Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47239 * 269.99810 * 3 2 1 5 5 H 1.48504 * 109.47161 * 29.99612 * 3 2 1 6 6 H 1.48502 * 109.47500 * 149.99651 * 3 2 1 7 7 C 1.38806 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64722 * 0.04149 * 9 7 2 11 11 C 1.54907 * 104.83458 * 204.09019 * 10 9 7 12 12 H 1.09004 * 111.00521 * 204.91220 * 11 10 9 13 13 N 1.46900 * 111.00218 * 81.06567 * 11 10 9 14 14 C 1.55151 * 101.58374 * 322.99156 * 11 10 9 15 15 H 1.08999 * 110.87140 * 277.06994 * 14 11 10 16 16 C 1.50702 * 110.71972 * 153.86303 * 14 11 10 17 17 C 1.38235 * 120.00098 * 292.29582 * 16 14 11 18 18 C 1.38229 * 119.99825 * 179.72772 * 17 16 14 19 19 C 1.38231 * 120.00249 * 0.27610 * 18 17 16 20 20 C 1.38239 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.38236 * 119.99857 * 359.97438 * 20 19 18 22 22 C 1.47022 * 125.65415 * 180.02562 * 9 7 2 23 23 H 0.96999 * 119.99496 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.36450 * 322.93406 * 10 9 7 25 25 H 1.09000 * 110.36531 * 85.13898 * 10 9 7 26 26 H 1.00905 * 111.00031 * 60.10881 * 13 11 10 27 27 H 1.00895 * 111.00009 * 184.05900 * 13 11 10 28 28 H 1.08004 * 119.99890 * 0.02562 * 17 16 14 29 29 H 1.08004 * 119.99867 * 180.25677 * 18 17 16 30 30 H 1.07998 * 120.00202 * 179.97438 * 19 18 17 31 31 H 1.07997 * 120.00453 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.00279 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.88140 * 59.55519 * 22 9 7 34 34 H 1.09003 * 110.00845 * 298.47187 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4022 -3.9322 0.6109 12 1 -1.3593 -4.3327 0.2766 13 7 -0.3368 -3.8860 2.0777 14 6 0.7783 -4.7524 0.0271 15 1 0.5489 -5.1004 -0.9800 16 6 1.1170 -5.9135 0.9262 17 6 1.6582 -5.6839 2.1774 18 6 1.9636 -6.7487 3.0042 19 6 1.7331 -8.0433 2.5778 20 6 1.1967 -8.2731 1.3247 21 6 0.8903 -7.2082 0.4981 22 6 1.9318 -3.7275 0.0016 23 1 -0.4849 0.8401 -0.0004 24 1 -0.5999 -1.7587 0.6141 25 1 -0.5265 -2.4849 -1.0195 26 1 -1.0278 -3.2523 2.4507 27 1 -0.4408 -4.8082 2.4736 28 1 1.8380 -4.6725 2.5107 29 1 2.3826 -6.5692 3.9834 30 1 1.9721 -8.8752 3.2237 31 1 1.0169 -9.2845 0.9913 32 1 0.4716 -7.3877 -0.4811 33 1 2.5571 -3.8506 0.8859 34 1 2.5311 -3.8663 -0.8982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379892919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = 58.283151 kcal Electronic energy + Delta-G solvation = -16301.113081 eV Core-core repulsion = 13813.498179 eV Total energy + Delta-G solvation = -2487.614902 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.47897 -37.16969 -33.38599 -31.60586 -30.80747 -30.58458 -27.71948 -26.48119 -24.36056 -22.25738 -21.73978 -19.87987 -19.06436 -16.94380 -16.47537 -15.40171 -15.07103 -14.65505 -14.54654 -14.02503 -13.64668 -13.15997 -12.88094 -12.44563 -12.20953 -11.88722 -11.57304 -11.10278 -10.97694 -10.90065 -10.73512 -10.51922 -10.27517 -10.06942 -9.72226 -9.47664 -8.62025 -8.58840 -8.33523 -7.90704 -6.70694 -5.57813 -2.96491 1.63131 1.70053 3.44991 3.49929 3.51890 4.06590 4.56584 5.03609 5.13234 5.23318 5.23661 5.40692 5.52047 5.59273 5.66840 5.74431 5.87287 5.98973 6.03569 6.22133 6.38292 6.43605 6.55596 6.71756 6.76853 6.85569 6.96353 7.11531 7.31155 7.39016 7.67402 7.85952 7.94279 8.09973 8.44868 9.30537 9.92262 10.58242 11.46854 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.047902 B = 0.006538 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.386672 B = 4281.339579 C = 4410.588320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.014 4.014 3 Si 0.913 3.087 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.212 4.212 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.161 3.839 11 C 0.071 3.929 12 H 0.029 0.971 13 N -0.825 5.825 14 C -0.061 4.061 15 H 0.076 0.924 16 C -0.061 4.061 17 C -0.090 4.090 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.130 4.130 21 C -0.125 4.125 22 C 0.152 3.848 23 H 0.250 0.750 24 H 0.110 0.890 25 H 0.013 0.987 26 H 0.338 0.662 27 H 0.326 0.674 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.031 0.969 34 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -13.674 3.646 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.209 4.209 3 Si 0.744 3.256 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.341 4.341 8 H 0.094 0.906 9 N -0.319 5.319 10 C 0.036 3.964 11 C -0.042 4.042 12 H 0.047 0.953 13 N -0.356 5.356 14 C -0.081 4.081 15 H 0.095 0.905 16 C -0.061 4.061 17 C -0.108 4.108 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.143 4.143 22 C 0.026 3.974 23 H 0.061 0.939 24 H 0.128 0.872 25 H 0.031 0.969 26 H 0.152 0.848 27 H 0.139 0.861 28 H 0.162 0.838 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.049 0.951 34 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 0.338 -13.150 3.531 13.620 hybrid contribution -0.542 0.326 -0.149 0.650 sum -0.204 -12.823 3.383 13.264 Atomic orbital electron populations 1.69769 1.04856 1.24495 1.58404 1.24727 0.95695 0.97541 1.02905 0.86080 0.78531 0.83526 0.77426 1.21835 1.21785 1.20786 1.19078 0.90457 0.82522 1.42035 0.90623 1.44295 1.01556 0.99630 1.86444 1.21945 0.85448 0.91621 0.97385 1.22797 0.93810 0.99361 0.88229 0.95279 1.58681 1.58122 1.13202 1.05601 1.21285 0.97584 0.92620 0.96585 0.90532 1.19859 0.97357 0.93651 0.95261 1.21440 0.96130 1.00094 0.93154 1.21190 1.00937 0.92758 0.99842 1.21045 1.00872 0.96800 0.96420 1.20994 1.00725 0.98384 0.94716 1.21072 1.01187 0.92383 0.99623 1.21284 0.93084 0.85241 0.97749 0.93946 0.87193 0.96919 0.84841 0.86095 0.83830 0.86567 0.86935 0.86849 0.86707 0.95097 0.96681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.14 10.09 55.49 0.56 -26.58 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.21 -6.03 10.27 -15.06 -0.15 -6.19 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.59 -15.45 3.39 -170.07 -0.58 -16.03 16 10 C 0.16 3.94 5.57 -2.53 -0.01 3.92 16 11 C 0.07 1.35 3.97 -65.57 -0.26 1.09 16 12 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 13 N -0.82 -14.50 7.57 -2.85 -0.02 -14.53 16 14 C -0.06 -1.12 3.13 -89.94 -0.28 -1.40 16 15 H 0.08 1.33 7.98 -51.93 -0.41 0.92 16 16 C -0.06 -0.97 4.48 -104.62 -0.47 -1.44 16 17 C -0.09 -1.42 6.52 -39.59 -0.26 -1.67 16 18 C -0.13 -1.73 10.05 -39.59 -0.40 -2.13 16 19 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 20 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 21 C -0.12 -1.74 9.68 -39.58 -0.38 -2.13 16 22 C 0.15 3.34 6.68 -3.06 -0.02 3.32 16 23 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.34 5.79 9.06 -39.29 -0.36 5.43 16 27 H 0.33 5.09 6.88 -39.29 -0.27 4.82 16 28 H 0.14 2.55 6.20 -52.48 -0.33 2.23 16 29 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.11 1.44 8.01 -52.49 -0.42 1.02 16 33 H 0.03 0.69 6.15 -51.93 -0.32 0.37 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -29.94 272.76 -8.58 -38.52 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.49 Total: 8.26 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -3.13 Total: -11.18 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.04 Total: -57.14 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.94 -8.58 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379892919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.800 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds