Wall clock time and date at job start Mon Mar 30 2020 03:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48506 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47088 * 300.00023 * 3 2 1 6 6 H 1.48500 * 109.47145 * 60.00284 * 3 2 1 7 7 C 1.39863 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00092 * 197.96104 * 7 2 1 9 9 C 1.41132 * 120.00107 * 17.96433 * 7 2 1 10 10 C 1.40889 * 120.15632 * 204.59458 * 9 7 2 11 11 C 1.36339 * 119.83563 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.16197 * 0.02562 * 11 10 9 13 13 N 1.38857 * 119.84026 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00055 * 180.02562 * 13 12 11 15 15 C 1.52994 * 109.47512 * 179.97438 * 14 13 12 16 16 C 1.53941 * 113.73248 * 271.72454 * 15 14 13 17 17 N 1.47961 * 86.18083 * 221.92024 * 16 15 14 18 18 C 1.47965 * 90.76584 * 24.68792 * 17 16 15 19 19 C 1.39565 * 120.31485 * 0.24704 * 12 11 10 20 20 C 1.36339 * 120.16080 * 359.48657 * 19 12 11 21 21 H 0.97003 * 120.00283 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.08198 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.91755 * 179.97438 * 11 10 9 24 24 H 0.97001 * 119.99911 * 359.97438 * 13 12 11 25 25 H 1.09008 * 109.47083 * 299.99415 * 14 13 12 26 26 H 1.08997 * 109.47493 * 59.99070 * 14 13 12 27 27 H 1.08995 * 112.93893 * 43.42888 * 15 14 13 28 28 H 1.08992 * 113.75721 * 336.23938 * 16 15 14 29 29 H 1.09001 * 113.75424 * 107.60333 * 16 15 14 30 30 H 1.00894 * 111.00284 * 137.58385 * 17 16 15 31 31 H 1.08994 * 113.76095 * 220.99454 * 18 17 16 32 32 H 1.09002 * 113.85776 * 89.63953 * 18 17 16 33 33 H 1.08005 * 119.92162 * 179.72446 * 19 12 11 34 34 H 1.08003 * 120.08251 * 180.22563 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.7030 1.3465 0.0006 5 1 1.8842 2.3964 -1.2125 6 1 1.8842 2.3964 1.2125 7 6 2.0083 -1.2112 -0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3543 -2.4035 -0.3780 10 6 1.8268 -3.6473 0.0855 11 6 1.1903 -4.7950 -0.2837 12 6 0.0736 -4.7401 -1.1191 13 7 -0.5692 -5.9132 -1.4914 14 6 -1.7413 -5.8597 -2.3685 15 6 -2.2538 -7.2787 -2.6223 16 6 -1.5915 -7.9703 -3.8277 17 7 -2.9458 -8.4626 -4.1635 18 6 -3.5596 -7.3297 -3.4360 19 6 -0.3966 -3.5120 -1.5867 20 6 0.2266 -2.3558 -1.2213 21 1 -0.4851 0.8400 0.0004 22 1 2.6910 -3.6913 0.7316 23 1 1.5516 -5.7492 0.0705 24 1 -0.2417 -6.7683 -1.1712 25 1 -2.5248 -5.2698 -1.8925 26 1 -1.4649 -5.3985 -3.3167 27 1 -2.2747 -7.8905 -1.7205 28 1 -1.1820 -7.2763 -4.5616 29 1 -0.8931 -8.7602 -3.5515 30 1 -3.1204 -8.3929 -5.1548 31 1 -4.4335 -7.6078 -2.8470 32 1 -3.7266 -6.4475 -4.0540 33 1 -1.2586 -3.4772 -2.2364 34 1 -0.1405 -1.4059 -1.5809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710843058.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:30 Heat of formation + Delta-G solvation = 51.099553 kcal Electronic energy + Delta-G solvation = -15359.562382 eV Core-core repulsion = 12871.635975 eV Total energy + Delta-G solvation = -2487.926407 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62851 -37.79988 -34.91494 -32.95005 -29.81960 -29.44266 -27.73645 -26.12285 -24.63957 -23.35204 -21.09463 -19.95204 -19.56263 -17.19895 -16.73612 -15.92761 -15.57192 -14.97872 -14.58588 -14.08962 -13.73366 -13.19300 -12.74264 -12.67195 -12.54333 -12.06525 -11.74793 -11.46882 -11.24409 -11.06907 -10.94203 -10.70794 -10.62881 -10.42489 -9.68334 -9.28312 -9.22520 -9.11521 -8.51791 -7.48745 -6.63638 -6.37991 -4.02524 2.91012 3.10695 3.15835 3.21319 3.35637 3.93528 4.06091 4.11781 4.53085 4.77429 4.83039 5.18367 5.24426 5.38548 5.56545 5.63747 5.75075 5.83409 5.88154 6.06006 6.23342 6.28224 6.33106 6.93935 6.94532 7.02374 7.21098 7.36686 7.56213 7.69856 7.85076 8.16234 8.30047 8.50288 8.71611 8.81101 9.06983 9.16156 10.38126 Molecular weight = 232.13amu Principal moments of inertia in cm(-1) A = 0.055308 B = 0.004723 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.133431 B = 5926.757646 C = 6249.761978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.186 4.186 11 C -0.159 4.159 12 C 0.091 3.909 13 N -0.760 5.760 14 C 0.147 3.853 15 C -0.124 4.124 16 C 0.010 3.990 17 N -0.640 5.640 18 C 0.011 3.989 19 C -0.164 4.164 20 C -0.125 4.125 21 H 0.275 0.725 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.384 0.616 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.316 0.684 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.552 -8.965 -6.105 11.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.181 4.181 12 C -0.006 4.006 13 N -0.396 5.396 14 C 0.020 3.980 15 C -0.143 4.143 16 C -0.120 4.120 17 N -0.264 5.264 18 C -0.119 4.119 19 C -0.186 4.186 20 C -0.145 4.145 21 H 0.086 0.914 22 H 0.110 0.890 23 H 0.104 0.896 24 H 0.216 0.784 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.023 -9.413 -5.738 12.114 hybrid contribution 0.548 1.336 -0.396 1.497 sum -4.475 -8.077 -6.133 11.085 Atomic orbital electron populations 1.69863 1.07381 1.28493 1.37808 1.25790 0.94638 1.00884 0.92717 0.86374 0.81011 0.81610 0.78310 1.18622 1.19975 1.20278 1.19402 0.97948 0.91385 1.41096 0.90904 1.17500 0.92430 0.92004 0.90968 1.20549 1.02686 0.92618 1.04820 1.19812 0.97908 0.97068 1.03317 1.17360 0.95758 0.85682 1.01806 1.43824 1.32851 1.05822 1.57143 1.21020 0.88744 0.94150 0.94037 1.23219 0.95519 0.97064 0.98464 1.23786 0.92739 0.98540 0.96958 1.66895 1.05767 1.39679 1.14065 1.23690 0.97909 0.93389 0.96951 1.20082 1.01640 0.91962 1.04930 1.20931 0.98236 0.96409 0.98905 0.91397 0.89046 0.89592 0.78354 0.93194 0.93586 0.88132 0.91278 0.89587 0.87139 0.89390 0.91258 0.89529 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.59 10.97 55.54 0.61 -20.98 16 2 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.30 29.60 -169.99 -5.03 14.27 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.47 -12.79 9.03 -37.88 -0.34 -13.14 16 8 H 0.07 1.93 7.91 -52.48 -0.41 1.52 16 9 C 0.07 2.02 5.57 -106.79 -0.60 1.42 16 10 C -0.19 -4.67 9.74 -39.26 -0.38 -5.05 16 11 C -0.16 -3.60 9.82 -39.77 -0.39 -3.99 16 12 C 0.09 1.99 6.67 -83.69 -0.56 1.44 16 13 N -0.76 -13.17 5.70 -58.50 -0.33 -13.50 16 14 C 0.15 2.13 4.74 -4.05 -0.02 2.11 16 15 C -0.12 -1.42 3.94 -89.68 -0.35 -1.78 16 16 C 0.01 0.11 8.46 -2.76 -0.02 0.08 16 17 N -0.64 -6.64 8.53 -117.00 -1.00 -7.64 16 18 C 0.01 0.11 8.47 -2.76 -0.02 0.09 16 19 C -0.16 -3.88 9.23 -39.77 -0.37 -4.24 16 20 C -0.12 -3.30 8.64 -39.26 -0.34 -3.64 16 21 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 22 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 23 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 24 H 0.38 5.94 8.47 -40.82 -0.35 5.60 16 25 H 0.05 0.77 7.94 -51.92 -0.41 0.36 16 26 H 0.05 0.69 7.61 -51.93 -0.40 0.30 16 27 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.32 2.76 8.91 -39.30 -0.35 2.41 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.09 1.86 6.68 -52.48 -0.35 1.51 16 34 H 0.12 3.22 6.16 -52.48 -0.32 2.90 16 LS Contribution 284.06 15.07 4.28 4.28 Total: -1.00 -28.56 284.06 -9.63 -38.19 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -4.67 Total: 10.23 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -3.48 Total: -24.85 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.72 Total: -42.12 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.56 -9.63 -38.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710843058.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.288 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds