Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30099 * 124.95998 * 2 1 4 4 C 1.35673 * 109.50098 * 180.02562 * 3 2 1 5 5 C 1.39833 * 133.87622 * 180.02562 * 4 3 2 6 6 C 1.38178 * 118.15563 * 179.74554 * 5 4 3 7 7 C 1.50696 * 120.21987 * 180.23066 * 6 5 4 8 8 H 1.09001 * 109.47595 * 340.00104 * 7 6 5 9 9 N 1.46902 * 109.46919 * 220.00680 * 7 6 5 10 10 C 1.50694 * 109.47195 * 100.00232 * 7 6 5 11 11 H 1.07998 * 120.00281 * 0.02562 * 10 7 6 12 12 C 1.37877 * 119.99924 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00204 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00005 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47136 * 90.00101 * 14 12 10 16 16 H 1.48495 * 109.47324 * 210.00535 * 14 12 10 17 17 H 1.48504 * 109.46857 * 330.00499 * 14 12 10 18 18 C 1.38619 * 119.55678 * 0.25776 * 6 5 4 19 19 N 1.31687 * 121.35733 * 359.97438 * 18 6 5 20 20 C 1.32353 * 121.57654 * 359.97438 * 19 18 6 21 21 N 1.36125 * 124.95448 * 180.61443 * 2 1 3 22 22 H 0.96994 * 126.27946 * 359.39558 * 21 2 1 23 23 H 1.09003 * 109.47010 * 89.97288 * 1 2 3 24 24 H 1.08998 * 109.46984 * 209.96948 * 1 2 3 25 25 H 1.09000 * 109.47126 * 329.97411 * 1 2 3 26 26 H 1.08002 * 120.92543 * 0.02775 * 5 4 3 27 27 H 1.00903 * 110.99853 * 299.99422 * 9 7 6 28 28 H 1.00898 * 111.00443 * 63.94947 * 9 7 6 29 29 H 0.97005 * 119.99845 * 179.97438 * 13 12 10 30 30 H 1.07992 * 119.32145 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0662 0.0000 4 6 3.5601 0.7046 -0.0006 5 6 4.7629 1.4178 -0.0004 6 6 5.9451 0.7024 0.0042 7 6 7.2681 1.4238 0.0099 8 1 7.1264 2.4457 -0.3418 9 7 8.2095 0.7270 -0.8769 10 6 7.8216 1.4472 1.4113 11 1 7.2706 0.9854 2.2173 12 6 9.0319 2.0571 1.6645 13 7 9.7031 2.6190 0.6830 14 14 9.7183 2.0855 3.4016 15 1 10.5608 0.8824 3.6207 16 1 10.5415 3.3071 3.5887 17 1 8.5980 2.0894 4.3765 18 6 5.9058 -0.6832 0.0031 19 7 4.7624 -1.3364 -0.0019 20 6 3.6013 -0.7010 -0.0054 21 7 2.2869 -1.1156 -0.0120 22 1 1.9749 -2.0340 -0.0136 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.7678 2.4978 0.0008 27 1 8.3579 -0.2232 -0.5717 28 1 7.8920 0.7539 -1.8342 29 1 10.5545 3.0484 0.8612 30 1 6.8320 -1.2385 0.0071 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261268689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = 81.738656 kcal Electronic energy + Delta-G solvation = -15481.850631 eV Core-core repulsion = 12891.712492 eV Total energy + Delta-G solvation = -2590.138139 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.00166 -38.30758 -34.72287 -33.12425 -31.72111 -31.23472 -30.03802 -27.37527 -25.96964 -23.18058 -22.59202 -21.06174 -20.19464 -18.01617 -16.85916 -16.28966 -15.71059 -15.56255 -14.64043 -14.03407 -13.91645 -13.43699 -13.36894 -12.92602 -12.58196 -12.44802 -12.05994 -11.74749 -11.37631 -10.87925 -10.83495 -10.62945 -10.58525 -9.95011 -9.30271 -8.79690 -8.44355 -8.17703 -7.92986 -7.13490 -5.89528 -4.05112 1.18805 1.85047 2.74921 2.98629 3.34441 3.41369 3.44966 4.15625 4.31171 4.51015 4.68645 4.92343 5.23638 5.29050 5.30748 5.38904 5.64039 5.66019 5.71617 6.17856 6.23230 6.30947 6.63030 6.78803 7.16241 7.34316 7.42688 7.88530 7.98623 8.13861 8.31020 8.57851 8.95436 9.10648 9.64106 11.14606 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.042839 B = 0.006162 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.451625 B = 4542.789656 C = 4706.241501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.277 3.723 3 N -0.486 5.486 4 C 0.005 3.995 5 C -0.031 4.031 6 C -0.131 4.131 7 C 0.263 3.737 8 H 0.052 0.948 9 N -0.808 5.808 10 C -0.534 4.534 11 H 0.053 0.947 12 C 0.086 3.914 13 N -0.845 5.845 14 Si 0.885 3.115 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.142 3.858 19 N -0.493 5.493 20 C 0.218 3.782 21 N -0.592 5.592 22 H 0.420 0.580 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.137 0.863 27 H 0.318 0.682 28 H 0.300 0.700 29 H 0.257 0.743 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 -6.505 -2.464 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.009 3.991 3 N -0.208 5.208 4 C -0.115 4.115 5 C -0.059 4.059 6 C -0.138 4.138 7 C 0.153 3.847 8 H 0.069 0.931 9 N -0.334 5.334 10 C -0.572 4.572 11 H 0.072 0.928 12 C -0.121 4.121 13 N -0.479 5.479 14 Si 0.713 3.287 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.024 4.024 19 N -0.206 5.206 20 C -0.016 4.016 21 N -0.209 5.209 22 H 0.259 0.741 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.155 0.845 27 H 0.130 0.870 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.086 -5.849 -2.308 15.425 hybrid contribution -0.238 -1.110 0.851 1.419 sum -14.323 -6.959 -1.457 15.991 Atomic orbital electron populations 1.20326 0.84114 1.04562 1.04048 1.23512 0.95450 0.80823 0.99304 1.70332 1.01044 1.27527 1.21886 1.19728 0.92468 0.91932 1.07328 1.20693 0.88074 1.00455 0.96725 1.22571 0.99565 0.95202 0.96454 1.18137 0.80202 0.92555 0.93854 0.93062 1.59197 1.51518 1.19829 1.02870 1.20803 1.05690 1.39179 0.91551 0.92828 1.24925 0.96574 0.94472 0.96172 1.70098 1.13515 1.33893 1.30417 0.86737 0.79084 0.77485 0.85430 1.20647 1.21238 1.20059 1.22442 0.93413 0.92035 0.94541 1.66394 0.96005 1.41246 1.16940 1.18901 0.85894 0.91347 1.05498 1.42546 1.03943 1.09810 1.64585 0.74109 0.89516 0.90321 0.88531 0.84480 0.86958 0.88952 0.93347 0.82102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.51 36.00 0.38 -0.17 16 2 C 0.28 3.75 8.08 -154.75 -1.25 2.50 16 3 N -0.49 -8.65 11.28 -8.19 -0.09 -8.74 16 4 C 0.00 0.09 7.24 -84.67 -0.61 -0.52 16 5 C -0.03 -0.64 9.85 -39.01 -0.38 -1.02 16 6 C -0.13 -2.76 4.89 -104.51 -0.51 -3.27 16 7 C 0.26 6.28 2.86 -70.02 -0.20 6.08 16 8 H 0.05 1.34 8.03 -51.93 -0.42 0.92 16 9 N -0.81 -18.06 8.37 -6.65 -0.06 -18.12 16 10 C -0.53 -14.28 8.71 -34.44 -0.30 -14.58 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 12 C 0.09 2.34 5.39 -17.82 -0.10 2.25 16 13 N -0.84 -24.03 12.77 55.43 0.71 -23.32 16 14 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.14 2.78 10.44 -17.47 -0.18 2.60 16 19 N -0.49 -9.50 10.38 -12.27 -0.13 -9.62 16 20 C 0.22 4.04 8.46 -155.63 -1.32 2.72 16 21 N -0.59 -8.24 6.22 -9.47 -0.06 -8.30 16 22 H 0.42 4.26 8.96 -40.82 -0.37 3.89 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.14 2.70 8.06 -52.49 -0.42 2.28 16 27 H 0.32 6.64 7.34 -39.29 -0.29 6.35 16 28 H 0.30 6.00 9.06 -39.29 -0.36 5.64 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.16 2.91 6.65 -52.49 -0.35 2.56 16 LS Contribution 264.87 15.07 3.99 3.99 Total: -1.00 -32.39 264.87 -8.14 -40.53 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -3.01 Total: 10.91 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -4.48 Total: -3.41 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: 0.37 Total: -68.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.39 -8.14 -40.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.269 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds