Wall clock time and date at job start Mon Mar 30 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47245 * 270.00071 * 3 2 1 5 5 H 1.48507 * 109.46650 * 30.00199 * 3 2 1 6 6 H 1.48501 * 109.47334 * 149.99526 * 3 2 1 7 7 C 1.37882 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99749 * 185.17986 * 7 2 1 9 9 C 1.50697 * 119.99871 * 5.18526 * 7 2 1 10 10 H 1.09008 * 109.47297 * 354.91844 * 9 7 2 11 11 N 1.46904 * 109.47134 * 234.92447 * 9 7 2 12 12 C 1.46902 * 111.00252 * 154.99639 * 11 9 7 13 13 C 1.50699 * 109.46991 * 179.97438 * 12 11 9 14 14 C 1.38678 * 120.42006 * 270.25174 * 13 12 11 15 15 C 1.38619 * 118.41871 * 180.24234 * 14 13 12 16 16 C 1.38223 * 119.16511 * 359.75708 * 15 14 13 17 17 N 1.31856 * 120.76212 * 359.97438 * 16 15 14 18 18 C 1.31880 * 121.72536 * 359.97438 * 17 16 15 19 19 C 1.52999 * 109.47433 * 114.92557 * 9 7 2 20 20 C 1.52998 * 117.49682 * 3.39728 * 19 9 7 21 21 C 1.53004 * 117.49618 * 294.74304 * 19 9 7 22 22 H 0.96996 * 120.00432 * 0.02562 * 1 2 3 23 23 H 1.00906 * 110.99632 * 31.04637 * 11 9 7 24 24 H 1.09001 * 109.46832 * 60.00143 * 12 11 9 25 25 H 1.08996 * 109.47423 * 300.00443 * 12 11 9 26 26 H 1.08005 * 120.78723 * 359.97438 * 14 13 12 27 27 H 1.08001 * 120.41813 * 179.73116 * 15 14 13 28 28 H 1.07999 * 119.62067 * 180.02562 * 16 15 14 29 29 H 1.07998 * 119.61961 * 179.97438 * 18 17 16 30 30 H 1.09000 * 115.55027 * 149.07627 * 19 9 7 31 31 H 1.09001 * 117.49649 * 0.02562 * 20 19 9 32 32 H 1.09004 * 117.49397 * 145.02075 * 20 19 9 33 33 H 1.08996 * 117.49779 * 214.98347 * 21 19 9 34 34 H 1.09007 * 117.49640 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1959 0.0850 9 6 1.2557 -2.4965 -0.1168 10 1 0.1833 -2.3018 -0.1010 11 7 1.6115 -3.3692 1.0101 12 6 0.5414 -4.3376 1.2844 13 6 0.9417 -5.2136 2.4434 14 6 1.6381 -6.3928 2.2246 15 6 1.9811 -7.1695 3.3203 16 6 1.6245 -6.7435 4.5860 17 7 0.9669 -5.6134 4.7569 18 6 0.6252 -4.8490 3.7381 19 6 1.6300 -3.1834 -1.4317 20 6 2.6944 -2.5117 -2.3015 21 6 1.2259 -2.4867 -2.7327 22 1 -0.4850 0.8400 -0.0004 23 1 1.8281 -2.8269 1.8330 24 1 0.3761 -4.9559 0.4021 25 1 -0.3766 -3.8044 1.5315 26 1 1.9031 -6.7007 1.2238 27 1 2.5197 -8.0960 3.1867 28 1 1.8883 -7.3426 5.4449 29 1 0.0864 -3.9303 3.9172 30 1 1.6068 -4.2731 -1.4161 31 1 3.1284 -1.5807 -1.9368 32 1 3.3714 -3.1596 -2.8585 33 1 0.9373 -3.1180 -3.5730 34 1 0.6939 -1.5388 -2.6517 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:11 Heat of formation + Delta-G solvation = 39.414816 kcal Electronic energy + Delta-G solvation = -15697.506660 eV Core-core repulsion = 13209.073565 eV Total energy + Delta-G solvation = -2488.433095 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02241 -38.82055 -36.07275 -34.53191 -33.16919 -32.16475 -28.75581 -26.19384 -24.73290 -24.38652 -22.96087 -22.56999 -20.64670 -18.40853 -17.86491 -17.31774 -16.82335 -16.45803 -15.98382 -15.58200 -15.18844 -14.62809 -14.38282 -14.24098 -13.95681 -13.83549 -13.14592 -12.93547 -12.84045 -12.44524 -12.25659 -11.97685 -11.77066 -11.29091 -10.87737 -10.71691 -10.62347 -10.35182 -10.32697 -9.90522 -8.94504 -8.16678 -6.25771 0.22621 0.41918 1.38737 1.41336 1.50001 2.39197 2.89031 3.11980 3.31360 3.58117 3.81146 3.95955 4.03568 4.17869 4.19467 4.38798 4.52904 4.56456 4.66262 4.76363 4.85376 4.93753 4.97445 5.01996 5.25136 5.34524 5.44857 5.52088 5.61191 5.68707 5.72497 5.84969 6.18277 6.52393 6.84779 7.03378 7.06969 7.43635 8.90015 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.027864 B = 0.006661 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.644475 B = 4202.359328 C = 4809.207310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.023 3.977 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.223 3.777 10 H 0.013 0.987 11 N -0.678 5.678 12 C 0.106 3.894 13 C -0.128 4.128 14 C -0.065 4.065 15 C -0.164 4.164 16 C 0.080 3.920 17 N -0.512 5.512 18 C 0.084 3.916 19 C -0.131 4.131 20 C -0.165 4.165 21 C -0.180 4.180 22 H 0.262 0.738 23 H 0.329 0.671 24 H 0.077 0.923 25 H 0.017 0.983 26 H 0.147 0.853 27 H 0.169 0.831 28 H 0.183 0.817 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -12.163 2.515 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.177 4.177 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.115 3.885 10 H 0.031 0.969 11 N -0.308 5.308 12 C -0.024 4.024 13 C -0.130 4.130 14 C -0.092 4.092 15 C -0.183 4.183 16 C -0.077 4.077 17 N -0.221 5.221 18 C -0.073 4.073 19 C -0.150 4.150 20 C -0.202 4.202 21 C -0.217 4.217 22 H 0.071 0.929 23 H 0.146 0.854 24 H 0.095 0.905 25 H 0.035 0.965 26 H 0.165 0.835 27 H 0.187 0.813 28 H 0.200 0.800 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.986 -12.207 2.966 12.912 hybrid contribution -0.397 1.647 -0.477 1.760 sum 2.589 -10.560 2.489 11.154 Atomic orbital electron populations 1.70021 1.07245 1.27379 1.51572 1.25663 0.95443 1.02273 0.94305 0.85723 0.78885 0.79817 0.78290 1.20070 1.21296 1.19242 1.21242 0.93256 0.90959 1.49462 0.92873 1.18782 0.94840 0.88549 0.86303 0.96882 1.60896 1.39992 1.20514 1.09433 1.20759 0.92708 0.93862 0.95082 1.20902 0.99721 0.96892 0.95528 1.21748 0.93755 0.92698 1.00951 1.22481 1.01084 1.02014 0.92766 1.23307 0.93709 0.92461 0.98252 1.67668 1.12536 1.06509 1.35363 1.22655 0.97708 0.98588 0.88330 1.22349 1.03767 0.96698 0.92230 1.22887 0.91192 1.02878 1.03232 1.22694 0.98852 1.01829 0.98363 0.92922 0.85396 0.90461 0.96486 0.83536 0.81338 0.80003 0.83846 0.89153 0.89782 0.88691 0.88180 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.45 12.62 21.45 0.27 -52.18 16 2 C 0.02 1.23 5.45 84.66 0.46 1.70 16 3 Si 0.95 42.91 29.54 68.60 2.03 44.94 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.51 -26.72 6.12 25.60 0.16 -26.57 16 8 H 0.05 2.83 7.42 -2.91 -0.02 2.81 16 9 C 0.22 10.74 2.70 44.17 0.12 10.86 16 10 H 0.01 0.74 6.58 -2.38 -0.02 0.72 16 11 N -0.68 -28.67 6.29 -499.45 -3.14 -31.81 16 12 C 0.11 3.82 5.63 85.56 0.48 4.31 16 13 C -0.13 -4.01 5.41 -19.77 -0.11 -4.12 16 14 C -0.07 -1.67 9.86 22.47 0.22 -1.45 16 15 C -0.16 -3.42 10.11 22.36 0.23 -3.19 16 16 C 0.08 1.86 11.18 84.69 0.95 2.80 16 17 N -0.51 -15.55 10.36 -195.85 -2.03 -17.58 16 18 C 0.08 2.69 10.86 84.67 0.92 3.61 16 19 C -0.13 -5.57 5.82 -10.79 -0.06 -5.63 16 20 C -0.17 -6.61 9.68 30.62 0.30 -6.31 16 21 C -0.18 -7.31 10.12 30.62 0.31 -7.00 16 22 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 23 H 0.33 14.74 8.34 -89.69 -0.75 13.99 16 24 H 0.08 2.65 7.65 -2.39 -0.02 2.63 16 25 H 0.02 0.67 8.01 -2.39 -0.02 0.65 16 26 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 27 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 28 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 30 H 0.09 3.49 7.79 -2.39 -0.02 3.47 16 31 H 0.08 3.76 6.20 -2.39 -0.01 3.74 16 32 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 33 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.06 2.93 8.14 -2.38 -0.02 2.91 16 Total: -1.00 -60.11 290.04 1.44 -58.67 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.34 Total: 28.96 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 3.97 Total: -31.00 kcal Atomic # 7 Polarization: -96.67 SS G_CDS: -4.90 Total: -101.57 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -60.11 1.44 -58.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.083 kcal (2) G-P(sol) polarization free energy of solvation -60.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds