Wall clock time and date at job start Mon Mar 30 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86805 * 119.99573 * 2 1 4 4 H 1.48498 * 109.47044 * 275.38404 * 3 2 1 5 5 H 1.48490 * 109.47320 * 35.38738 * 3 2 1 6 6 H 1.48504 * 109.47153 * 155.39112 * 3 2 1 7 7 C 1.40197 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99385 * 341.73110 * 7 2 1 9 9 C 1.40474 * 120.00155 * 161.73247 * 7 2 1 10 10 C 1.39795 * 120.51021 * 330.20680 * 9 7 2 11 11 C 1.41045 * 119.02493 * 179.97438 * 10 9 7 12 12 C 1.40645 * 120.16848 * 179.97438 * 11 10 9 13 13 C 1.36555 * 119.84749 * 180.27741 * 12 11 10 14 14 F 1.35095 * 119.74865 * 179.74789 * 13 12 11 15 15 C 1.39152 * 120.49987 * 359.49954 * 13 12 11 16 16 C 1.37864 * 120.66864 * 0.50665 * 15 13 12 17 17 C 1.39138 * 120.01150 * 359.75016 * 16 15 13 18 18 N 1.38104 * 119.93406 * 179.97438 * 17 16 15 19 19 H 0.97005 * 119.46847 * 359.97438 * 18 17 16 20 20 C 1.34610 * 121.07178 * 180.02562 * 18 17 16 21 21 O 1.21683 * 119.99968 * 179.97438 * 20 18 17 22 22 H 0.97001 * 120.00558 * 0.02562 * 1 2 3 23 23 H 1.08003 * 120.48522 * 0.02562 * 10 9 7 24 24 H 1.08003 * 120.07128 * 0.02562 * 12 11 10 25 25 H 1.08001 * 119.66151 * 180.25692 * 15 13 12 26 26 H 1.08000 * 119.99139 * 179.77490 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3749 2.1122 -1.3939 5 1 1.5002 2.6172 0.8107 6 1 3.5911 1.4102 0.5830 7 6 2.0084 -1.2141 0.0005 8 1 1.5092 -2.1257 0.2942 9 6 3.3600 -1.2448 -0.3808 10 6 3.8576 -0.3225 -1.3059 11 6 5.2201 -0.3814 -1.6660 12 6 5.7459 0.5344 -2.5949 13 6 7.0647 0.4677 -2.9431 14 9 7.5665 1.3452 -3.8394 15 6 7.8966 -0.4938 -2.3778 16 6 7.4033 -1.4019 -1.4653 17 6 6.0622 -1.3596 -1.0969 18 7 5.5696 -2.2704 -0.1830 19 1 6.1651 -2.9356 0.1962 20 6 4.2762 -2.2506 0.1893 21 8 3.8627 -3.0627 0.9957 22 1 -0.4851 0.8400 -0.0004 23 1 3.2085 0.4248 -1.7379 24 1 5.1072 1.2860 -3.0348 25 1 8.9385 -0.5317 -2.6599 26 1 8.0580 -2.1459 -1.0361 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000011981151.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:37 Heat of formation + Delta-G solvation = -75.811356 kcal Electronic energy + Delta-G solvation = -15514.123894 eV Core-core repulsion = 12663.682156 eV Total energy + Delta-G solvation = -2850.441738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.73456 -41.75140 -39.29496 -36.61377 -35.94456 -34.41161 -31.74070 -29.98747 -27.45855 -24.88010 -23.62150 -23.36274 -20.68553 -19.05459 -18.67924 -18.26845 -17.30162 -16.98712 -16.51666 -16.39060 -16.11131 -15.70475 -15.09863 -14.50660 -14.49063 -13.92398 -13.78433 -13.66854 -13.40669 -12.87562 -12.69616 -11.92076 -11.90166 -11.61678 -11.51290 -10.97068 -10.75170 -9.44071 -9.19934 -8.88256 -6.58206 -0.28102 0.27522 1.05278 1.24029 1.30144 1.46368 1.97488 2.05877 2.15687 2.64243 3.25621 3.47432 3.74741 3.80885 4.10005 4.32194 4.41101 4.76171 4.90916 4.93131 5.09513 5.24278 5.33186 5.42184 5.64579 5.83885 5.98209 6.00023 6.18229 6.31960 6.43680 7.17691 7.84227 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.010330 C = 0.007782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.806365 B = 2709.805583 C = 3597.397630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.048 3.952 3 Si 0.974 3.026 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.395 4.395 8 H 0.067 0.933 9 C -0.002 4.002 10 C -0.324 4.324 11 C -0.001 4.001 12 C -0.180 4.180 13 C 0.087 3.913 14 F -0.150 7.150 15 C -0.168 4.168 16 C -0.089 4.089 17 C 0.070 3.930 18 N -0.614 5.614 19 H 0.419 0.581 20 C 0.528 3.472 21 O -0.580 6.580 22 H 0.309 0.691 23 H 0.111 0.889 24 H 0.131 0.869 25 H 0.163 0.837 26 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 3.035 -3.904 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.173 4.173 3 Si 0.796 3.204 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.422 4.422 8 H 0.085 0.915 9 C -0.008 4.008 10 C -0.346 4.346 11 C -0.003 4.003 12 C -0.200 4.200 13 C 0.068 3.932 14 F -0.129 7.129 15 C -0.187 4.187 16 C -0.109 4.109 17 C -0.028 4.028 18 N -0.254 5.254 19 H 0.259 0.741 20 C 0.322 3.678 21 O -0.463 6.463 22 H 0.120 0.880 23 H 0.129 0.871 24 H 0.149 0.851 25 H 0.181 0.819 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.784 2.772 -3.500 12.602 hybrid contribution -0.240 0.321 0.100 0.413 sum 11.544 3.093 -3.400 12.425 Atomic orbital electron populations 1.69594 1.09290 1.33143 1.30219 1.27072 0.95587 1.04408 0.90234 0.85257 0.79460 0.75362 0.80326 1.17443 1.19601 1.17761 1.19443 0.93191 0.96213 1.33326 0.91482 1.19570 0.93049 0.93637 0.94579 1.20672 0.95183 1.09921 1.08856 1.17347 0.92922 0.94120 0.95944 1.20761 0.94903 1.02132 1.02188 1.17314 0.92261 0.91444 0.92217 1.91438 1.87851 1.67720 1.65863 1.20958 1.01063 0.96240 1.00442 1.20754 0.91481 1.00371 0.98309 1.18027 0.94529 0.94068 0.96222 1.42921 1.10283 1.32006 1.40232 0.74128 1.19165 0.82525 0.84747 0.81396 1.90722 1.76840 1.42171 1.36578 0.87966 0.87118 0.85107 0.81929 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.55 13.92 21.87 0.30 -40.24 15 2 C 0.05 2.42 5.41 85.33 0.46 2.89 15 3 Si 0.97 40.53 24.54 68.60 1.68 42.22 15 4 H -0.25 -9.74 6.72 99.48 0.67 -9.07 15 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.25 -11.02 6.86 99.48 0.68 -10.34 15 7 C -0.39 -21.66 9.25 23.29 0.22 -21.44 15 8 H 0.07 4.06 7.98 -2.91 -0.02 4.03 15 9 C 0.00 -0.10 5.26 -19.91 -0.10 -0.21 15 10 C -0.32 -14.82 6.97 23.34 0.16 -14.66 15 11 C 0.00 -0.02 5.74 -21.31 -0.12 -0.15 15 12 C -0.18 -6.30 9.69 22.46 0.22 -6.09 15 13 C 0.09 2.65 7.24 22.10 0.16 2.81 15 14 F -0.15 -4.43 17.25 44.97 0.78 -3.65 15 15 C -0.17 -4.17 10.00 22.40 0.22 -3.94 15 16 C -0.09 -2.26 9.86 22.40 0.22 -2.04 15 17 C 0.07 2.44 6.65 39.07 0.26 2.70 15 18 N -0.61 -22.44 5.30 -305.95 -1.62 -24.07 15 19 H 0.42 12.05 8.75 -92.70 -0.81 11.24 15 20 C 0.53 24.99 7.90 86.71 0.69 25.68 15 21 O -0.58 -30.62 17.41 -4.30 -0.07 -30.69 15 22 H 0.31 13.67 8.29 -92.71 -0.77 12.90 15 23 H 0.11 5.03 4.76 -2.91 -0.01 5.01 15 24 H 0.13 4.39 8.06 -2.91 -0.02 4.36 15 25 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 26 H 0.17 2.84 8.06 -2.91 -0.02 2.82 15 Total: -1.00 -60.45 237.05 3.82 -56.63 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.37 Total: 14.24 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 2.38 Total: -14.45 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -1.32 Total: -64.31 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.07 Total: -30.69 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.78 Total: -3.65 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.68 Total: 42.22 kcal Total: -60.45 3.82 -56.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011981151.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.179 kcal (2) G-P(sol) polarization free energy of solvation -60.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds