Wall clock time and date at job start Mon Mar 30 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29467 * 1 3 3 Si 1.86803 * 120.00250 * 2 1 4 4 H 1.48494 * 109.47228 * 180.27514 * 3 2 1 5 5 H 1.48506 * 109.47130 * 300.27702 * 3 2 1 6 6 H 1.48507 * 109.46925 * 60.27185 * 3 2 1 7 7 C 1.46466 * 119.99982 * 180.27743 * 2 1 3 8 8 H 1.07999 * 120.00107 * 179.72682 * 7 2 1 9 9 N 1.33705 * 119.99779 * 359.72261 * 7 2 1 10 10 N 1.39875 * 125.53057 * 0.02562 * 9 7 2 11 11 C 1.30248 * 110.15184 * 179.97438 * 10 9 7 12 12 C 1.46470 * 107.94704 * 0.02562 * 11 10 9 13 13 C 1.39611 * 133.86113 * 180.02562 * 12 11 10 14 14 C 1.37865 * 119.66849 * 179.97438 * 13 12 11 15 15 N 1.48017 * 119.79773 * 179.97438 * 14 13 12 16 16 O 1.31708 * 119.99754 * 0.02562 * 15 14 13 17 17 O 1.31693 * 120.00276 * 179.97438 * 15 14 13 18 18 C 1.38634 * 120.40493 * 359.97438 * 14 13 12 19 19 C 1.38097 * 120.57600 * 0.02562 * 18 14 13 20 20 C 1.38341 * 125.52993 * 179.71745 * 9 7 2 21 21 H 0.97000 * 119.99512 * 359.72693 * 1 2 3 22 22 H 1.07999 * 126.02446 * 180.02562 * 11 10 9 23 23 H 1.07997 * 120.16499 * 0.02562 * 13 12 11 24 24 H 1.07997 * 119.71184 * 180.02562 * 18 14 13 25 25 H 1.08004 * 120.05443 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 3.6887 1.3464 -0.0067 5 1 1.8650 2.3994 -1.2091 6 1 1.8750 2.3936 1.2159 7 6 2.0270 -1.2684 -0.0061 8 1 3.1070 -1.2684 -0.0106 9 7 1.3584 -2.4263 -0.0061 10 7 -0.0338 -2.5611 -0.0011 11 6 -0.3626 -3.8214 -0.0032 12 6 0.8717 -4.6099 -0.0094 13 6 1.1451 -5.9789 -0.0143 14 6 2.4534 -6.4136 -0.0202 15 7 2.7465 -7.8644 -0.0248 16 8 1.7588 -8.7358 -0.0237 17 8 3.9947 -8.2841 -0.0310 18 6 3.4962 -5.5001 -0.0219 19 6 3.2412 -4.1429 -0.0172 20 6 1.9314 -3.6855 -0.0171 21 1 -0.4849 0.8401 0.0040 22 1 -1.3681 -4.2155 -0.0008 23 1 0.3357 -6.6939 -0.0142 24 1 4.5169 -5.8530 -0.0270 25 1 4.0600 -3.4386 -0.0190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038812275.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:02 Heat of formation + Delta-G solvation = 92.837407 kcal Electronic energy + Delta-G solvation = -15223.845919 eV Core-core repulsion = 12400.637302 eV Total energy + Delta-G solvation = -2823.208618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.14263 -39.85465 -37.69422 -35.81398 -35.09214 -33.79557 -31.49138 -30.96482 -27.67487 -26.29380 -23.98730 -22.77628 -22.57231 -19.84031 -19.09806 -18.71214 -18.16958 -16.86844 -16.67885 -16.37591 -15.91409 -15.46227 -15.18573 -14.54048 -14.19393 -13.79334 -13.28691 -13.12555 -12.78208 -12.27556 -12.08800 -12.02486 -11.84195 -11.75148 -11.61401 -11.41242 -11.09881 -9.74375 -9.59540 -9.03411 -6.20100 -1.53905 0.13363 0.53325 0.62083 1.34172 1.37223 1.56509 1.81897 1.89864 2.21822 2.48269 2.83003 3.55941 3.74417 3.84161 4.16279 4.29347 4.38614 4.55462 4.78450 4.79562 5.05509 5.09217 5.30164 5.41604 5.67444 5.81104 6.04668 6.14858 6.91228 7.04766 7.91004 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.052417 B = 0.006396 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.046456 B = 4376.965197 C = 4901.167888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.015 3.985 3 Si 1.022 2.978 4 H -0.240 1.240 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.312 4.312 8 H 0.157 0.843 9 N -0.134 5.134 10 N -0.275 5.275 11 C 0.059 3.941 12 C -0.226 4.226 13 C 0.082 3.918 14 C -0.093 4.093 15 N 0.030 4.970 16 O -0.296 6.296 17 O -0.296 6.296 18 C -0.100 4.100 19 C -0.073 4.073 20 C -0.038 4.038 21 H 0.307 0.693 22 H 0.225 0.775 23 H 0.158 0.842 24 H 0.146 0.854 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 6.083 0.020 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.211 4.211 3 Si 0.838 3.162 4 H -0.162 1.162 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.450 4.450 8 H 0.174 0.826 9 N 0.108 4.892 10 N -0.091 5.091 11 C -0.128 4.128 12 C -0.236 4.236 13 C 0.058 3.942 14 C -0.192 4.192 15 N 0.463 4.537 16 O -0.458 6.458 17 O -0.458 6.458 18 C -0.122 4.122 19 C -0.095 4.095 20 C -0.164 4.164 21 H 0.120 0.880 22 H 0.241 0.759 23 H 0.175 0.825 24 H 0.164 0.836 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.013 7.719 0.026 7.719 hybrid contribution 0.405 -0.851 -0.004 0.942 sum 0.392 6.868 0.022 6.879 Atomic orbital electron populations 1.69236 1.09831 1.32833 1.24720 1.28496 0.96115 1.03811 0.92713 0.84476 0.79580 0.72840 0.79302 1.16222 1.18639 1.18618 1.22309 0.94181 0.81010 1.47485 0.82609 1.44312 1.03406 1.04369 1.37121 1.77656 0.90605 1.18481 1.22386 1.25931 0.99062 0.89258 0.98578 1.19319 0.93559 0.92117 1.18642 1.20406 0.94362 0.94370 0.85079 1.19789 0.96484 0.75599 1.27376 1.50287 1.01625 1.05088 0.96749 1.96127 1.35401 1.51527 1.62773 1.96128 1.00336 1.86411 1.62908 1.20203 0.98229 0.90799 1.03016 1.19732 0.93295 0.93850 1.02667 1.18850 0.95615 0.84897 1.17023 0.87999 0.75872 0.82467 0.83583 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -31.11 11.83 23.19 0.27 -30.83 15 2 C 0.01 0.56 5.68 87.19 0.50 1.06 15 3 Si 1.02 27.62 29.64 68.60 2.03 29.66 15 4 H -0.24 -6.01 7.11 99.48 0.71 -5.30 15 5 H -0.26 -6.96 7.11 99.48 0.71 -6.25 15 6 H -0.26 -6.95 7.11 99.48 0.71 -6.24 15 7 C -0.31 -12.88 10.35 86.55 0.90 -11.99 15 8 H 0.16 5.61 7.80 -2.91 -0.02 5.58 15 9 N -0.13 -5.94 3.65 -179.87 -0.66 -6.60 15 10 N -0.27 -12.19 10.25 -52.69 -0.54 -12.73 15 11 C 0.06 2.21 12.29 87.07 1.07 3.28 15 12 C -0.23 -8.84 6.36 -20.22 -0.13 -8.97 15 13 C 0.08 3.06 9.63 22.51 0.22 3.28 15 14 C -0.09 -3.80 6.88 36.38 0.25 -3.55 15 15 N 0.03 1.36 4.98 -46.45 -0.23 1.13 15 16 O -0.30 -13.71 19.13 3.50 0.07 -13.64 15 17 O -0.30 -13.90 19.13 3.53 0.07 -13.83 15 18 C -0.10 -3.72 9.56 22.33 0.21 -3.51 15 19 C -0.07 -2.67 9.94 22.36 0.22 -2.45 15 20 C -0.04 -1.59 6.79 38.82 0.26 -1.32 15 21 H 0.31 11.19 8.27 -92.71 -0.77 10.42 15 22 H 0.23 6.08 8.06 -2.91 -0.02 6.05 15 23 H 0.16 5.17 7.56 -2.91 -0.02 5.15 15 24 H 0.15 5.04 7.55 -2.91 -0.02 5.02 15 25 H 0.15 4.59 7.95 -2.91 -0.02 4.57 15 Total: -1.00 -57.79 244.62 5.76 -52.04 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.24 Total: 19.00 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 3.50 Total: -24.19 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -1.15 Total: -49.03 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: 0.13 Total: -27.48 kcal Atomic # 14 Polarization: 27.62 SS G_CDS: 2.03 Total: 29.66 kcal Total: -57.79 5.76 -52.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038812275.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.873 kcal (2) G-P(sol) polarization free energy of solvation -57.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds