Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29540 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48493 * 109.47210 * 239.99625 * 3 2 1 5 5 H 1.48504 * 109.46806 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47339 * 119.99690 * 3 2 1 7 7 C 1.46523 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99872 * 192.16708 * 7 2 1 9 9 C 1.39276 * 120.00083 * 12.16725 * 7 2 1 10 10 C 1.41524 * 120.74977 * 25.20551 * 9 7 2 11 11 C 1.37384 * 120.08488 * 180.02562 * 10 9 7 12 12 C 1.38597 * 121.60761 * 359.96251 * 11 10 9 13 13 N 1.48019 * 119.44858 * 179.97438 * 12 11 10 14 14 O 1.31703 * 119.99846 * 0.02562 * 13 12 11 15 15 O 1.31703 * 120.00241 * 179.72305 * 13 12 11 16 16 C 1.39223 * 121.10462 * 0.27331 * 12 11 10 17 17 N 1.37217 * 133.67074 * 180.37473 * 16 12 11 18 18 H 0.96994 * 126.04433 * 359.34342 * 17 16 12 19 19 N 1.40074 * 107.91874 * 179.55625 * 17 16 12 20 20 C 1.30837 * 109.52290 * 359.78810 * 19 17 16 21 21 C 1.40133 * 108.74129 * 359.97438 * 20 19 17 22 22 H 0.96998 * 119.99898 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.95959 * 0.02838 * 10 9 7 24 24 H 1.07997 * 119.19804 * 179.97438 * 11 10 9 25 25 H 1.08002 * 125.62842 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2954 0.0000 0.0000 3 14 2.2294 1.6177 0.0000 4 1 3.0832 1.6963 -1.2124 5 1 1.2644 2.7464 -0.0006 6 1 3.0832 1.6965 1.2125 7 6 2.0280 -1.2689 0.0006 8 1 3.0898 -1.2793 0.1977 9 6 1.3551 -2.4617 -0.2531 10 6 0.1577 -2.4706 -1.0075 11 6 -0.4951 -3.6551 -1.2491 12 6 -0.0107 -4.8622 -0.7706 13 7 -0.7531 -6.1099 -1.0589 14 8 -1.8639 -6.0669 -1.7652 15 8 -0.2998 -7.2637 -0.6142 16 6 1.1592 -4.9203 -0.0181 17 7 1.8608 -5.9452 0.5651 18 1 1.6195 -6.8845 0.5474 19 7 2.9844 -5.3947 1.1947 20 6 2.9948 -4.0987 1.0158 21 6 1.8729 -3.7400 0.2565 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2433 -1.5452 -1.3938 24 1 -1.4080 -3.6453 -1.8261 25 1 3.7447 -3.4178 1.3907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034110176.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = 74.812416 kcal Electronic energy + Delta-G solvation = -15518.421515 eV Core-core repulsion = 12694.431275 eV Total energy + Delta-G solvation = -2823.990240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.45650 -37.39752 -36.32538 -34.31259 -32.83841 -31.74292 -29.62235 -28.80823 -27.03139 -23.88384 -21.94521 -21.39611 -20.51742 -18.61074 -17.45128 -16.71411 -16.10829 -15.68411 -14.82884 -14.66929 -14.05449 -13.84247 -13.72160 -12.88350 -12.74144 -12.12991 -11.85036 -11.55582 -11.10598 -10.79868 -10.61444 -10.19668 -10.12709 -9.86891 -9.59726 -9.46249 -9.40149 -8.16164 -7.91121 -7.68543 -5.49585 0.80205 1.96117 2.40012 2.44991 2.52201 2.74704 2.84213 3.10396 3.29179 3.48790 3.62651 4.73679 5.33504 5.59004 5.65231 5.87900 5.91060 6.18468 6.30705 6.45454 6.75973 6.92853 7.04082 7.16434 7.43522 7.52867 7.65025 7.89339 8.02107 8.37772 8.39770 8.80835 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.008495 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.022548 B = 3295.419564 C = 4095.628671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.052 3.948 3 Si 0.940 3.060 4 H -0.248 1.248 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.317 4.317 8 H 0.113 0.887 9 C 0.148 3.852 10 C -0.186 4.186 11 C -0.013 4.013 12 C -0.134 4.134 13 N 0.054 4.946 14 O -0.318 6.318 15 O -0.347 6.347 16 C 0.212 3.788 17 N -0.478 5.478 18 H 0.443 0.557 19 N -0.315 5.315 20 C 0.092 3.908 21 C -0.255 4.255 22 H 0.313 0.687 23 H 0.142 0.858 24 H 0.126 0.874 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 9.052 1.070 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.183 4.183 3 Si 0.760 3.240 4 H -0.172 1.172 5 H -0.189 1.189 6 H -0.173 1.173 7 C -0.341 4.341 8 H 0.131 0.869 9 C 0.142 3.858 10 C -0.208 4.208 11 C -0.034 4.034 12 C -0.243 4.243 13 N 0.471 4.529 14 O -0.472 6.472 15 O -0.494 6.494 16 C 0.085 3.915 17 N -0.193 5.193 18 H 0.291 0.709 19 N -0.136 5.136 20 C -0.096 4.096 21 C -0.267 4.267 22 H 0.126 0.874 23 H 0.159 0.841 24 H 0.144 0.856 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.457 8.249 1.669 10.031 hybrid contribution -0.738 0.372 -0.420 0.927 sum 4.720 8.621 1.250 9.908 Atomic orbital electron populations 1.69086 1.09310 1.33494 1.18752 1.28067 0.95184 1.03571 0.91522 0.85764 0.80269 0.76284 0.81666 1.17182 1.18911 1.17292 1.21590 0.97401 0.89342 1.25769 0.86931 1.18278 0.90924 0.89616 0.87026 1.21275 0.98163 0.96435 1.04899 1.20186 0.98167 0.89437 0.95619 1.18751 0.99255 0.82983 1.23303 1.49886 1.01061 1.03239 0.98668 1.96099 1.12026 1.95679 1.43439 1.96010 1.74610 1.15996 1.62781 1.18054 0.91382 0.89352 0.92730 1.46549 1.19125 1.09074 1.44558 0.70924 1.76976 1.05588 1.10169 1.20861 1.23310 0.97045 0.92321 0.96903 1.19479 1.00864 0.92668 1.13677 0.87371 0.84100 0.85597 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -11.96 10.84 55.98 0.61 -11.35 15 2 C 0.05 0.85 5.42 -15.18 -0.08 0.76 15 3 Si 0.94 11.71 29.66 -169.99 -5.04 6.67 15 4 H -0.25 -3.13 7.11 56.52 0.40 -2.72 15 5 H -0.27 -3.26 7.11 56.52 0.40 -2.86 15 6 H -0.25 -3.10 7.11 56.52 0.40 -2.70 15 7 C -0.32 -5.71 9.25 -35.86 -0.33 -6.04 15 8 H 0.11 1.76 7.96 -52.49 -0.42 1.34 15 9 C 0.15 3.07 5.77 -104.69 -0.60 2.46 15 10 C -0.19 -3.91 8.77 -38.64 -0.34 -4.25 15 11 C -0.01 -0.30 9.47 -39.76 -0.38 -0.67 15 12 C -0.13 -3.30 6.92 -79.45 -0.55 -3.85 15 13 N 0.05 1.45 4.98 34.21 0.17 1.62 15 14 O -0.32 -8.72 19.07 -31.57 -0.60 -9.33 15 15 O -0.35 -9.33 17.79 -31.57 -0.56 -9.89 15 16 C 0.21 4.98 6.90 -84.18 -0.58 4.40 15 17 N -0.48 -10.55 7.24 32.34 0.23 -10.32 15 18 H 0.44 9.42 7.36 -182.62 -1.34 8.07 15 19 N -0.32 -6.49 12.62 30.68 0.39 -6.11 15 20 C 0.09 1.76 11.89 -17.26 -0.21 1.55 15 21 C -0.26 -5.50 6.20 -104.71 -0.65 -6.15 15 22 H 0.31 4.62 8.27 -40.82 -0.34 4.29 15 23 H 0.14 2.81 6.06 -52.48 -0.32 2.49 15 24 H 0.13 2.69 7.49 -52.49 -0.39 2.30 15 25 H 0.18 2.67 8.06 -52.49 -0.42 2.25 15 LS Contribution 239.30 15.07 3.61 3.61 Total: -1.00 -27.48 239.30 -6.95 -34.43 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -2.03 Total: 12.46 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.72 Total: -11.79 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 1.40 Total: -26.16 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.16 Total: -19.22 kcal Atomic # 14 Polarization: 11.71 SS G_CDS: -5.04 Total: 6.67 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.48 -6.95 -34.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034110176.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.242 kcal (2) G-P(sol) polarization free energy of solvation -27.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds