Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40282 * 126.75606 * 2 1 4 4 N 1.28644 * 109.42934 * 179.97438 * 3 2 1 5 5 C 1.34794 * 110.31784 * 0.02562 * 4 3 2 6 6 C 1.40132 * 133.16008 * 180.28802 * 5 4 3 7 7 C 1.36415 * 119.79903 * 180.16993 * 6 5 4 8 8 C 1.50702 * 119.62656 * 179.75696 * 7 6 5 9 9 H 1.08999 * 109.47159 * 19.75335 * 8 7 6 10 10 N 1.46894 * 109.47013 * 139.75360 * 8 7 6 11 11 C 1.50701 * 109.47093 * 259.75457 * 8 7 6 12 12 H 1.08000 * 120.00003 * 359.97438 * 11 8 7 13 13 C 1.37878 * 119.99867 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00011 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99812 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47274 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47159 * 119.99817 * 15 13 11 18 18 H 1.48497 * 109.47246 * 239.99644 * 15 13 11 19 19 C 1.38912 * 120.75019 * 359.50801 * 7 6 5 20 20 C 1.36659 * 120.58112 * 0.24631 * 19 7 6 21 21 C 1.37460 * 126.75639 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47657 * 90.01937 * 1 2 3 23 23 H 1.08999 * 109.47237 * 210.02119 * 1 2 3 24 24 H 1.09004 * 109.46793 * 330.01645 * 1 2 3 25 25 H 1.07997 * 120.10266 * 359.96903 * 6 5 4 26 26 H 1.00900 * 111.00418 * 60.00250 * 10 8 7 27 27 H 1.00904 * 111.00045 * 183.95697 * 10 8 7 28 28 H 0.97004 * 120.00170 * 180.02562 * 14 13 11 29 29 H 1.08003 * 119.70528 * 180.27304 * 19 7 6 30 30 H 1.07995 * 120.09938 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3044 1.1239 0.0000 4 7 3.5325 0.7408 0.0005 5 6 3.6028 -0.6053 0.0004 6 6 4.6736 -1.5092 0.0059 7 6 4.4281 -2.8511 0.0005 8 6 5.5826 -3.8197 0.0009 9 1 6.4815 -3.3135 0.3529 10 7 5.2754 -4.9473 0.8908 11 6 5.8096 -4.3313 -1.3984 12 1 5.1804 -3.9896 -2.2069 13 6 6.8197 -5.2365 -1.6460 14 7 7.5855 -5.6529 -0.6613 15 14 7.1006 -5.8712 -3.3802 16 1 6.1117 -5.2532 -4.2998 17 1 8.4743 -5.5182 -3.8202 18 1 6.9387 -7.3472 -3.3994 19 6 3.1260 -3.3349 -0.0003 20 6 2.0645 -2.4742 -0.0006 21 6 2.2875 -1.1013 0.0005 22 1 -0.3634 -0.0003 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5136 25 1 5.6902 -1.1447 0.0111 26 1 4.4455 -5.4333 0.5854 27 1 6.0597 -5.5785 0.9586 28 1 8.2964 -6.2895 -0.8355 29 1 2.9510 -4.4006 -0.0001 30 1 1.0553 -2.8588 -0.0007 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = 87.494557 kcal Electronic energy + Delta-G solvation = -15552.643898 eV Core-core repulsion = 12962.755353 eV Total energy + Delta-G solvation = -2589.888544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 232.102 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.99065 -39.22803 -36.13731 -35.56089 -33.32950 -31.61234 -30.55642 -28.43114 -27.76968 -24.97489 -24.43196 -22.09805 -21.92844 -18.69508 -18.26478 -17.94485 -17.19001 -17.00893 -16.38593 -15.55179 -15.05628 -14.85088 -14.51084 -14.30759 -13.85846 -13.59753 -13.44733 -13.11033 -12.82138 -12.78657 -12.56668 -12.53498 -11.90964 -11.81877 -11.47330 -11.43868 -10.68630 -9.68752 -9.26912 -9.01547 -8.09266 -6.35358 -0.45681 0.48302 1.25182 1.26657 1.38582 1.43156 1.52903 2.38273 2.80339 3.07259 3.17832 3.56503 3.69920 3.98737 4.29236 4.41004 4.41257 4.54251 4.66076 4.68566 4.77057 5.02252 5.10127 5.27621 5.43369 5.64835 5.68227 5.84884 5.96547 6.09935 6.67253 6.94761 7.01282 7.17768 7.41920 8.84683 Molecular weight = 232.10amu Principal moments of inertia in cm(-1) A = 0.040976 B = 0.006308 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.163634 B = 4437.720952 C = 4485.069680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.388 5.388 3 N -0.041 5.041 4 N -0.258 5.258 5 C -0.032 4.032 6 C -0.074 4.074 7 C -0.050 4.050 8 C 0.246 3.754 9 H 0.012 0.988 10 N -0.840 5.840 11 C -0.557 4.557 12 H 0.050 0.950 13 C 0.025 3.975 14 N -0.914 5.914 15 Si 0.956 3.044 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.275 1.275 19 C -0.050 4.050 20 C -0.111 4.111 21 C 0.069 3.931 22 H 0.097 0.903 23 H 0.117 0.883 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.323 0.677 27 H 0.347 0.653 28 H 0.268 0.732 29 H 0.150 0.850 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.098 3.885 0.765 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.186 5.186 3 N -0.020 5.020 4 N -0.135 5.135 5 C -0.157 4.157 6 C -0.097 4.097 7 C -0.054 4.054 8 C 0.136 3.864 9 H 0.030 0.970 10 N -0.370 5.370 11 C -0.596 4.596 12 H 0.068 0.932 13 C -0.175 4.175 14 N -0.554 5.554 15 Si 0.782 3.218 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.052 4.052 22 H 0.115 0.885 23 H 0.136 0.864 24 H 0.128 0.872 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.162 0.838 28 H 0.077 0.923 29 H 0.167 0.833 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.083 5.919 1.395 16.263 hybrid contribution 0.865 -1.757 -1.740 2.620 sum -14.218 4.162 -0.346 14.819 Atomic orbital electron populations 1.22458 0.69960 1.07046 1.05636 1.50388 1.09020 1.02391 1.56773 1.81382 0.94100 1.09036 1.17479 1.74453 1.12270 1.11782 1.15004 1.19908 0.94642 0.89786 1.11404 1.19943 0.97093 0.91516 1.01126 1.19861 0.96599 0.93038 0.95908 1.17770 0.89696 0.88623 0.90331 0.96952 1.59479 1.09433 1.14911 1.53170 1.22045 1.16430 1.25738 0.95410 0.93203 1.25685 0.94881 0.96359 1.00621 1.69840 1.20089 1.32720 1.32749 0.85536 0.77710 0.78160 0.80349 1.19739 1.21033 1.20069 1.20905 0.90649 1.00992 0.94630 1.20089 1.01509 0.86865 1.04815 1.19536 0.90195 0.91517 1.03960 0.88478 0.86441 0.87249 0.86384 0.86676 0.83834 0.92294 0.83285 0.80962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.54 127.77 1.47 2.66 16 2 N -0.39 -10.64 4.12 -361.10 -1.49 -12.12 16 3 N -0.04 -1.39 13.73 37.02 0.51 -0.89 16 4 N -0.26 -10.20 12.36 -52.44 -0.65 -10.84 16 5 C -0.03 -1.26 7.26 39.72 0.29 -0.97 16 6 C -0.07 -3.10 9.65 22.30 0.22 -2.88 16 7 C -0.05 -2.09 4.86 -20.13 -0.10 -2.19 16 8 C 0.25 11.92 2.93 43.43 0.13 12.05 16 9 H 0.01 0.69 7.96 -2.39 -0.02 0.67 16 10 N -0.84 -37.71 9.01 -174.96 -1.58 -39.28 16 11 C -0.56 -28.91 8.70 25.60 0.22 -28.69 16 12 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 13 C 0.03 1.30 5.38 84.66 0.46 1.76 16 14 N -0.91 -49.21 11.54 21.45 0.25 -48.96 16 15 Si 0.96 41.74 29.54 68.60 2.03 43.76 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 19 C -0.05 -1.66 9.21 22.06 0.20 -1.46 16 20 C -0.11 -3.03 10.01 22.10 0.22 -2.81 16 21 C 0.07 2.21 6.94 39.03 0.27 2.48 16 22 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 24 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.12 5.05 8.00 -2.91 -0.02 5.03 16 26 H 0.32 13.00 7.30 -89.69 -0.65 12.34 16 27 H 0.35 16.99 7.08 -89.69 -0.63 16.36 16 28 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.15 4.47 6.62 -2.91 -0.02 4.45 16 30 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -64.11 263.57 2.35 -61.77 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.10 Total: 26.63 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 3.38 Total: -20.06 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -2.96 Total: -112.10 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -64.11 2.35 -61.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.261 kcal (2) G-P(sol) polarization free energy of solvation -64.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds