Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48499 * 109.47063 * 273.77709 * 3 2 1 5 5 H 1.48498 * 109.47212 * 33.77724 * 3 2 1 6 6 H 1.48504 * 109.47070 * 153.77958 * 3 2 1 7 7 C 1.40204 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99593 * 30.51759 * 7 2 1 9 9 C 1.40472 * 120.00097 * 210.51665 * 7 2 1 10 10 C 1.39791 * 120.50307 * 215.67624 * 9 7 2 11 11 C 1.41061 * 119.02404 * 180.02562 * 10 9 7 12 12 C 1.40688 * 120.18304 * 179.97438 * 11 10 9 13 13 C 1.36357 * 119.90875 * 180.02562 * 12 11 10 14 14 C 1.38943 * 120.58190 * 0.25431 * 13 12 11 15 15 C 1.38056 * 120.65870 * 359.48181 * 14 13 12 16 16 F 1.35098 * 120.03194 * 180.24261 * 15 14 13 17 17 C 1.39362 * 119.93573 * 0.51216 * 15 14 13 18 18 N 1.38119 * 119.95825 * 179.72930 * 17 15 14 19 19 H 0.97004 * 119.47125 * 0.02562 * 18 17 15 20 20 C 1.34609 * 121.06022 * 180.02562 * 18 17 15 21 21 O 1.21682 * 120.01230 * 179.97438 * 20 18 17 22 22 H 0.96996 * 120.00065 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.49054 * 0.04561 * 10 9 7 24 24 H 1.08004 * 120.04587 * 0.03576 * 12 11 10 25 25 H 1.08003 * 119.70985 * 179.97438 * 13 12 11 26 26 H 1.07992 * 119.67075 * 179.74531 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4090 2.0925 -1.3970 5 1 1.4810 2.6283 0.7784 6 1 3.5766 1.4184 0.6186 7 6 2.0084 -1.2142 0.0005 8 1 1.5806 -2.0849 -0.4741 9 6 3.2672 -1.2981 0.6183 10 6 4.2707 -2.1070 0.0772 11 6 5.5231 -2.1685 0.7234 12 6 6.5501 -2.9752 0.2002 13 6 7.7584 -3.0309 0.8297 14 6 7.9854 -2.3008 1.9899 15 6 6.9962 -1.4974 2.5209 16 9 7.2322 -0.7891 3.6468 17 6 5.7520 -1.4222 1.8975 18 7 4.7602 -0.6229 2.4315 19 1 4.9383 -0.1174 3.2401 20 6 3.5504 -0.5342 1.8480 21 8 2.6903 0.1755 2.3351 22 1 -0.4850 0.8400 0.0004 23 1 4.0899 -2.6763 -0.8226 24 1 6.3819 -3.5494 -0.6989 25 1 8.5445 -3.6515 0.4255 26 1 8.9466 -2.3590 2.4787 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011981139.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = -51.855758 kcal Electronic energy + Delta-G solvation = -15720.049643 eV Core-core repulsion = 12870.646698 eV Total energy + Delta-G solvation = -2849.402946 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.42901 -39.97865 -37.72141 -34.61588 -34.41126 -32.52263 -29.76465 -28.74244 -25.86094 -22.54182 -22.24017 -21.68589 -18.73370 -17.74328 -17.19893 -16.46735 -15.69306 -15.35895 -15.12910 -14.77076 -14.28561 -14.06635 -13.71818 -13.07982 -12.86582 -12.14957 -11.93245 -11.77419 -11.42961 -11.23408 -10.90703 -10.59045 -10.38834 -9.93150 -9.54125 -9.20033 -9.02319 -7.66440 -7.45733 -7.28691 -4.66539 1.36286 1.88233 2.75146 2.90555 3.05172 3.13907 3.68422 3.81305 3.99244 4.31795 4.77775 5.00547 5.35580 5.47188 5.55764 5.90152 5.98010 6.32993 6.50962 6.58675 6.70680 6.92221 7.04099 7.21117 7.47734 7.51600 7.65414 7.71447 7.93441 8.09848 8.26053 8.91034 9.48204 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.037804 B = 0.009303 C = 0.008175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.477319 B = 3009.168852 C = 3424.433814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.092 3.908 3 Si 0.953 3.047 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.360 4.360 8 H 0.112 0.888 9 C 0.015 3.985 10 C -0.322 4.322 11 C 0.033 3.967 12 C -0.157 4.157 13 C -0.094 4.094 14 C -0.211 4.211 15 C 0.083 3.917 16 F -0.153 7.153 17 C 0.042 3.958 18 N -0.632 5.632 19 H 0.400 0.600 20 C 0.534 3.466 21 O -0.545 6.545 22 H 0.298 0.702 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.234 -1.318 -0.054 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.138 4.138 3 Si 0.778 3.222 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.385 4.385 8 H 0.130 0.870 9 C 0.009 3.991 10 C -0.343 4.343 11 C 0.030 3.970 12 C -0.176 4.176 13 C -0.113 4.113 14 C -0.231 4.231 15 C 0.061 3.939 16 F -0.132 7.132 17 C -0.057 4.057 18 N -0.272 5.272 19 H 0.237 0.763 20 C 0.329 3.671 21 O -0.426 6.426 22 H 0.109 0.891 23 H 0.134 0.866 24 H 0.139 0.861 25 H 0.134 0.866 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.336 -0.893 0.102 7.391 hybrid contribution 0.382 0.900 0.719 1.214 sum 7.719 0.007 0.821 7.762 Atomic orbital electron populations 1.69701 1.08910 1.32159 1.25441 1.26604 0.94807 1.03364 0.88987 0.85699 0.81386 0.78075 0.76997 1.20918 1.19847 1.18279 1.19614 0.97030 0.97562 1.24268 0.87042 1.19510 0.93958 0.94319 0.91355 1.20553 0.91245 1.17425 1.05094 1.17414 0.95481 0.93309 0.90750 1.20712 0.93140 1.02046 1.01681 1.20298 0.97098 0.99038 0.94906 1.20405 0.98647 1.03538 1.00473 1.17161 0.93820 0.97535 0.85382 1.91384 1.94933 1.77264 1.49581 1.17610 0.88184 1.01518 0.98425 1.43035 1.12004 1.43818 1.28314 0.76346 1.19365 0.80111 0.81620 0.86043 1.90584 1.44858 1.41419 1.65744 0.89133 0.86647 0.86134 0.86639 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.36 13.92 55.56 0.77 -17.58 15 2 C 0.09 2.28 4.73 -17.28 -0.08 2.20 15 3 Si 0.95 21.60 25.51 -169.99 -4.34 17.27 15 4 H -0.28 -5.97 7.11 56.52 0.40 -5.56 15 5 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.26 -6.22 5.49 56.52 0.31 -5.91 15 7 C -0.36 -9.09 9.35 -38.00 -0.36 -9.44 15 8 H 0.11 2.79 8.06 -52.48 -0.42 2.37 15 9 C 0.02 0.37 4.94 -104.70 -0.52 -0.14 15 10 C -0.32 -7.22 9.59 -37.93 -0.36 -7.58 15 11 C 0.03 0.70 5.74 -106.86 -0.61 0.08 15 12 C -0.16 -2.75 9.73 -39.33 -0.38 -3.13 15 13 C -0.09 -1.48 9.96 -40.00 -0.40 -1.88 15 14 C -0.21 -3.49 10.00 -39.39 -0.39 -3.89 15 15 C 0.08 1.57 7.31 -39.23 -0.29 1.28 15 16 F -0.15 -2.78 16.59 2.25 0.04 -2.75 15 17 C 0.04 0.88 6.66 -83.57 -0.56 0.32 15 18 N -0.63 -13.91 5.30 -10.62 -0.06 -13.97 15 19 H 0.40 7.96 8.19 -40.82 -0.33 7.62 15 20 C 0.53 13.19 5.88 -12.56 -0.07 13.12 15 21 O -0.54 -14.36 13.58 5.20 0.07 -14.29 15 22 H 0.30 6.59 8.29 -40.82 -0.34 6.25 15 23 H 0.12 2.41 8.06 -52.49 -0.42 1.98 15 24 H 0.12 1.84 8.06 -52.48 -0.42 1.42 15 25 H 0.12 1.42 8.06 -52.48 -0.42 1.00 15 26 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 235.27 15.07 3.55 3.55 Total: -1.00 -26.46 235.27 -5.66 -32.12 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -1.67 Total: 4.72 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -4.02 Total: -9.06 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.72 Total: -31.55 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.29 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.34 Total: 17.27 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -26.46 -5.66 -32.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011981139.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.737 kcal (2) G-P(sol) polarization free energy of solvation -26.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds