257 1.257 14 H -0.288 1.288 15 H -0.238 1.238 16 C -0.103 4.103 17 C 0.200 3.800 18 N -0.508 5.508 19 C 0.027 3.973 20 C -0.004 4.004 21 N -0.364 5.364 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.340 0.660 26 H 0.318 0.682 27 H 0.270 0.730 28 H 0.186 0.814 29 H 0.211 0.789 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -12.483 -8.211 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 N -0.196 5.196 4 C -0.054 4.054 5 C 0.148 3.852 6 H 0.077 0.923 7 N -0.367 5.367 8 C -0.582 4.582 9 H 0.038 0.962 10 C -0.182 4.182 11 N -0.579 5.579 12 Si 0.765 3.235 13 H -0.183 1.183 14 H -0.215 1.215 15 H -0.161 1.161 16 C -0.212 4.212 17 C 0.017 3.983 18 N -0.218 5.218 19 C -0.109 4.109 20 C -0.124 4.124 21 N -0.037 5.037 22 H 0.109 0.891 23 H 0.114 0.886 24 H 0.125 0.875 25 H 0.152 0.848 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.203 0.797 29 H 0.228 0.772 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.947 -13.034 -8.640 18.016 hybrid contribution 0.479 1.185 1.031 1.642 sum -8.468 -11.849 -7.609 16.432 Atomic orbital electron populations 1.20359 0.80651 1.05752 1.04691 1.24235 0.97643 0.78921 1.07972 1.69873 1.02610 1.28967 1.18159 1.21064 0.92834 0.89910 1.01541 1.17646 0.89875 0.88853 0.88873 0.92264 1.59531 1.07707 1.17286 1.52199 1.21656 1.13670 1.26155 0.96684 0.96235 1.25916 0.98709 0.95225 0.98360 1.70052 1.33293 1.30958 1.23576 0.85904 0.77861 0.80575 0.79132 1.18263 1.21472 1.16133 1.20435 0.86688 0.95917 1.18109 1.23062 0.98779 0.86516 0.89909 1.68295 1.22543 1.15730 1.15223 1.22801 0.86215 1.02195 0.99678 1.23274 1.04727 0.79103 1.05291 1.42935 1.07068 1.07333 1.46344 0.89127 0.88635 0.87528 0.84838 0.86620 0.92129 0.79729 0.77218 0.76759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.36 71.24 0.74 -0.42 16 2 C 0.17 5.77 7.97 138.17 1.10 6.87 16 3 N -0.48 -21.05 11.09 -174.66 -1.94 -22.99 16 4 C 0.09 4.09 5.96 42.25 0.25 4.34 16 5 C 0.26 12.73 2.73 43.42 0.12 12.85 16 6 H 0.06 2.82 7.19 -2.39 -0.02 2.80 16 7 N -0.83 -38.27 9.14 -174.95 -1.60 -39.87 16 8 C -0.54 -31.73 9.29 25.60 0.24 -31.49 16 9 H 0.02 1.31 7.98 -2.91 -0.02 1.29 16 10 C 0.02 0.98 5.47 84.65 0.46 1.44 16 11 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 12 Si 0.94 42.87 24.61 68.60 1.69 44.56 16 13 H -0.26 -11.00 7.01 99.48 0.70 -10.30 16 14 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 16 C -0.10 -4.08 6.77 38.58 0.26 -3.82 16 17 C 0.20 6.97 11.34 85.38 0.97 7.94 16 18 N -0.51 -15.45 10.44 -195.64 -2.04 -17.49 16 19 C 0.03 0.62 11.05 83.55 0.92 1.54 16 20 C 0.00 -0.08 10.95 83.00 0.91 0.83 16 21 N -0.36 -11.84 2.96 -338.09 -1.00 -12.84 16 22 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.34 15.85 8.89 -89.69 -0.80 15.06 16 26 H 0.32 14.09 4.29 -89.69 -0.39 13.71 16 27 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.19 5.90 8.06 -2.91 -0.02 5.88 16 29 H 0.21 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.22 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -76.54 260.00 1.31 -75.23 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.07 Total: 31.67 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.97 Total: 0.07 kcal Atomic # 7 Polarization: -145.24 SS G_CDS: -6.28 Total: -151.52 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.69 Total: 44.56 kcal Total: -76.54 1.31 -75.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260977907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.004 kcal (2) G-P(sol) polarization free energy of solvation -76.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds