Wall clock time and date at job start Mon Mar 30 2020 03:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99919 * 2 1 4 4 C 1.50706 * 109.46577 * 293.95021 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72326 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47487 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 C 1.39977 * 110.99560 * 123.94675 * 2 1 3 13 13 N 1.31232 * 123.73654 * 235.74975 * 12 2 1 14 14 S 1.69410 * 105.97199 * 179.89859 * 13 12 2 15 15 N 1.56229 * 97.18289 * 0.33750 * 14 13 12 16 16 C 1.30011 * 109.00090 * 359.80776 * 15 14 13 17 17 Cl 1.73601 * 122.34224 * 179.97438 * 16 15 14 18 18 H 1.08997 * 109.46955 * 60.00491 * 1 2 3 19 19 H 1.09001 * 109.46689 * 180.02562 * 1 2 3 20 20 H 1.08992 * 109.47393 * 300.00487 * 1 2 3 21 21 H 1.09000 * 109.47263 * 173.95221 * 3 2 1 22 22 H 1.09001 * 109.47582 * 53.94500 * 3 2 1 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0470 -1.2986 5 1 1.0782 1.5097 -2.0505 6 6 2.0277 3.3490 -1.5290 7 7 2.7137 4.0012 -0.6159 8 14 1.5827 4.1867 -3.1383 9 1 0.8147 3.2443 -3.9911 10 1 0.7561 5.3883 -2.8589 11 1 2.8242 4.5932 -3.8446 12 6 1.9706 -0.7298 1.0841 13 7 2.8052 -0.2385 1.9697 14 16 3.1094 -1.4914 3.0687 15 7 2.2059 -2.5702 2.3901 16 6 1.6458 -2.0520 1.3375 17 17 0.5667 -2.9545 0.3202 18 1 -0.3633 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 3.0798 1.3445 0.1083 22 1 1.5611 1.9275 0.8308 23 1 2.9888 4.9170 -0.7783 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037371973.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:15 Heat of formation + Delta-G solvation = 44.133482 kcal Electronic energy + Delta-G solvation = -12215.249113 eV Core-core repulsion = 9830.248557 eV Total energy + Delta-G solvation = -2385.000557 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 233.008 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.81154 -38.11875 -37.78880 -34.79905 -33.63361 -29.80389 -27.45277 -26.64018 -23.82475 -21.42973 -20.27964 -18.57049 -17.78295 -17.15368 -16.80715 -16.33773 -15.49243 -15.28420 -14.20721 -13.63055 -13.51434 -13.35817 -12.95028 -12.82481 -12.68885 -12.42383 -12.29352 -12.07360 -11.99447 -11.49616 -11.29881 -10.66046 -10.40801 -9.19175 -8.22535 -6.34771 -0.72153 -0.29367 0.28718 0.83099 1.38266 1.44669 1.45727 1.59080 2.36185 2.62123 3.11624 3.49254 3.99217 4.33158 4.48374 4.84754 4.93023 5.15256 5.21327 5.57130 5.85587 5.95509 6.25590 6.79010 7.34895 8.89194 Molecular weight = 233.01amu Principal moments of inertia in cm(-1) A = 0.038027 B = 0.007817 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.150055 B = 3581.286563 C = 4212.190971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.445 5.445 3 C 0.219 3.781 4 C -0.533 4.533 5 H 0.076 0.924 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.975 3.025 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.282 1.282 12 C 0.274 3.726 13 N -0.553 5.553 14 S 0.607 5.393 15 N -0.516 5.516 16 C 0.088 3.912 17 Cl 0.043 6.957 18 H 0.094 0.906 19 H 0.098 0.902 20 H 0.031 0.969 21 H 0.013 0.987 22 H -0.017 1.017 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 -11.512 4.228 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.166 5.166 3 C 0.094 3.906 4 C -0.571 4.571 5 H 0.094 0.906 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.208 1.208 12 C 0.004 3.996 13 N -0.394 5.394 14 S 0.644 5.356 15 N -0.359 5.359 16 C -0.122 4.122 17 Cl 0.070 6.930 18 H 0.112 0.888 19 H 0.116 0.884 20 H 0.050 0.950 21 H 0.031 0.969 22 H 0.001 0.999 23 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.390 -11.635 5.432 13.061 hybrid contribution -1.082 0.875 -1.398 1.973 sum -3.472 -10.760 4.034 12.004 Atomic orbital electron populations 1.22765 0.82372 1.04189 1.02871 1.59540 1.10746 1.17394 1.28969 1.19434 0.94631 0.80205 0.96304 1.21466 1.36084 0.97708 1.01843 0.90583 1.25929 0.94663 0.97949 1.00814 1.70121 1.38665 1.11971 1.36235 0.85253 0.77999 0.78272 0.78602 1.18073 1.20385 1.20780 1.21328 0.95218 0.92369 0.90641 1.77239 1.24520 1.27787 1.09862 1.81931 1.37387 0.89030 1.27211 1.71421 1.15192 1.37119 1.12148 1.22263 1.03443 0.90604 0.95933 1.98366 1.58760 1.72684 1.63173 0.88754 0.88354 0.95045 0.96914 0.99928 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.87 9.06 127.69 1.16 2.03 14 2 N -0.45 -19.24 4.75 -741.53 -3.52 -22.76 14 3 C 0.22 11.62 4.14 85.56 0.35 11.97 14 4 C -0.53 -29.03 8.51 25.60 0.22 -28.81 14 5 H 0.08 3.93 7.11 -2.91 -0.02 3.91 14 6 C 0.01 0.30 5.46 84.66 0.46 0.76 14 7 N -0.93 -55.20 13.29 21.45 0.28 -54.91 14 8 Si 0.97 42.74 29.54 68.60 2.03 44.77 14 9 H -0.26 -10.61 7.11 99.48 0.71 -9.91 14 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 14 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 14 12 C 0.27 10.83 6.36 132.92 0.85 11.67 14 13 N -0.55 -22.25 10.90 -61.99 -0.68 -22.92 14 14 S 0.61 17.49 24.22 -56.49 -1.37 16.12 14 15 N -0.52 -15.92 11.40 -82.21 -0.94 -16.85 14 16 C 0.09 2.93 7.11 85.02 0.60 3.54 14 17 Cl 0.04 1.19 26.10 -2.72 -0.07 1.11 14 18 H 0.09 3.40 6.86 -2.39 -0.02 3.38 14 19 H 0.10 2.91 4.81 -2.39 -0.01 2.90 14 20 H 0.03 1.11 8.14 -2.39 -0.02 1.09 14 21 H 0.01 0.75 7.67 -2.39 -0.02 0.74 14 22 H -0.02 -0.99 8.12 -2.39 -0.02 -1.01 14 23 H 0.27 14.77 8.31 -92.71 -0.77 14.00 14 Total: -1.00 -62.53 233.18 0.62 -61.91 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: 1.24 Total: -7.62 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 3.64 Total: 1.16 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -4.85 Total: -117.45 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 17.49 SS G_CDS: -1.37 Total: 16.12 kcal Atomic # 17 Polarization: 1.19 SS G_CDS: -0.07 Total: 1.11 kcal Total: -62.53 0.62 -61.91 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037371973.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.041 kcal (2) G-P(sol) polarization free energy of solvation -62.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds