Wall clock time and date at job start Mon Mar 30 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86805 * 119.99573 * 2 1 4 4 H 1.48498 * 109.47044 * 275.38404 * 3 2 1 5 5 H 1.48490 * 109.47320 * 35.38738 * 3 2 1 6 6 H 1.48504 * 109.47153 * 155.39112 * 3 2 1 7 7 C 1.40197 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99385 * 341.73110 * 7 2 1 9 9 C 1.40474 * 120.00155 * 161.73247 * 7 2 1 10 10 C 1.39795 * 120.51021 * 330.20680 * 9 7 2 11 11 C 1.41045 * 119.02493 * 179.97438 * 10 9 7 12 12 C 1.40645 * 120.16848 * 179.97438 * 11 10 9 13 13 C 1.36555 * 119.84749 * 180.27741 * 12 11 10 14 14 F 1.35095 * 119.74865 * 179.74789 * 13 12 11 15 15 C 1.39152 * 120.49987 * 359.49954 * 13 12 11 16 16 C 1.37864 * 120.66864 * 0.50665 * 15 13 12 17 17 C 1.39138 * 120.01150 * 359.75016 * 16 15 13 18 18 N 1.38104 * 119.93406 * 179.97438 * 17 16 15 19 19 H 0.97005 * 119.46847 * 359.97438 * 18 17 16 20 20 C 1.34610 * 121.07178 * 180.02562 * 18 17 16 21 21 O 1.21683 * 119.99968 * 179.97438 * 20 18 17 22 22 H 0.97001 * 120.00558 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.48522 * 0.02562 * 10 9 7 24 24 H 1.08003 * 120.07128 * 0.02562 * 12 11 10 25 25 H 1.08001 * 119.66151 * 180.25692 * 15 13 12 26 26 H 1.08000 * 119.99139 * 179.77490 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3749 2.1122 -1.3939 5 1 1.5002 2.6172 0.8107 6 1 3.5911 1.4102 0.5830 7 6 2.0084 -1.2141 0.0005 8 1 1.5092 -2.1257 0.2942 9 6 3.3600 -1.2448 -0.3808 10 6 3.8576 -0.3225 -1.3059 11 6 5.2201 -0.3814 -1.6660 12 6 5.7459 0.5344 -2.5949 13 6 7.0647 0.4677 -2.9431 14 9 7.5665 1.3452 -3.8394 15 6 7.8966 -0.4938 -2.3778 16 6 7.4033 -1.4019 -1.4653 17 6 6.0622 -1.3596 -1.0969 18 7 5.5696 -2.2704 -0.1830 19 1 6.1651 -2.9356 0.1962 20 6 4.2762 -2.2506 0.1893 21 8 3.8627 -3.0627 0.9957 22 1 -0.4851 0.8400 -0.0004 23 1 3.2085 0.4248 -1.7379 24 1 5.1072 1.2860 -3.0348 25 1 8.9385 -0.5317 -2.6599 26 1 8.0580 -2.1459 -1.0361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011981151.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:37 Heat of formation + Delta-G solvation = -58.841778 kcal Electronic energy + Delta-G solvation = -15513.388038 eV Core-core repulsion = 12663.682156 eV Total energy + Delta-G solvation = -2849.705882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.32187 -40.07231 -37.62617 -34.90939 -34.28859 -32.74011 -30.14819 -28.41894 -25.77832 -23.15787 -22.10863 -21.72491 -19.02162 -17.46033 -17.12501 -16.58953 -15.61442 -15.35270 -15.05633 -14.81333 -14.41828 -14.10045 -13.51263 -12.97568 -12.85341 -12.48324 -12.08929 -12.02282 -11.77994 -11.22241 -11.03521 -10.35828 -10.20629 -9.98668 -9.82182 -9.31102 -9.05226 -7.85844 -7.51778 -7.26735 -4.78951 1.31427 1.81865 2.69259 2.91228 2.97900 3.13013 3.66595 3.71581 3.77573 4.27734 4.90521 4.98289 5.25893 5.40364 5.51594 5.80518 5.91440 6.32973 6.45841 6.51329 6.52604 6.79052 6.92695 7.05444 7.40403 7.44186 7.57244 7.73604 7.84516 8.01497 8.21375 8.87984 9.43301 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.010330 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.806365 B = 2709.805583 C = 3597.397630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.072 3.928 3 Si 0.932 3.068 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.238 1.238 7 C -0.332 4.332 8 H 0.109 0.891 9 C 0.015 3.985 10 C -0.346 4.346 11 C 0.041 3.959 12 C -0.189 4.189 13 C 0.096 3.904 14 F -0.156 7.156 15 C -0.205 4.205 16 C -0.102 4.102 17 C 0.071 3.929 18 N -0.635 5.635 19 H 0.400 0.600 20 C 0.538 3.462 21 O -0.547 6.547 22 H 0.300 0.700 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 2.073 -2.381 8.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.154 4.154 3 Si 0.756 3.244 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.357 4.357 8 H 0.127 0.873 9 C 0.008 3.992 10 C -0.368 4.368 11 C 0.038 3.962 12 C -0.209 4.209 13 C 0.076 3.924 14 F -0.135 7.135 15 C -0.225 4.225 16 C -0.123 4.123 17 C -0.027 4.027 18 N -0.275 5.275 19 H 0.236 0.764 20 C 0.332 3.668 21 O -0.426 6.426 22 H 0.111 0.889 23 H 0.131 0.869 24 H 0.143 0.857 25 H 0.139 0.861 26 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.195 1.812 -1.961 7.675 hybrid contribution 0.572 0.603 -0.100 0.837 sum 7.768 2.415 -2.060 8.391 Atomic orbital electron populations 1.69594 1.08559 1.32176 1.27145 1.26599 0.95108 1.02936 0.90799 0.85858 0.81180 0.77583 0.79778 1.18659 1.21498 1.16096 1.19729 0.91903 0.96648 1.27419 0.87326 1.19460 0.93120 0.92521 0.94059 1.20451 0.94035 1.11336 1.10935 1.17179 0.93240 0.91925 0.93808 1.20600 0.93812 1.02963 1.03502 1.17163 0.92572 0.90761 0.91903 1.91406 1.88132 1.67839 1.66113 1.20363 0.99443 0.99107 1.03576 1.20260 0.92791 0.99918 0.99376 1.17662 0.93199 0.94958 0.96883 1.43114 1.11340 1.31991 1.41031 0.76382 1.19199 0.81372 0.84819 0.81454 1.90754 1.75983 1.40872 1.34985 0.88871 0.86909 0.85691 0.86148 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.83 13.92 55.56 0.77 -17.06 15 2 C 0.07 1.70 5.41 -17.29 -0.09 1.60 15 3 Si 0.93 19.33 24.54 -169.99 -4.17 15.16 15 4 H -0.26 -5.26 6.72 56.52 0.38 -4.88 15 5 H -0.29 -5.67 7.11 56.52 0.40 -5.26 15 6 H -0.24 -5.17 6.86 56.52 0.39 -4.78 15 7 C -0.33 -8.37 9.25 -38.00 -0.35 -8.72 15 8 H 0.11 2.91 7.98 -52.49 -0.42 2.49 15 9 C 0.02 0.37 5.26 -104.69 -0.55 -0.18 15 10 C -0.35 -7.91 6.97 -37.94 -0.26 -8.18 15 11 C 0.04 0.87 5.74 -106.85 -0.61 0.26 15 12 C -0.19 -3.66 9.69 -39.28 -0.38 -4.04 15 13 C 0.10 1.72 7.24 -39.85 -0.29 1.44 15 14 F -0.16 -2.72 17.25 2.25 0.04 -2.68 15 15 C -0.21 -3.32 10.00 -39.38 -0.39 -3.72 15 16 C -0.10 -1.65 9.86 -39.38 -0.39 -2.04 15 17 C 0.07 1.38 6.65 -83.63 -0.56 0.82 15 18 N -0.63 -12.29 5.30 -10.66 -0.06 -12.34 15 19 H 0.40 6.39 8.75 -40.82 -0.36 6.03 15 20 C 0.54 12.49 7.90 -12.56 -0.10 12.40 15 21 O -0.55 -13.81 17.41 5.20 0.09 -13.72 15 22 H 0.30 6.25 8.29 -40.82 -0.34 5.92 15 23 H 0.11 2.55 4.76 -52.48 -0.25 2.30 15 24 H 0.13 2.29 8.06 -52.48 -0.42 1.87 15 25 H 0.12 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 LS Contribution 237.05 15.07 3.57 3.57 Total: -1.00 -26.21 237.05 -5.20 -31.41 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -1.46 Total: 6.03 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -3.98 Total: -10.36 kcal Atomic # 7 Polarization: -30.12 SS G_CDS: 0.72 Total: -29.40 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.17 Total: 15.16 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -26.21 -5.20 -31.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011981151.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.431 kcal (2) G-P(sol) polarization free energy of solvation -26.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds