Wall clock time and date at job start Mon Mar 30 2020 03:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99809 * 2 1 4 4 H 1.48505 * 109.46904 * 269.99876 * 3 2 1 5 5 H 1.48498 * 109.47360 * 30.00210 * 3 2 1 6 6 H 1.48498 * 109.47052 * 150.00488 * 3 2 1 7 7 C 1.37881 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99939 * 179.72239 * 7 2 1 9 9 C 1.50701 * 120.00078 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47209 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.90363 * 306.10271 * 10 9 7 12 12 N 1.47898 * 109.91685 * 67.40497 * 10 9 7 13 13 C 1.48542 * 105.81673 * 144.68310 * 12 10 9 14 14 C 1.54927 * 103.22966 * 320.79570 * 13 12 10 15 15 C 1.53992 * 109.91712 * 184.99910 * 10 9 7 16 16 H 1.09007 * 110.30559 * 120.40802 * 15 10 9 17 17 C 1.50701 * 110.30961 * 358.33877 * 15 10 9 18 18 C 1.38227 * 119.61588 * 276.79337 * 17 15 10 19 19 C 1.38619 * 119.16073 * 179.97438 * 18 17 15 20 20 C 1.38681 * 118.42204 * 359.97438 * 19 18 17 21 21 C 1.38179 * 119.15823 * 359.97438 * 20 19 18 22 22 N 1.31851 * 119.62045 * 96.51954 * 17 15 10 23 23 H 0.96991 * 119.99854 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47016 * 299.99983 * 9 7 2 25 25 H 1.08998 * 109.47001 * 60.00059 * 9 7 2 26 26 H 1.00900 * 111.00431 * 265.19908 * 12 10 9 27 27 H 1.09002 * 110.66733 * 202.35719 * 13 12 10 28 28 H 1.08997 * 110.80637 * 79.30167 * 13 12 10 29 29 H 1.09001 * 110.72402 * 279.05559 * 14 13 12 30 30 H 1.09001 * 110.72806 * 155.77185 * 14 13 12 31 31 H 1.08001 * 120.41808 * 359.97438 * 18 17 15 32 32 H 1.08001 * 120.79378 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.41665 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.61429 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0051 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9455 -3.5517 -0.8287 12 7 2.9788 -3.6979 1.2833 13 6 3.1962 -5.1359 1.5854 14 6 1.8665 -5.7962 1.1426 15 6 1.4899 -4.9981 -0.1267 16 1 1.8124 -5.5320 -1.0207 17 6 0.0031 -4.7562 -0.1707 18 6 -0.6973 -4.5912 1.0095 19 6 -2.0646 -4.3687 0.9580 20 6 -2.6790 -4.3196 -0.2842 21 6 -1.9133 -4.4924 -1.4214 22 7 -0.6137 -4.6989 -1.3346 23 1 -0.4849 0.8400 0.0004 24 1 0.6248 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8903 26 1 3.8572 -3.2065 1.2118 27 1 3.3628 -5.2840 2.6524 28 1 4.0326 -5.5306 1.0085 29 1 1.1032 -5.6799 1.9120 30 1 2.0189 -6.8491 0.9052 31 1 -0.1858 -4.6352 1.9597 32 1 -2.6378 -4.2366 1.8638 33 1 -3.7424 -4.1477 -0.3619 34 1 -2.3843 -4.4560 -2.3926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:45 Heat of formation + Delta-G solvation = 37.479814 kcal Electronic energy + Delta-G solvation = -16432.868202 eV Core-core repulsion = 13944.351199 eV Total energy + Delta-G solvation = -2488.517003 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07697 -37.71813 -32.94188 -32.15007 -31.69972 -30.13529 -28.30600 -26.12652 -23.22195 -22.91749 -22.16248 -20.46244 -18.79156 -16.76245 -16.33125 -15.78137 -15.42386 -14.86923 -14.47304 -14.20160 -13.50949 -13.22475 -12.81379 -12.30818 -12.20838 -11.80384 -11.50673 -11.29718 -11.16281 -10.95200 -10.72572 -10.49871 -10.38041 -10.11978 -9.43098 -9.23117 -8.90952 -8.84190 -8.26270 -8.20618 -7.68533 -5.87637 -3.87406 1.70457 1.87934 3.37505 3.43492 3.46728 4.34858 4.54512 4.69182 4.85499 5.11427 5.31396 5.38932 5.41701 5.48344 5.56579 5.59274 5.69834 5.84793 5.93348 6.11919 6.13466 6.25704 6.32316 6.41099 6.48552 6.72291 6.75311 6.99337 7.27153 7.47921 7.79877 7.87596 8.10548 8.21414 8.55255 8.59697 9.16727 9.73550 11.23456 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.010290 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.410671 B = 2720.303941 C = 3677.399688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.504 4.504 8 H 0.050 0.950 9 C 0.036 3.964 10 C 0.088 3.912 11 H 0.040 0.960 12 N -0.652 5.652 13 C 0.034 3.966 14 C -0.121 4.121 15 C -0.052 4.052 16 H 0.082 0.918 17 C 0.169 3.831 18 C -0.155 4.155 19 C -0.074 4.074 20 C -0.183 4.183 21 C 0.099 3.901 22 N -0.485 5.485 23 H 0.257 0.743 24 H 0.029 0.971 25 H 0.022 0.978 26 H 0.336 0.664 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -11.571 1.893 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.543 4.543 8 H 0.068 0.932 9 C -0.001 4.001 10 C -0.022 4.022 11 H 0.058 0.942 12 N -0.281 5.281 13 C -0.095 4.095 14 C -0.160 4.160 15 C -0.072 4.072 16 H 0.100 0.900 17 C 0.032 3.968 18 C -0.175 4.175 19 C -0.100 4.100 20 C -0.203 4.203 21 C -0.058 4.058 22 N -0.194 5.194 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.152 0.848 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.294 -11.439 1.564 11.618 hybrid contribution 0.592 1.104 0.061 1.255 sum -0.702 -10.335 1.626 10.486 Atomic orbital electron populations 1.69975 1.05906 1.26124 1.51471 1.24965 0.94776 0.98904 0.95793 0.86673 0.79910 0.84008 0.77831 1.20980 1.21408 1.19993 1.21150 0.92611 0.91101 1.49435 0.93214 1.19261 0.93240 0.90196 0.97394 1.22373 0.95970 0.94532 0.89330 0.94165 1.63066 1.23879 1.08433 1.32749 1.23012 0.95700 0.90570 1.00258 1.22718 0.98027 0.98006 0.97204 1.21080 0.89953 0.97726 0.98471 0.89998 1.20755 0.95250 0.92623 0.88213 1.21885 0.94504 1.01171 0.99916 1.21431 0.94778 0.95935 0.97861 1.21938 1.01002 1.03557 0.93843 1.22521 0.89528 0.95524 0.98225 1.67404 1.10527 1.13092 1.28346 0.93334 0.95304 0.95974 0.84831 0.90787 0.95079 0.90126 0.91605 0.84795 0.85568 0.85657 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.83 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.50 -14.52 8.91 -34.44 -0.31 -14.82 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.04 0.96 3.47 -27.88 -0.10 0.86 16 10 C 0.09 1.86 3.21 -66.65 -0.21 1.65 16 11 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 12 N -0.65 -12.43 6.94 -103.13 -0.72 -13.15 16 13 C 0.03 0.51 7.55 -1.90 -0.01 0.49 16 14 C -0.12 -1.80 6.46 -24.87 -0.16 -1.96 16 15 C -0.05 -0.96 3.37 -90.41 -0.31 -1.26 16 16 H 0.08 1.44 8.14 -51.92 -0.42 1.01 16 17 C 0.17 3.30 3.92 -82.59 -0.32 2.98 16 18 C -0.16 -2.84 7.48 -39.45 -0.29 -3.13 16 19 C -0.07 -1.23 10.18 -39.28 -0.40 -1.63 16 20 C -0.18 -2.95 10.11 -39.44 -0.40 -3.35 16 21 C 0.10 1.73 11.18 -17.55 -0.20 1.53 16 22 N -0.48 -9.71 9.84 -9.48 -0.09 -9.81 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.03 0.82 6.52 -51.93 -0.34 0.48 16 25 H 0.02 0.65 6.97 -51.93 -0.36 0.29 16 26 H 0.34 6.17 8.92 -39.29 -0.35 5.82 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.19 5.37 -51.93 -0.28 0.91 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 2.31 6.12 -52.49 -0.32 1.98 16 32 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 34 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 277.07 15.07 4.18 4.18 Total: -1.00 -32.67 277.07 -8.30 -40.97 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.57 Total: 4.45 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.81 Total: -17.09 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.07 Total: -49.78 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.67 -8.30 -40.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.448 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds