Wall clock time and date at job start Mon Mar 30 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.28009 * 120.00460 * 2 1 4 4 N 1.40105 * 119.99643 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00063 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47092 * 29.99883 * 5 4 3 7 7 C 1.53005 * 109.46847 * 270.00101 * 5 4 3 8 8 C 1.50699 * 109.47248 * 150.00049 * 5 4 3 9 9 H 1.07996 * 119.99833 * 0.02562 * 8 5 4 10 10 C 1.37872 * 120.00169 * 180.02562 * 8 5 4 11 11 N 1.31519 * 119.99885 * 359.97438 * 10 8 5 12 12 Si 1.86795 * 120.00336 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.47023 * 89.99820 * 12 10 8 14 14 H 1.48494 * 109.47521 * 209.99939 * 12 10 8 15 15 H 1.48497 * 109.47007 * 330.00121 * 12 10 8 16 16 C 1.50706 * 119.99754 * 180.02562 * 2 1 3 17 17 H 1.08998 * 115.55044 * 330.58226 * 16 2 1 18 18 C 1.53004 * 117.49707 * 184.91129 * 16 2 1 19 19 C 1.52994 * 117.49719 * 116.25456 * 16 2 1 20 20 F 1.39897 * 117.49980 * 214.97577 * 19 16 2 21 21 F 1.39903 * 117.50180 * 359.97438 * 19 16 2 22 22 H 1.08999 * 109.47280 * 89.99809 * 1 2 3 23 23 H 1.09005 * 109.47415 * 210.00099 * 1 2 3 24 24 H 1.08997 * 109.47027 * 329.99850 * 1 2 3 25 25 H 0.97004 * 119.99636 * 359.72479 * 4 3 2 26 26 H 1.09000 * 109.47258 * 60.00342 * 7 5 4 27 27 H 1.09005 * 109.46600 * 179.97438 * 7 5 4 28 28 H 1.08996 * 109.47096 * 299.99780 * 7 5 4 29 29 H 0.96998 * 119.99983 * 180.02562 * 11 10 8 30 30 H 1.09002 * 117.49781 * 0.02562 * 18 16 2 31 31 H 1.08998 * 117.49938 * 144.99529 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1471 1.1085 0.0000 4 7 1.4466 2.3219 0.0005 5 6 2.1791 3.5906 0.0011 6 1 3.1315 3.4605 -0.5127 7 6 2.4341 4.0316 1.4439 8 6 1.3647 4.6412 -0.7088 9 1 0.3979 4.3892 -1.1190 10 6 1.8537 5.9241 -0.8347 11 7 3.0308 6.2312 -0.3347 12 14 0.8446 7.2262 -1.7152 13 1 -0.0292 7.9213 -0.7361 14 1 1.7550 8.2111 -2.3526 15 1 0.0055 6.5815 -2.7570 16 6 2.2604 -1.3052 -0.0006 17 1 1.7536 -2.1408 0.4821 18 6 3.7847 -1.2410 0.1156 19 6 3.1335 -1.6163 -1.2178 20 9 3.2207 -2.9515 -1.6259 21 9 3.1709 -0.6676 -2.2454 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 0.4765 2.3219 -0.0031 26 1 3.0232 3.2717 1.9573 27 1 2.9795 4.9754 1.4443 28 1 1.4817 4.1617 1.9577 29 1 3.3747 7.1338 -0.4229 30 1 4.2424 -0.2548 0.1929 31 1 4.2807 -2.0343 0.6748 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841633526.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:13 Heat of formation + Delta-G solvation = -30.713781 kcal Electronic energy + Delta-G solvation = -16202.029350 eV Core-core repulsion = 13156.325721 eV Total energy + Delta-G solvation = -3045.703629 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 232.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.42123 -47.07888 -37.89335 -35.64254 -33.81454 -31.36952 -28.85459 -26.78274 -25.20736 -23.32803 -22.26664 -20.43895 -18.94384 -17.55869 -17.04600 -16.11474 -15.70752 -15.13029 -14.98759 -14.27989 -13.79152 -13.62088 -13.39762 -13.24927 -13.16270 -12.62351 -12.25940 -11.95897 -11.63029 -11.37392 -11.08270 -11.04126 -10.77199 -10.46675 -10.23193 -10.16551 -9.74252 -9.43735 -9.00010 -8.51605 -6.94061 -6.14090 -4.22098 2.49954 3.23937 3.26010 3.30623 3.33398 3.63835 3.80524 4.31147 4.35987 4.58815 4.84866 5.18406 5.25498 5.51660 5.54208 5.70931 5.80442 5.93087 6.05505 6.37007 6.73278 6.98302 6.99130 7.14964 7.57502 7.77704 7.85738 8.15814 8.30757 8.85617 9.33870 9.44819 10.91951 Molecular weight = 232.11amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.005722 C = 0.005666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.846803 B = 4891.950015 C = 4940.881041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.004 4.004 3 N -0.192 5.192 4 N -0.624 5.624 5 C 0.297 3.703 6 H 0.041 0.959 7 C -0.150 4.150 8 C -0.529 4.529 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.274 1.274 16 C -0.068 4.068 17 H 0.136 0.864 18 C -0.164 4.164 19 C 0.194 3.806 20 F -0.169 7.169 21 F -0.153 7.153 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.371 0.629 26 H 0.012 0.988 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.264 0.736 30 H 0.132 0.868 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -13.351 1.940 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.195 4.195 3 N -0.004 5.004 4 N -0.363 5.363 5 C 0.195 3.805 6 H 0.059 0.941 7 C -0.209 4.209 8 C -0.569 4.569 9 H 0.077 0.923 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.730 3.270 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.089 4.089 17 H 0.154 0.846 18 C -0.202 4.202 19 C 0.156 3.844 20 F -0.149 7.149 21 F -0.133 7.133 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.209 0.791 26 H 0.031 0.969 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.542 -12.598 1.913 12.754 hybrid contribution -1.708 0.469 -0.687 1.900 sum -2.250 -12.129 1.226 12.396 Atomic orbital electron populations 1.20935 0.93075 1.02537 1.02246 1.22679 0.92931 0.91208 1.12719 1.73278 1.29288 0.93468 1.04363 1.49007 1.06108 0.99957 1.81185 1.18525 0.92779 0.76367 0.92875 0.94104 1.22203 0.99151 1.01752 0.97782 1.21226 1.04505 0.94399 1.36753 0.92271 1.24854 0.95117 0.98240 0.95418 1.69890 1.17379 1.20300 1.44835 0.86427 0.79809 0.81056 0.79711 1.20535 1.21003 1.19885 1.21872 0.93219 0.96855 0.96991 0.84619 1.24347 0.95628 1.06110 0.94103 1.20206 1.10095 0.72621 0.81493 1.92988 1.96858 1.32888 1.92188 1.93063 1.96931 1.62255 1.61052 0.91566 0.91478 0.91783 0.79141 0.96912 0.89213 0.95589 0.92572 0.84959 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.51 36.00 0.34 -1.43 16 2 C 0.00 -0.06 6.51 -78.91 -0.51 -0.58 16 3 N -0.19 -3.83 10.46 35.60 0.37 -3.46 16 4 N -0.62 -13.77 5.93 -5.88 -0.03 -13.81 16 5 C 0.30 7.57 3.23 -69.08 -0.22 7.35 16 6 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 7 C -0.15 -3.66 9.29 37.16 0.35 -3.32 16 8 C -0.53 -14.29 8.74 -34.44 -0.30 -14.59 16 9 H 0.06 1.57 7.78 -52.49 -0.41 1.16 16 10 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 11 N -0.89 -24.75 11.32 55.43 0.63 -24.13 16 12 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 C -0.07 -0.89 6.10 -91.77 -0.56 -1.45 16 17 H 0.14 1.32 8.14 -51.93 -0.42 0.89 16 18 C -0.16 -2.04 10.00 -26.69 -0.27 -2.30 16 19 C 0.19 2.80 5.20 -26.70 -0.14 2.66 16 20 F -0.17 -2.32 17.60 2.25 0.04 -2.28 16 21 F -0.15 -2.74 17.13 2.25 0.04 -2.70 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 24 H 0.06 0.93 6.32 -51.93 -0.33 0.60 16 25 H 0.37 7.62 6.31 -182.59 -1.15 6.47 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.13 1.90 7.58 -51.93 -0.39 1.50 16 31 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 276.52 15.07 4.17 4.17 Total: -1.00 -28.83 276.52 -5.91 -34.74 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.69 Total: 3.58 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.41 Total: -11.94 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.96 Total: -41.40 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.08 Total: -4.98 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.83 -5.91 -34.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841633526.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.022 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds