Wall clock time and date at job start Mon Mar 30 2020 03:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31240 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48500 * 109.47256 * 240.00058 * 3 2 1 5 5 H 1.48501 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47168 * 120.00108 * 3 2 1 7 7 C 1.39145 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99309 * 171.18118 * 7 2 1 9 9 N 1.36703 * 119.99869 * 351.18621 * 7 2 1 10 10 C 1.35895 * 119.21167 * 319.53231 * 9 7 2 11 11 C 1.34882 * 122.46814 * 180.02562 * 10 9 7 12 12 C 1.41631 * 120.10662 * 0.02562 * 11 10 9 13 13 O 1.22002 * 121.07973 * 180.02562 * 12 11 10 14 14 C 1.47379 * 117.84374 * 359.97438 * 12 11 10 15 15 C 1.39491 * 121.41241 * 179.97438 * 14 12 11 16 16 C 1.37756 * 119.61940 * 180.02562 * 15 14 12 17 17 C 1.38763 * 120.41310 * 0.02562 * 16 15 14 18 18 C 1.38030 * 120.66797 * 359.97438 * 17 16 15 19 19 F 1.35105 * 120.10139 * 180.02562 * 18 17 16 20 20 C 1.37986 * 119.21327 * 139.49218 * 9 7 2 21 21 H 0.96997 * 119.99878 * 359.97438 * 1 2 3 22 22 H 1.07998 * 118.76449 * 359.97438 * 10 9 7 23 23 H 1.07998 * 119.94731 * 179.97438 * 11 10 9 24 24 H 1.08000 * 120.18458 * 0.04720 * 15 14 12 25 25 H 1.07996 * 119.79196 * 179.72062 * 16 15 14 26 26 H 1.08003 * 119.66336 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 3.1002 1.6964 -1.2125 5 1 1.2814 2.7465 0.0006 6 1 3.1002 1.6964 1.2125 7 6 2.0081 -1.2050 -0.0005 8 1 3.0786 -1.2104 -0.1439 9 7 1.3366 -2.3820 0.1803 10 6 0.3362 -2.4405 1.0982 11 6 -0.3685 -3.5669 1.3303 12 6 -0.0775 -4.7489 0.6063 13 8 -0.7039 -5.7774 0.8017 14 6 1.0058 -4.6958 -0.3915 15 6 1.3550 -5.8160 -1.1458 16 6 2.3741 -5.7250 -2.0682 17 6 3.0530 -4.5284 -2.2492 18 6 2.7194 -3.4110 -1.5107 19 9 3.3876 -2.2516 -1.6967 20 6 1.6903 -3.4819 -0.5740 21 1 -0.4850 0.8400 0.0004 22 1 0.0969 -1.5519 1.6635 23 1 -1.1554 -3.5678 2.0701 24 1 0.8290 -6.7491 -1.0077 25 1 2.6498 -6.5918 -2.6505 26 1 3.8498 -4.4705 -2.9760 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040174203.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:21 Heat of formation + Delta-G solvation = -49.325849 kcal Electronic energy + Delta-G solvation = -15953.404992 eV Core-core repulsion = 13104.111752 eV Total energy + Delta-G solvation = -2849.293240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.76847 -41.76981 -38.89419 -38.34504 -34.81605 -32.81049 -31.53490 -30.70116 -27.03361 -24.86722 -24.68645 -22.77509 -20.37221 -19.42688 -18.83069 -17.55180 -17.43377 -16.65073 -16.47817 -16.13628 -15.84028 -15.58292 -15.42436 -14.51802 -14.38649 -13.92016 -13.73448 -13.50742 -13.05882 -12.92342 -12.71194 -12.55133 -12.13848 -11.80558 -11.06613 -10.32635 -10.08205 -9.86428 -8.86657 -8.54328 -6.49019 -0.20718 0.03728 0.97612 1.39028 1.47446 1.51613 2.05868 2.17981 2.53625 2.67017 3.16632 3.27639 3.62105 3.94942 3.99889 4.24486 4.33152 4.45737 4.87740 4.94406 5.09341 5.16716 5.19700 5.25040 5.31434 5.64612 5.75657 5.97450 6.38462 6.78291 6.98150 7.19672 8.32944 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.011495 C = 0.008387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.994620 B = 2435.283761 C = 3337.564047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.016 3.984 3 Si 1.006 2.994 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.399 4.399 8 H 0.127 0.873 9 N -0.313 5.313 10 C 0.213 3.787 11 C -0.391 4.391 12 C 0.391 3.609 13 O -0.586 6.586 14 C -0.213 4.213 15 C -0.055 4.055 16 C -0.132 4.132 17 C -0.094 4.094 18 C 0.040 3.960 19 F -0.132 7.132 20 C 0.117 3.883 21 H 0.290 0.710 22 H 0.154 0.846 23 H 0.138 0.862 24 H 0.142 0.858 25 H 0.179 0.821 26 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -1.524 -3.792 8.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.192 4.192 3 Si 0.826 3.174 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.525 4.525 8 H 0.144 0.856 9 N 0.016 4.984 10 C 0.076 3.924 11 C -0.416 4.416 12 C 0.289 3.711 13 O -0.480 6.480 14 C -0.217 4.217 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.114 4.114 18 C 0.019 3.981 19 F -0.111 7.111 20 C 0.010 3.990 21 H 0.100 0.900 22 H 0.171 0.829 23 H 0.156 0.844 24 H 0.159 0.841 25 H 0.197 0.803 26 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.786 -1.646 -3.741 7.922 hybrid contribution -0.186 1.262 0.226 1.296 sum 6.600 -0.383 -3.516 7.488 Atomic orbital electron populations 1.69828 1.07884 1.30927 1.42828 1.26621 0.96306 1.03866 0.92384 0.84795 0.77936 0.74569 0.80117 1.18687 1.19677 1.17901 1.20719 0.94819 0.81795 1.55143 0.85587 1.39647 1.25927 1.08450 1.24398 1.21759 0.86189 0.97898 0.86525 1.21728 1.11474 0.94676 1.13681 1.18542 0.82218 0.88311 0.82027 1.90540 1.53291 1.35011 1.69153 1.20433 1.02256 0.94000 1.05060 1.21265 0.96134 0.96774 0.93151 1.21220 0.95937 0.98414 0.99495 1.21486 1.00947 0.90375 0.98558 1.17402 0.95639 0.84169 1.00939 1.91426 1.78607 1.46816 1.94228 1.18869 0.97155 0.89184 0.93806 0.89954 0.82862 0.84389 0.84072 0.80348 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.66 11.51 21.69 0.25 -43.41 15 2 C 0.02 0.73 5.09 85.00 0.43 1.16 15 3 Si 1.01 36.33 29.56 68.60 2.03 38.35 15 4 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 6 H -0.25 -8.77 7.11 99.48 0.71 -8.06 15 7 C -0.40 -19.38 7.84 84.15 0.66 -18.72 15 8 H 0.13 5.94 5.84 -2.91 -0.02 5.92 15 9 N -0.31 -15.53 2.76 -343.43 -0.95 -16.47 15 10 C 0.21 10.38 8.86 83.29 0.74 11.11 15 11 C -0.39 -18.87 9.96 22.34 0.22 -18.65 15 12 C 0.39 19.59 6.97 25.52 0.18 19.77 15 13 O -0.59 -31.26 17.35 -5.32 -0.09 -31.36 15 14 C -0.21 -9.61 5.89 -20.01 -0.12 -9.72 15 15 C -0.05 -1.96 9.66 22.46 0.22 -1.74 15 16 C -0.13 -3.62 10.02 22.28 0.22 -3.40 15 17 C -0.09 -2.78 9.99 22.35 0.22 -2.55 15 18 C 0.04 1.59 7.16 22.48 0.16 1.75 15 19 F -0.13 -5.45 13.61 44.97 0.61 -4.84 15 20 C 0.12 5.40 6.50 39.00 0.25 5.65 15 21 H 0.29 13.29 8.30 -92.71 -0.77 12.52 15 22 H 0.15 7.34 6.70 -2.91 -0.02 7.32 15 23 H 0.14 6.20 8.06 -2.91 -0.02 6.18 15 24 H 0.14 4.77 7.79 -2.91 -0.02 4.75 15 25 H 0.18 3.12 8.06 -2.91 -0.02 3.10 15 26 H 0.17 3.64 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -61.45 236.86 6.26 -55.19 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.22 Total: 17.88 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 3.19 Total: -15.34 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.70 Total: -59.89 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.09 Total: -31.36 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.61 Total: -4.84 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.35 kcal Total: -61.45 6.26 -55.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040174203.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.864 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds