Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30099 * 124.95998 * 2 1 4 4 C 1.35673 * 109.50098 * 180.02562 * 3 2 1 5 5 C 1.39833 * 133.87622 * 180.02562 * 4 3 2 6 6 C 1.38178 * 118.15563 * 179.74554 * 5 4 3 7 7 C 1.50696 * 120.21987 * 180.23066 * 6 5 4 8 8 H 1.09001 * 109.47595 * 340.00104 * 7 6 5 9 9 N 1.46902 * 109.46919 * 220.00680 * 7 6 5 10 10 C 1.50694 * 109.47195 * 100.00232 * 7 6 5 11 11 H 1.07998 * 120.00281 * 0.02562 * 10 7 6 12 12 C 1.37877 * 119.99924 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00204 * 0.02562 * 12 10 7 14 14 Si 1.86805 * 120.00005 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47136 * 90.00101 * 14 12 10 16 16 H 1.48495 * 109.47324 * 210.00535 * 14 12 10 17 17 H 1.48504 * 109.46857 * 330.00499 * 14 12 10 18 18 C 1.38619 * 119.55678 * 0.25776 * 6 5 4 19 19 N 1.31687 * 121.35733 * 359.97438 * 18 6 5 20 20 C 1.32353 * 121.57654 * 359.97438 * 19 18 6 21 21 N 1.36125 * 124.95448 * 180.61443 * 2 1 3 22 22 H 0.96994 * 126.27946 * 359.39558 * 21 2 1 23 23 H 1.09003 * 109.47010 * 89.97288 * 1 2 3 24 24 H 1.08998 * 109.46984 * 209.96948 * 1 2 3 25 25 H 1.09000 * 109.47126 * 329.97411 * 1 2 3 26 26 H 1.08002 * 120.92543 * 0.02775 * 5 4 3 27 27 H 1.00903 * 110.99853 * 299.99422 * 9 7 6 28 28 H 1.00898 * 111.00443 * 63.94947 * 9 7 6 29 29 H 0.97005 * 119.99845 * 179.97438 * 13 12 10 30 30 H 1.07992 * 119.32145 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0662 0.0000 4 6 3.5601 0.7046 -0.0006 5 6 4.7629 1.4178 -0.0004 6 6 5.9451 0.7024 0.0042 7 6 7.2681 1.4238 0.0099 8 1 7.1264 2.4457 -0.3418 9 7 8.2095 0.7270 -0.8769 10 6 7.8216 1.4472 1.4113 11 1 7.2706 0.9854 2.2173 12 6 9.0319 2.0571 1.6645 13 7 9.7031 2.6190 0.6830 14 14 9.7183 2.0855 3.4016 15 1 10.5608 0.8824 3.6207 16 1 10.5415 3.3071 3.5887 17 1 8.5980 2.0894 4.3765 18 6 5.9058 -0.6832 0.0031 19 7 4.7624 -1.3364 -0.0019 20 6 3.6013 -0.7010 -0.0054 21 7 2.2869 -1.1156 -0.0120 22 1 1.9749 -2.0340 -0.0136 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.7678 2.4978 0.0008 27 1 8.3579 -0.2232 -0.5717 28 1 7.8920 0.7539 -1.8342 29 1 10.5545 3.0484 0.8612 30 1 6.8320 -1.2385 0.0071 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261268689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = 57.925458 kcal Electronic energy + Delta-G solvation = -15482.883249 eV Core-core repulsion = 12891.712492 eV Total energy + Delta-G solvation = -2591.170757 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.32514 -39.79055 -36.48431 -34.54957 -33.60507 -32.33342 -31.51184 -28.68715 -27.91474 -24.89189 -23.99325 -22.45446 -21.66824 -19.37768 -18.62067 -17.89818 -17.24922 -16.83222 -16.53573 -15.81478 -15.50830 -14.53103 -14.48911 -14.27067 -14.17444 -13.81246 -13.27591 -13.27169 -12.94137 -12.71972 -12.57943 -12.18228 -12.09424 -11.78958 -11.23916 -10.54935 -10.28600 -9.66081 -9.40889 -8.89348 -7.97164 -6.18752 -0.20735 0.30434 1.45314 1.46878 1.55133 1.56046 1.72640 2.47659 2.82111 3.04229 3.26789 3.42915 3.72884 4.08020 4.09558 4.20520 4.46994 4.51740 4.68019 4.74071 4.91274 5.02156 5.15251 5.20049 5.56672 5.65149 5.76758 6.15835 6.24046 6.64243 6.72274 6.86397 7.10621 7.26425 7.53751 9.06157 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.042839 B = 0.006162 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.451625 B = 4542.789656 C = 4706.241501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.305 3.695 3 N -0.529 5.529 4 C -0.009 4.009 5 C -0.048 4.048 6 C -0.140 4.140 7 C 0.272 3.728 8 H 0.019 0.981 9 N -0.816 5.816 10 C -0.544 4.544 11 H 0.043 0.957 12 C 0.041 3.959 13 N -0.876 5.876 14 Si 0.946 3.054 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.276 1.276 18 C 0.134 3.866 19 N -0.490 5.490 20 C 0.205 3.795 21 N -0.577 5.577 22 H 0.441 0.559 23 H 0.111 0.889 24 H 0.114 0.886 25 H 0.103 0.897 26 H 0.131 0.869 27 H 0.327 0.673 28 H 0.314 0.686 29 H 0.257 0.743 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 -7.998 -2.040 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.038 3.962 3 N -0.252 5.252 4 C -0.129 4.129 5 C -0.076 4.076 6 C -0.147 4.147 7 C 0.161 3.839 8 H 0.037 0.963 9 N -0.344 5.344 10 C -0.583 4.583 11 H 0.061 0.939 12 C -0.164 4.164 13 N -0.511 5.511 14 Si 0.772 3.228 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.201 1.201 18 C -0.032 4.032 19 N -0.203 5.203 20 C -0.031 4.031 21 N -0.195 5.195 22 H 0.283 0.717 23 H 0.130 0.870 24 H 0.133 0.867 25 H 0.121 0.879 26 H 0.149 0.851 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.273 -7.381 -1.885 17.968 hybrid contribution 0.200 -0.670 0.679 0.975 sum -16.073 -8.051 -1.206 18.017 Atomic orbital electron populations 1.20700 0.79323 1.06656 1.06234 1.24764 0.97529 0.79495 0.94456 1.70376 1.00322 1.29552 1.24956 1.19867 0.93162 0.92637 1.07194 1.20707 0.88887 1.00383 0.97642 1.22186 0.98296 0.95812 0.98378 1.17732 0.81871 0.91564 0.92721 0.96334 1.58991 1.51539 1.20319 1.03531 1.21052 1.05743 1.38771 0.92728 0.93856 1.25600 0.96943 0.94240 0.99584 1.70210 1.13843 1.34859 1.32208 0.85775 0.78251 0.77610 0.81131 1.19997 1.20880 1.20139 1.22485 0.94200 0.91365 0.95132 1.66449 0.96169 1.40945 1.16739 1.19184 0.87212 0.91270 1.05431 1.42604 1.02057 1.11244 1.63623 0.71664 0.87024 0.86750 0.87871 0.85125 0.85992 0.87478 0.93412 0.81036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.51 71.24 0.75 0.01 16 2 C 0.31 7.33 8.08 137.90 1.11 8.44 16 3 N -0.53 -18.18 11.28 -179.82 -2.03 -20.20 16 4 C -0.01 -0.37 7.24 39.52 0.29 -0.09 16 5 C -0.05 -2.03 9.85 22.64 0.22 -1.80 16 6 C -0.14 -6.06 4.89 -19.79 -0.10 -6.15 16 7 C 0.27 13.45 2.86 43.42 0.12 13.57 16 8 H 0.02 1.03 8.03 -2.39 -0.02 1.01 16 9 N -0.82 -37.22 8.37 -174.96 -1.46 -38.68 16 10 C -0.54 -29.79 8.71 25.60 0.22 -29.56 16 11 H 0.04 2.41 7.74 -2.91 -0.02 2.38 16 12 C 0.04 2.24 5.39 84.65 0.46 2.70 16 13 N -0.88 -50.64 12.77 21.45 0.27 -50.37 16 14 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 C 0.13 5.28 10.44 84.81 0.89 6.17 16 19 N -0.49 -18.48 10.38 -192.74 -2.00 -20.48 16 20 C 0.21 7.33 8.46 133.84 1.13 8.47 16 21 N -0.58 -14.36 6.22 -183.87 -1.14 -15.50 16 22 H 0.44 7.24 8.96 -92.71 -0.83 6.41 16 23 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.13 5.50 8.06 -2.91 -0.02 5.48 16 27 H 0.33 13.78 7.34 -89.69 -0.66 13.12 16 28 H 0.31 12.78 9.06 -89.70 -0.81 11.97 16 29 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 30 H 0.17 6.21 6.65 -2.91 -0.02 6.19 16 Total: -1.00 -70.91 264.87 -0.34 -71.25 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -1.09 Total: 26.44 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 5.10 Total: 1.76 kcal Atomic # 7 Polarization: -138.87 SS G_CDS: -6.36 Total: -145.23 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -70.91 -0.34 -71.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.173 kcal (2) G-P(sol) polarization free energy of solvation -70.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds