Wall clock time and date at job start Mon Mar 30 2020 03:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31182 * 1 3 3 Si 1.86800 * 120.00090 * 2 1 4 4 H 1.48498 * 109.47270 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47084 * 120.00342 * 3 2 1 6 6 H 1.48498 * 109.47281 * 239.99781 * 3 2 1 7 7 C 1.39174 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99886 * 204.63095 * 7 2 1 9 9 N 1.36968 * 119.99689 * 24.62217 * 7 2 1 10 10 C 1.36211 * 119.63308 * 29.77977 * 9 7 2 11 11 C 1.35375 * 120.66394 * 179.97438 * 10 9 7 12 12 Cl 1.73606 * 120.03932 * 180.02562 * 11 10 9 13 13 C 1.40431 * 119.92483 * 0.02562 * 11 10 9 14 14 C 1.36502 * 119.28129 * 359.97438 * 13 11 10 15 15 Cl 1.73598 * 120.33036 * 180.02562 * 14 13 11 16 16 C 1.34658 * 119.62920 * 209.49863 * 9 7 2 17 17 O 1.22035 * 119.97425 * 0.03317 * 16 9 7 18 18 H 0.97001 * 120.00132 * 185.70241 * 1 2 3 19 19 H 1.07999 * 119.66800 * 359.95341 * 10 9 7 20 20 H 1.08004 * 120.36269 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2458 1.6177 0.0000 4 1 1.2809 2.7465 0.0006 5 1 3.0997 1.6963 1.2125 6 1 3.0996 1.6964 -1.2124 7 6 2.0077 -1.2053 -0.0005 8 1 3.0141 -1.2479 0.3893 9 7 1.4162 -2.3373 -0.4953 10 6 0.4881 -2.2339 -1.4868 11 6 -0.1091 -3.3390 -1.9915 12 17 -1.2894 -3.1884 -3.2556 13 6 0.2272 -4.6073 -1.4912 14 6 1.1576 -4.7079 -0.4975 15 17 1.5944 -6.2622 0.1405 16 6 1.7630 -3.5404 0.0001 17 8 2.5995 -3.6173 0.8853 18 1 -0.4850 -0.8359 0.0835 19 1 0.2258 -1.2604 -1.8741 20 1 -0.2452 -5.4937 -1.8884 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034382010.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:07 Heat of formation + Delta-G solvation = -38.944611 kcal Electronic energy + Delta-G solvation = -12133.105724 eV Core-core repulsion = 9574.333079 eV Total energy + Delta-G solvation = -2558.772645 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 232.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.37821 -38.23883 -37.80828 -37.26981 -35.98251 -33.54621 -30.54064 -27.82852 -24.87872 -23.91958 -21.11439 -18.76308 -18.20041 -17.48456 -16.99171 -16.34731 -15.63673 -15.55519 -14.58878 -13.97245 -13.84032 -13.73432 -13.25002 -12.87715 -12.40754 -12.22686 -12.13399 -11.89491 -11.84151 -11.19172 -10.89449 -10.71253 -9.54094 -8.87601 -6.77178 -0.25032 0.62220 0.77599 1.40652 1.50778 1.53737 1.83309 2.13425 2.30714 2.51264 2.82524 3.74752 3.81230 4.07851 4.62557 4.77707 5.01553 5.24528 5.40337 5.91530 6.11998 6.56245 7.20588 7.83913 Molecular weight = 232.98amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.011527 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.355237 B = 2428.589470 C = 3482.625485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.005 3.995 3 Si 1.132 2.868 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.440 4.440 8 H 0.103 0.897 9 N -0.297 5.297 10 C 0.094 3.906 11 C -0.153 4.153 12 Cl -0.037 7.037 13 C -0.011 4.011 14 C -0.198 4.198 15 Cl -0.044 7.044 16 C 0.446 3.554 17 O -0.604 6.604 18 H 0.277 0.723 19 H 0.165 0.835 20 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 -1.964 -6.285 7.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.206 4.206 3 Si 0.946 3.054 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.567 4.567 8 H 0.121 0.879 9 N 0.013 4.987 10 C -0.044 4.044 11 C -0.184 4.184 12 Cl -0.009 7.009 13 C -0.036 4.036 14 C -0.230 4.230 15 Cl -0.015 7.015 16 C 0.255 3.745 17 O -0.494 6.494 18 H 0.089 0.911 19 H 0.182 0.818 20 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.310 -0.515 -5.798 6.262 hybrid contribution -0.019 -2.070 0.314 2.094 sum -2.329 -2.585 -5.484 6.494 Atomic orbital electron populations 1.70804 1.07768 1.32042 1.34657 1.28621 0.95763 1.05857 0.90397 0.82764 0.74483 0.68763 0.79342 1.18664 1.19085 1.17776 1.21358 1.02613 0.86718 1.46060 0.87917 1.41690 1.26378 1.08349 1.22244 1.21902 0.92917 1.00674 0.88916 1.19355 1.04054 0.92558 1.02439 1.98305 1.55435 1.98134 1.49031 1.21061 0.93199 0.97406 0.91901 1.21009 1.08881 0.87055 1.06098 1.98265 1.92943 1.23498 1.86826 1.17237 0.87576 0.84153 0.85554 1.90785 1.37803 1.86384 1.34451 0.91110 0.81818 0.81152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.11 12.39 21.69 0.27 -39.84 14 2 C 0.00 0.22 4.79 85.01 0.41 0.63 14 3 Si 1.13 39.57 29.99 68.60 2.06 41.63 14 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 14 5 H -0.27 -9.03 7.11 99.48 0.71 -8.32 14 6 H -0.25 -8.13 7.11 99.48 0.71 -7.42 14 7 C -0.44 -22.77 8.96 84.12 0.75 -22.02 14 8 H 0.10 5.61 7.60 -2.91 -0.02 5.59 14 9 N -0.30 -14.93 2.61 -476.47 -1.24 -16.18 14 10 C 0.09 4.06 8.03 83.35 0.67 4.73 14 11 C -0.15 -5.63 6.29 22.14 0.14 -5.49 14 12 Cl -0.04 -1.11 28.95 -2.72 -0.08 -1.19 14 13 C -0.01 -0.40 9.69 22.40 0.22 -0.19 14 14 C -0.20 -8.53 6.34 22.44 0.14 -8.39 14 15 Cl -0.04 -1.68 28.55 -2.72 -0.08 -1.75 14 16 C 0.45 23.18 7.36 84.84 0.62 23.81 14 17 O -0.60 -35.49 16.32 -5.43 -0.09 -35.58 14 18 H 0.28 13.92 6.93 -92.71 -0.64 13.27 14 19 H 0.16 7.01 6.51 -2.91 -0.02 7.00 14 20 H 0.17 4.82 8.06 -2.91 -0.02 4.79 14 Total: -1.00 -58.29 220.68 5.21 -53.08 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.41 Total: 6.76 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 2.95 Total: -6.92 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.97 Total: -56.02 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.09 Total: -35.58 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.06 Total: 41.63 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.16 Total: -2.95 kcal Total: -58.29 5.21 -53.08 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034382010.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.137 kcal (2) G-P(sol) polarization free energy of solvation -58.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds