Wall clock time and date at job start Mon Mar 30 2020 03:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47239 * 269.99810 * 3 2 1 5 5 H 1.48504 * 109.47161 * 29.99612 * 3 2 1 6 6 H 1.48502 * 109.47500 * 149.99651 * 3 2 1 7 7 C 1.38806 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99978 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64722 * 0.04149 * 9 7 2 11 11 C 1.54907 * 104.83458 * 204.09019 * 10 9 7 12 12 H 1.09004 * 111.00521 * 204.91220 * 11 10 9 13 13 N 1.46900 * 111.00218 * 81.06567 * 11 10 9 14 14 C 1.55151 * 101.58374 * 322.99156 * 11 10 9 15 15 H 1.08999 * 110.87140 * 277.06994 * 14 11 10 16 16 C 1.50702 * 110.71972 * 153.86303 * 14 11 10 17 17 C 1.38235 * 120.00098 * 292.29582 * 16 14 11 18 18 C 1.38229 * 119.99825 * 179.72772 * 17 16 14 19 19 C 1.38231 * 120.00249 * 0.27610 * 18 17 16 20 20 C 1.38239 * 120.00094 * 359.97438 * 19 18 17 21 21 C 1.38236 * 119.99857 * 359.97438 * 20 19 18 22 22 C 1.47022 * 125.65415 * 180.02562 * 9 7 2 23 23 H 0.96999 * 119.99496 * 0.02562 * 1 2 3 24 24 H 1.09002 * 110.36450 * 322.93406 * 10 9 7 25 25 H 1.09000 * 110.36531 * 85.13898 * 10 9 7 26 26 H 1.00905 * 111.00031 * 60.10881 * 13 11 10 27 27 H 1.00895 * 111.00009 * 184.05900 * 13 11 10 28 28 H 1.08004 * 119.99890 * 0.02562 * 17 16 14 29 29 H 1.08004 * 119.99867 * 180.25677 * 18 17 16 30 30 H 1.07998 * 120.00202 * 179.97438 * 19 18 17 31 31 H 1.07997 * 120.00453 * 179.97438 * 20 19 18 32 32 H 1.08000 * 120.00279 * 179.97438 * 21 20 19 33 33 H 1.09001 * 109.88140 * 59.55519 * 22 9 7 34 34 H 1.09003 * 110.00845 * 298.47187 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4022 -3.9322 0.6109 12 1 -1.3593 -4.3327 0.2766 13 7 -0.3368 -3.8860 2.0777 14 6 0.7783 -4.7524 0.0271 15 1 0.5489 -5.1004 -0.9800 16 6 1.1170 -5.9135 0.9262 17 6 1.6582 -5.6839 2.1774 18 6 1.9636 -6.7487 3.0042 19 6 1.7331 -8.0433 2.5778 20 6 1.1967 -8.2731 1.3247 21 6 0.8903 -7.2082 0.4981 22 6 1.9318 -3.7275 0.0016 23 1 -0.4849 0.8401 -0.0004 24 1 -0.5999 -1.7587 0.6141 25 1 -0.5265 -2.4849 -1.0195 26 1 -1.0278 -3.2523 2.4507 27 1 -0.4408 -4.8082 2.4736 28 1 1.8380 -4.6725 2.5107 29 1 2.3826 -6.5692 3.9834 30 1 1.9721 -8.8752 3.2237 31 1 1.0169 -9.2845 0.9913 32 1 0.4716 -7.3877 -0.4811 33 1 2.5571 -3.8506 0.8859 34 1 2.5311 -3.8663 -0.8982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379892919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:37 Heat of formation + Delta-G solvation = 39.419653 kcal Electronic energy + Delta-G solvation = -16301.931064 eV Core-core repulsion = 13813.498179 eV Total energy + Delta-G solvation = -2488.432885 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76871 -38.65899 -35.24109 -33.16939 -32.44807 -31.65480 -29.40900 -28.17682 -26.23678 -23.43710 -22.99968 -21.70435 -20.51704 -18.93435 -17.66456 -16.86266 -16.66427 -16.46260 -15.86935 -15.35195 -15.25400 -14.62738 -14.06987 -13.91309 -13.77491 -13.47402 -13.31357 -12.94575 -12.68819 -12.44156 -12.34084 -12.00613 -11.95611 -11.78180 -11.60672 -11.17455 -10.73073 -9.67581 -9.53063 -9.28604 -8.79667 -7.73633 -5.15371 0.56374 0.64974 1.47097 1.49008 1.57735 2.52250 2.98630 3.35512 3.66594 3.71772 3.93984 4.01036 4.14661 4.25387 4.32253 4.46590 4.52169 4.71576 4.76798 4.81700 4.95095 5.04240 5.20785 5.30100 5.35810 5.42722 5.52148 5.70951 5.77652 5.82585 5.96354 6.25456 6.31543 6.47022 6.75106 7.15501 7.83296 8.48373 9.28460 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.047902 B = 0.006538 C = 0.006347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.386672 B = 4281.339579 C = 4410.588320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.613 5.613 10 C 0.164 3.836 11 C 0.085 3.915 12 H 0.048 0.952 13 N -0.827 5.827 14 C -0.048 4.048 15 H 0.085 0.915 16 C -0.078 4.078 17 C -0.104 4.104 18 C -0.132 4.132 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.127 4.127 22 C 0.149 3.851 23 H 0.246 0.754 24 H 0.080 0.920 25 H -0.013 1.013 26 H 0.340 0.660 27 H 0.341 0.659 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.027 0.973 34 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.035 -15.994 4.313 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.338 5.338 10 C 0.039 3.961 11 C -0.028 4.028 12 H 0.066 0.934 13 N -0.360 5.360 14 C -0.068 4.068 15 H 0.104 0.896 16 C -0.078 4.078 17 C -0.122 4.122 18 C -0.150 4.150 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.145 4.145 22 C 0.024 3.976 23 H 0.055 0.945 24 H 0.098 0.902 25 H 0.005 0.995 26 H 0.153 0.847 27 H 0.157 0.843 28 H 0.134 0.866 29 H 0.150 0.850 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.147 0.853 33 H 0.045 0.955 34 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 0.756 -15.507 4.206 16.085 hybrid contribution -0.632 0.968 -0.336 1.204 sum 0.124 -14.539 3.870 15.046 Atomic orbital electron populations 1.70023 1.06063 1.24783 1.59019 1.25547 0.96643 1.00673 1.02992 0.85062 0.77567 0.79260 0.77333 1.21474 1.21874 1.19745 1.19418 0.90829 0.83966 1.42045 0.90714 1.44559 1.02419 1.00525 1.86307 1.21726 0.84592 0.94094 0.95734 1.22512 0.95185 0.96133 0.88972 0.93387 1.58575 1.58421 1.14320 1.04707 1.21137 0.95288 0.92571 0.97771 0.89637 1.19632 0.99514 0.93570 0.95099 1.21229 0.97618 0.99552 0.93799 1.21387 1.00591 0.92791 1.00218 1.21433 0.99205 0.97029 0.96710 1.21369 0.99324 0.99357 0.94340 1.21256 1.00906 0.91757 1.00585 1.21404 0.94470 0.84638 0.97089 0.94473 0.90233 0.99550 0.84695 0.84347 0.86643 0.84976 0.83835 0.83785 0.85296 0.95545 0.97148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.38 10.09 21.65 0.22 -57.16 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.23 -13.63 10.27 84.03 0.86 -12.76 16 8 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.61 -32.91 3.39 -691.97 -2.35 -35.26 16 10 C 0.16 8.30 5.57 86.85 0.48 8.78 16 11 C 0.08 3.25 3.97 46.30 0.18 3.43 16 12 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 13 N -0.83 -29.04 7.57 -162.94 -1.23 -30.28 16 14 C -0.05 -1.75 3.13 -10.35 -0.03 -1.78 16 15 H 0.09 2.90 7.98 -2.39 -0.02 2.88 16 16 C -0.08 -2.36 4.48 -19.86 -0.09 -2.45 16 17 C -0.10 -3.14 6.52 22.27 0.15 -3.00 16 18 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 19 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 20 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 21 C -0.13 -3.16 9.68 22.27 0.22 -2.95 16 22 C 0.15 6.66 6.68 86.73 0.58 7.24 16 23 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 24 H 0.08 4.52 5.87 -2.39 -0.01 4.51 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.34 11.71 9.06 -89.69 -0.81 10.90 16 27 H 0.34 10.32 6.88 -89.70 -0.62 9.70 16 28 H 0.12 4.15 6.20 -2.91 -0.02 4.13 16 29 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 32 H 0.13 2.80 8.01 -2.91 -0.02 2.77 16 33 H 0.03 1.21 6.15 -2.39 -0.01 1.19 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -65.89 272.76 1.83 -64.06 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.32 Total: 24.21 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.49 Total: -14.55 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -3.36 Total: -122.70 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -65.89 1.83 -64.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379892919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.477 kcal (2) G-P(sol) polarization free energy of solvation -65.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds