Wall clock time and date at job start Mon Mar 30 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86798 * 120.00274 * 2 1 4 4 H 1.48500 * 109.47201 * 240.00084 * 3 2 1 5 5 H 1.48500 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47091 * 119.99994 * 3 2 1 7 7 C 1.40163 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00343 * 197.69045 * 7 2 1 9 9 C 1.40495 * 119.99719 * 17.69447 * 7 2 1 10 10 C 1.39829 * 120.50627 * 24.47695 * 9 7 2 11 11 C 1.40951 * 119.02938 * 180.02562 * 10 9 7 12 12 C 1.40718 * 120.16471 * 180.20313 * 11 10 9 13 13 C 1.36282 * 119.89549 * 180.22971 * 12 11 10 14 14 C 1.39241 * 120.52867 * 359.49830 * 13 12 11 15 15 F 1.35100 * 119.69090 * 180.25805 * 14 13 12 16 16 C 1.38182 * 120.62113 * 0.27696 * 14 13 12 17 17 C 1.39019 * 119.96602 * 359.97438 * 16 14 13 18 18 N 1.38056 * 119.92117 * 179.97438 * 17 16 14 19 19 H 0.97000 * 119.46710 * 0.02813 * 18 17 16 20 20 C 1.34607 * 121.06414 * 180.02562 * 18 17 16 21 21 O 1.21684 * 120.00374 * 179.97438 * 20 18 17 22 22 H 0.97000 * 119.99907 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.48757 * 359.97438 * 10 9 7 24 24 H 1.08004 * 120.05341 * 359.97438 * 12 11 10 25 25 H 1.08000 * 119.73520 * 179.77685 * 13 12 11 26 26 H 1.08003 * 120.01252 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6963 -1.2125 5 1 1.2767 2.7464 -0.0006 6 1 3.0954 1.6963 1.2125 7 6 2.0084 -1.2138 0.0005 8 1 3.0501 -1.2358 0.2848 9 6 1.3558 -2.4019 -0.3687 10 6 0.2303 -2.3654 -1.1978 11 6 -0.4005 -3.5761 -1.5483 12 6 -1.5322 -3.5675 -2.3847 13 6 -2.1406 -4.7409 -2.7163 14 6 -1.6456 -5.9530 -2.2424 15 9 -2.2589 -7.1067 -2.5861 16 6 -0.5330 -5.9870 -1.4237 17 6 0.1028 -4.8034 -1.0666 18 7 1.2140 -4.8384 -0.2480 19 1 1.5439 -5.6925 0.0724 20 6 1.8470 -3.7065 0.1125 21 8 2.8246 -3.7598 0.8352 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1505 -1.4232 -1.5635 24 1 -1.9204 -2.6320 -2.7598 25 1 -3.0112 -4.7310 -3.3555 26 1 -0.1570 -6.9327 -1.0621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011981146.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:37 Heat of formation + Delta-G solvation = -75.280580 kcal Electronic energy + Delta-G solvation = -15385.714954 eV Core-core repulsion = 12535.296232 eV Total energy + Delta-G solvation = -2850.418722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.64833 -41.63525 -39.21352 -36.60603 -35.98242 -33.66100 -31.14577 -30.38996 -27.26969 -24.38440 -23.85010 -23.33060 -20.39087 -19.30634 -18.26713 -17.97638 -17.22539 -16.50746 -16.48970 -16.36666 -16.07930 -15.98438 -14.88373 -14.49852 -14.15022 -13.71893 -13.60168 -13.48020 -13.24738 -12.72645 -12.28376 -12.02846 -11.82718 -11.71393 -11.31120 -10.95023 -10.57491 -9.34423 -8.96888 -8.76642 -6.30531 -0.15515 0.40431 1.18750 1.38596 1.46883 1.51953 2.09610 2.16132 2.23866 2.77012 3.45808 3.54400 3.86762 3.94976 4.20497 4.37269 4.55211 4.76526 4.99931 5.06705 5.20797 5.37301 5.52319 5.61798 5.83054 5.99727 6.11006 6.27741 6.33570 6.61312 6.65659 7.24635 8.09860 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.037884 B = 0.007673 C = 0.006493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.913498 B = 3648.157146 C = 4311.536829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.030 3.970 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.256 1.256 6 H -0.263 1.263 7 C -0.419 4.419 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.259 4.259 11 C -0.038 4.038 12 C -0.104 4.104 13 C -0.144 4.144 14 C 0.050 3.950 15 F -0.148 7.148 16 C -0.160 4.160 17 C 0.092 3.908 18 N -0.618 5.618 19 H 0.412 0.588 20 C 0.519 3.481 21 O -0.589 6.589 22 H 0.301 0.699 23 H 0.122 0.878 24 H 0.141 0.859 25 H 0.154 0.846 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 -2.763 -4.545 6.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.190 4.190 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.180 1.180 6 H -0.187 1.187 7 C -0.446 4.446 8 H 0.097 0.903 9 C -0.014 4.014 10 C -0.281 4.281 11 C -0.041 4.041 12 C -0.123 4.123 13 C -0.164 4.164 14 C 0.030 3.970 15 F -0.127 7.127 16 C -0.181 4.181 17 C -0.008 4.008 18 N -0.257 5.257 19 H 0.251 0.749 20 C 0.315 3.685 21 O -0.473 6.473 22 H 0.112 0.888 23 H 0.140 0.860 24 H 0.159 0.841 25 H 0.171 0.829 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.770 -2.505 -4.156 6.145 hybrid contribution 0.391 -0.058 0.380 0.548 sum -3.379 -2.564 -3.776 5.678 Atomic orbital electron populations 1.69782 1.08993 1.31955 1.29552 1.26898 0.95742 1.04525 0.91796 0.85088 0.78876 0.74655 0.80295 1.18002 1.17960 1.18695 1.19729 0.98166 0.91711 1.34988 0.90345 1.19698 0.96258 0.90273 0.95162 1.20989 1.03490 0.96084 1.07573 1.18014 0.96536 0.91593 0.97929 1.20787 0.94486 0.98590 0.98401 1.20797 1.02262 0.90380 1.02919 1.17258 0.95310 0.81752 1.02662 1.91419 1.82285 1.47831 1.91192 1.20510 0.97584 0.97216 1.02826 1.17543 0.90878 0.94218 0.98123 1.43007 1.27144 1.09884 1.45652 0.74940 1.19548 0.82700 0.85951 0.80285 1.90674 1.28639 1.87735 1.40276 0.88771 0.86040 0.84088 0.82869 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.09 10.96 21.87 0.24 -36.85 15 2 C 0.03 1.41 5.15 85.32 0.44 1.85 15 3 Si 0.99 35.39 29.60 68.60 2.03 37.43 15 4 H -0.26 -8.95 7.11 99.48 0.71 -8.24 15 5 H -0.26 -8.30 7.11 99.48 0.71 -7.60 15 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 15 7 C -0.42 -22.09 8.77 23.29 0.20 -21.89 15 8 H 0.08 4.20 7.75 -2.91 -0.02 4.17 15 9 C -0.01 -0.42 5.73 -19.91 -0.11 -0.54 15 10 C -0.26 -12.66 8.48 23.32 0.20 -12.47 15 11 C -0.04 -1.62 5.74 -21.30 -0.12 -1.74 15 12 C -0.10 -3.66 9.72 22.42 0.22 -3.44 15 13 C -0.14 -4.43 9.94 22.05 0.22 -4.21 15 14 C 0.05 1.61 7.30 22.50 0.16 1.78 15 15 F -0.15 -4.51 17.26 44.97 0.78 -3.73 15 16 C -0.16 -5.29 9.83 22.44 0.22 -5.07 15 17 C 0.09 3.65 6.65 39.06 0.26 3.91 15 18 N -0.62 -25.48 5.30 -306.06 -1.62 -27.10 15 19 H 0.41 14.13 8.75 -92.71 -0.81 13.32 15 20 C 0.52 26.19 7.90 86.71 0.69 26.88 15 21 O -0.59 -32.25 17.36 -4.30 -0.07 -32.33 15 22 H 0.30 12.59 8.29 -92.71 -0.77 11.82 15 23 H 0.12 6.09 6.17 -2.91 -0.02 6.07 15 24 H 0.14 4.48 8.06 -2.91 -0.02 4.46 15 25 H 0.15 3.69 8.06 -2.91 -0.02 3.66 15 26 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 Total: -1.00 -58.66 242.14 4.15 -54.51 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.43 Total: 23.03 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 2.37 Total: -14.94 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -1.38 Total: -63.95 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.07 Total: -32.33 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.78 Total: -3.73 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.43 kcal Total: -58.66 4.15 -54.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011981146.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.775 kcal (2) G-P(sol) polarization free energy of solvation -58.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds