Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40282 * 126.75606 * 2 1 4 4 N 1.28644 * 109.42934 * 179.97438 * 3 2 1 5 5 C 1.34794 * 110.31784 * 0.02562 * 4 3 2 6 6 C 1.40132 * 133.16008 * 180.28802 * 5 4 3 7 7 C 1.36415 * 119.79903 * 180.16993 * 6 5 4 8 8 C 1.50702 * 119.62656 * 179.75696 * 7 6 5 9 9 H 1.08999 * 109.47159 * 19.75335 * 8 7 6 10 10 N 1.46894 * 109.47013 * 139.75360 * 8 7 6 11 11 C 1.50701 * 109.47093 * 259.75457 * 8 7 6 12 12 H 1.08000 * 120.00003 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99867 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00011 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99812 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47274 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47159 * 119.99817 * 15 13 11 18 18 H 1.48497 * 109.47246 * 239.99644 * 15 13 11 19 19 C 1.38912 * 120.75019 * 359.50801 * 7 6 5 20 20 C 1.36659 * 120.58112 * 0.24631 * 19 7 6 21 21 C 1.37460 * 126.75639 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47657 * 90.01937 * 1 2 3 23 23 H 1.08999 * 109.47237 * 210.02119 * 1 2 3 24 24 H 1.09004 * 109.46793 * 330.01645 * 1 2 3 25 25 H 1.07997 * 120.10266 * 359.96903 * 6 5 4 26 26 H 1.00900 * 111.00418 * 60.00250 * 10 8 7 27 27 H 1.00904 * 111.00045 * 183.95697 * 10 8 7 28 28 H 0.97004 * 120.00170 * 180.02562 * 14 13 11 29 29 H 1.08003 * 119.70528 * 180.27304 * 19 7 6 30 30 H 1.07995 * 120.09938 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3044 1.1239 0.0000 4 7 3.5325 0.7408 0.0005 5 6 3.6028 -0.6053 0.0004 6 6 4.6736 -1.5092 0.0059 7 6 4.4281 -2.8511 0.0005 8 6 5.5826 -3.8197 0.0009 9 1 6.4815 -3.3135 0.3529 10 7 5.2754 -4.9473 0.8908 11 6 5.8096 -4.3313 -1.3984 12 1 5.1804 -3.9896 -2.2069 13 6 6.8197 -5.2365 -1.6460 14 7 7.5855 -5.6529 -0.6613 15 14 7.1006 -5.8712 -3.3802 16 1 6.1117 -5.2532 -4.2998 17 1 8.4743 -5.5182 -3.8202 18 1 6.9387 -7.3472 -3.3994 19 6 3.1260 -3.3349 -0.0003 20 6 2.0645 -2.4742 -0.0006 21 6 2.2875 -1.1013 0.0005 22 1 -0.3634 -0.0003 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5136 25 1 5.6902 -1.1447 0.0111 26 1 4.4455 -5.4333 0.5854 27 1 6.0597 -5.5785 0.9586 28 1 8.2964 -6.2895 -0.8355 29 1 2.9510 -4.4006 -0.0001 30 1 1.0553 -2.8588 -0.0007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = 108.219777 kcal Electronic energy + Delta-G solvation = -15551.745185 eV Core-core repulsion = 12962.755353 eV Total energy + Delta-G solvation = -2588.989831 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.63848 -37.73420 -34.50478 -34.23322 -31.48492 -30.24333 -29.06913 -27.33477 -25.91576 -23.45482 -22.93060 -20.80723 -20.35855 -17.03348 -16.88165 -16.35027 -15.79166 -15.55206 -14.60810 -14.04897 -13.80520 -13.45019 -13.02701 -12.93160 -12.87569 -12.08353 -11.77932 -11.51430 -11.35944 -11.13467 -10.86797 -10.82634 -10.35413 -10.32135 -9.96915 -9.73289 -8.71712 -8.28239 -7.76150 -7.24643 -6.15006 -4.32130 0.91099 1.90802 2.36776 2.65573 3.18303 3.27834 3.32129 4.18239 4.34139 4.51082 4.54918 5.01124 5.04220 5.08705 5.24031 5.31718 5.56642 5.66516 5.87471 6.18695 6.31666 6.43865 6.57198 6.88728 6.89501 6.99445 7.28409 7.65234 7.69181 8.01096 8.38024 8.59583 8.85519 9.03360 9.40167 10.82605 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.040976 B = 0.006308 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.163634 B = 4437.720952 C = 4485.069680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.407 5.407 3 N -0.034 5.034 4 N -0.223 5.223 5 C -0.012 4.012 6 C -0.052 4.052 7 C -0.039 4.039 8 C 0.242 3.758 9 H 0.052 0.948 10 N -0.850 5.850 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.892 5.892 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.283 1.283 19 C -0.036 4.036 20 C -0.141 4.141 21 C 0.074 3.926 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.133 0.867 26 H 0.310 0.690 27 H 0.358 0.642 28 H 0.266 0.734 29 H 0.135 0.865 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 4.367 1.298 12.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.204 5.204 3 N -0.014 5.014 4 N -0.101 5.101 5 C -0.137 4.137 6 C -0.075 4.075 7 C -0.042 4.042 8 C 0.132 3.868 9 H 0.069 0.931 10 N -0.380 5.380 11 C -0.586 4.586 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.058 4.058 20 C -0.164 4.164 21 C -0.046 4.046 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.109 0.891 25 H 0.151 0.849 26 H 0.120 0.880 27 H 0.174 0.826 28 H 0.076 0.924 29 H 0.152 0.848 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.063 6.379 1.924 13.781 hybrid contribution 0.072 -1.988 -1.935 2.775 sum -11.991 4.391 -0.011 12.770 Atomic orbital electron populations 1.21823 0.73824 1.04517 1.03417 1.49927 1.07152 1.03854 1.59477 1.81492 0.94167 1.07905 1.17794 1.74462 1.11196 1.11461 1.13028 1.19790 0.93526 0.89591 1.10770 1.20054 0.97134 0.91074 0.99190 1.20086 0.96108 0.93718 0.94321 1.18005 0.89564 0.87976 0.91260 0.93063 1.59543 1.09491 1.15378 1.53587 1.21847 1.16392 1.25687 0.94656 0.92417 1.25009 0.95031 0.96065 0.97414 1.69743 1.19759 1.32319 1.31250 0.86461 0.78263 0.78486 0.84358 1.19738 1.20786 1.20926 1.20795 0.91517 0.99829 0.93686 1.19710 0.99889 0.88248 1.08516 1.19303 0.90818 0.90361 1.04107 0.90658 0.89454 0.89118 0.84911 0.88009 0.82572 0.92408 0.84757 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 11.54 59.84 0.69 1.66 16 2 N -0.41 -6.23 4.12 -65.49 -0.27 -6.50 16 3 N -0.03 -0.61 13.73 60.35 0.83 0.22 16 4 N -0.22 -4.39 12.36 32.07 0.40 -4.00 16 5 C -0.01 -0.24 7.26 -84.98 -0.62 -0.86 16 6 C -0.05 -1.04 9.65 -39.53 -0.38 -1.42 16 7 C -0.04 -0.79 4.86 -105.03 -0.51 -1.30 16 8 C 0.24 5.68 2.93 -70.02 -0.21 5.48 16 9 H 0.05 1.33 7.96 -51.93 -0.41 0.92 16 10 N -0.85 -18.88 9.01 -6.65 -0.06 -18.94 16 11 C -0.55 -13.97 8.70 -34.44 -0.30 -14.27 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.07 1.75 5.38 -17.82 -0.10 1.65 16 14 N -0.89 -23.66 11.54 55.43 0.64 -23.02 16 15 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.04 -0.64 9.21 -39.90 -0.37 -1.01 16 20 C -0.14 -2.20 10.01 -39.84 -0.40 -2.60 16 21 C 0.07 1.27 6.94 -84.15 -0.58 0.69 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.13 2.60 8.00 -52.49 -0.42 2.18 16 26 H 0.31 6.36 7.30 -39.29 -0.29 6.07 16 27 H 0.36 8.61 7.08 -39.29 -0.28 8.34 16 28 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.13 2.19 6.62 -52.48 -0.35 1.84 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 263.57 15.07 3.97 3.97 Total: -1.00 -28.97 263.57 -5.26 -34.23 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -2.98 Total: 10.71 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.77 Total: -11.98 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 1.53 Total: -52.23 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.97 -5.26 -34.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.453 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds