Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29540 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48493 * 109.47210 * 239.99625 * 3 2 1 5 5 H 1.48504 * 109.46806 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47339 * 119.99690 * 3 2 1 7 7 C 1.46523 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99872 * 192.16708 * 7 2 1 9 9 C 1.39276 * 120.00083 * 12.16725 * 7 2 1 10 10 C 1.41524 * 120.74977 * 25.20551 * 9 7 2 11 11 C 1.37384 * 120.08488 * 180.02562 * 10 9 7 12 12 C 1.38597 * 121.60761 * 359.96251 * 11 10 9 13 13 N 1.48019 * 119.44858 * 179.97438 * 12 11 10 14 14 O 1.31703 * 119.99846 * 0.02562 * 13 12 11 15 15 O 1.31703 * 120.00241 * 179.72305 * 13 12 11 16 16 C 1.39223 * 121.10462 * 0.27331 * 12 11 10 17 17 N 1.37217 * 133.67074 * 180.37473 * 16 12 11 18 18 H 0.96994 * 126.04433 * 359.34342 * 17 16 12 19 19 N 1.40074 * 107.91874 * 179.55625 * 17 16 12 20 20 C 1.30837 * 109.52290 * 359.78810 * 19 17 16 21 21 C 1.40133 * 108.74129 * 359.97438 * 20 19 17 22 22 H 0.96998 * 119.99898 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.95959 * 0.02838 * 10 9 7 24 24 H 1.07997 * 119.19804 * 179.97438 * 11 10 9 25 25 H 1.08002 * 125.62842 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2954 0.0000 0.0000 3 14 2.2294 1.6177 0.0000 4 1 3.0832 1.6963 -1.2124 5 1 1.2644 2.7464 -0.0006 6 1 3.0832 1.6965 1.2125 7 6 2.0280 -1.2689 0.0006 8 1 3.0898 -1.2793 0.1977 9 6 1.3551 -2.4617 -0.2531 10 6 0.1577 -2.4706 -1.0075 11 6 -0.4951 -3.6551 -1.2491 12 6 -0.0107 -4.8622 -0.7706 13 7 -0.7531 -6.1099 -1.0589 14 8 -1.8639 -6.0669 -1.7652 15 8 -0.2998 -7.2637 -0.6142 16 6 1.1592 -4.9203 -0.0181 17 7 1.8608 -5.9452 0.5651 18 1 1.6195 -6.8845 0.5474 19 7 2.9844 -5.3947 1.1947 20 6 2.9948 -4.0987 1.0158 21 6 1.8729 -3.7400 0.2565 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2433 -1.5452 -1.3938 24 1 -1.4080 -3.6453 -1.8261 25 1 3.7447 -3.4178 1.3907 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034110176.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = 57.149094 kcal Electronic energy + Delta-G solvation = -15519.187454 eV Core-core repulsion = 12694.431275 eV Total energy + Delta-G solvation = -2824.756179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.11091 -39.08299 -37.96971 -35.88679 -34.57480 -33.37879 -31.26094 -30.51302 -28.73851 -25.57237 -23.59968 -23.07655 -22.11003 -20.16527 -19.16197 -18.43008 -17.63103 -17.19235 -16.49020 -16.42055 -15.60753 -15.40730 -15.20529 -14.42133 -14.05281 -13.64195 -13.20067 -13.03014 -12.54560 -12.27548 -11.97206 -11.76519 -11.65745 -11.49628 -11.39404 -11.38732 -10.99899 -9.80050 -9.39906 -9.38389 -7.18099 -1.04354 0.36505 0.89005 1.16331 1.39324 1.56123 1.66392 1.71899 1.82726 2.09131 2.23952 3.06467 3.81945 3.90992 4.08634 4.23477 4.32481 4.51575 4.70034 4.83562 5.15284 5.25681 5.44907 5.59203 5.73589 5.90032 5.97777 6.22668 6.29110 6.63786 6.75321 7.43422 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.008495 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.022548 B = 3295.419564 C = 4095.628671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.013 3.987 3 Si 1.017 2.983 4 H -0.244 1.244 5 H -0.263 1.263 6 H -0.239 1.239 7 C -0.227 4.227 8 H 0.157 0.843 9 C 0.076 3.924 10 C -0.130 4.130 11 C -0.070 4.070 12 C -0.105 4.105 13 N 0.048 4.952 14 O -0.423 6.423 15 O -0.428 6.428 16 C 0.167 3.833 17 N -0.478 5.478 18 H 0.441 0.559 19 N -0.319 5.319 20 C 0.100 3.900 21 C -0.242 4.242 22 H 0.333 0.667 23 H 0.156 0.844 24 H 0.121 0.879 25 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.981 15.556 2.712 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.222 4.222 3 Si 0.832 3.168 4 H -0.168 1.168 5 H -0.187 1.187 6 H -0.162 1.162 7 C -0.250 4.250 8 H 0.175 0.825 9 C 0.070 3.930 10 C -0.153 4.153 11 C -0.091 4.091 12 C -0.224 4.224 13 N 0.428 4.572 14 O -0.549 6.549 15 O -0.552 6.552 16 C 0.039 3.961 17 N -0.192 5.192 18 H 0.288 0.712 19 N -0.141 5.141 20 C -0.086 4.086 21 C -0.254 4.254 22 H 0.148 0.852 23 H 0.173 0.827 24 H 0.138 0.862 25 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.232 14.481 3.224 17.474 hybrid contribution -1.458 -0.516 -0.658 1.681 sum 7.774 13.966 2.567 16.189 Atomic orbital electron populations 1.69050 1.10959 1.36238 1.15055 1.29159 0.95818 1.06054 0.91145 0.84634 0.78789 0.71337 0.82018 1.16764 1.18695 1.16180 1.22722 0.99171 0.88820 1.14296 0.82532 1.18479 0.92362 0.90647 0.91529 1.21598 0.96417 0.95843 1.01457 1.20189 0.99820 0.89700 0.99376 1.19353 0.98795 0.83063 1.21200 1.49819 1.02086 1.03403 1.01864 1.96000 1.14714 1.95874 1.48280 1.95901 1.75877 1.17207 1.66200 1.18385 0.92202 0.90880 0.94659 1.46729 1.19307 1.09103 1.44052 0.71216 1.77002 1.04887 1.11332 1.20862 1.24088 0.96888 0.92140 0.95499 1.19776 1.00764 0.91992 1.12889 0.85163 0.82695 0.86157 0.74847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -19.84 10.84 23.21 0.25 -19.59 15 2 C 0.01 0.32 5.42 87.19 0.47 0.80 15 3 Si 1.02 16.41 29.66 68.60 2.03 18.45 15 4 H -0.24 -3.96 7.11 99.48 0.71 -3.25 15 5 H -0.26 -4.31 7.11 99.48 0.71 -3.61 15 6 H -0.24 -3.64 7.11 99.48 0.71 -2.93 15 7 C -0.23 -6.36 9.25 24.68 0.23 -6.13 15 8 H 0.16 3.21 7.96 -2.91 -0.02 3.18 15 9 C 0.08 2.81 5.77 -19.91 -0.11 2.70 15 10 C -0.13 -5.22 8.77 22.88 0.20 -5.02 15 11 C -0.07 -3.30 9.47 22.15 0.21 -3.09 15 12 C -0.11 -5.55 6.92 36.70 0.25 -5.30 15 13 N 0.05 2.87 4.98 -45.69 -0.23 2.65 15 14 O -0.42 -26.74 19.07 3.51 0.07 -26.68 15 15 O -0.43 -26.15 17.79 3.51 0.06 -26.09 15 16 C 0.17 8.01 6.90 39.12 0.27 8.28 15 17 N -0.48 -21.64 7.24 -51.58 -0.37 -22.02 15 18 H 0.44 20.16 7.36 -213.34 -1.57 18.59 15 19 N -0.32 -12.49 12.62 -56.85 -0.72 -13.21 15 20 C 0.10 3.37 11.89 85.30 1.01 4.38 15 21 C -0.24 -9.70 6.20 -19.92 -0.12 -9.82 15 22 H 0.33 7.78 8.27 -92.71 -0.77 7.01 15 23 H 0.16 5.63 6.06 -2.91 -0.02 5.61 15 24 H 0.12 5.64 7.49 -2.91 -0.02 5.62 15 25 H 0.24 5.05 8.06 -2.91 -0.02 5.03 15 Total: -1.00 -67.65 239.30 3.21 -64.44 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.30 Total: 35.25 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 2.41 Total: -13.20 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -1.07 Total: -52.17 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: 0.13 Total: -52.77 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: 2.03 Total: 18.45 kcal Total: -67.65 3.21 -64.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034110176.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.589 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds