Wall clock time and date at job start Mon Mar 30 2020 03:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86799 * 119.99627 * 2 1 4 4 H 1.48504 * 109.47113 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47275 * 120.00017 * 3 2 1 6 6 H 1.48503 * 109.47221 * 240.00124 * 3 2 1 7 7 C 1.39023 * 120.00360 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 204.91876 * 7 2 1 9 9 N 1.36990 * 120.00147 * 24.92202 * 7 2 1 10 10 C 1.36641 * 118.85302 * 30.69166 * 9 7 2 11 11 C 1.34341 * 122.37047 * 179.97438 * 10 9 7 12 12 C 1.46447 * 119.39333 * 0.02562 * 11 10 9 13 13 C 1.39436 * 121.98691 * 179.97438 * 12 11 10 14 14 C 1.38090 * 119.37578 * 180.02562 * 13 12 11 15 15 F 1.35097 * 119.66565 * 180.02562 * 14 13 12 16 16 C 1.39148 * 120.67496 * 0.02562 * 14 13 12 17 17 C 1.36687 * 120.86019 * 359.97438 * 16 14 13 18 18 C 1.39511 * 119.68775 * 0.02562 * 17 16 14 19 19 C 1.34763 * 118.85506 * 210.43263 * 9 7 2 20 20 O 1.21784 * 120.35366 * 359.97123 * 19 9 7 21 21 H 0.97002 * 119.99524 * 185.78622 * 1 2 3 22 22 H 1.08001 * 118.81408 * 0.02562 * 10 9 7 23 23 H 1.08007 * 120.30429 * 180.02562 * 11 10 9 24 24 H 1.07997 * 120.31638 * 0.02562 * 13 12 11 25 25 H 1.08003 * 119.56791 * 179.97438 * 16 14 13 26 26 H 1.08004 * 120.15582 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 1.2818 2.7465 0.0006 5 1 3.1006 1.6965 1.2125 6 1 3.1006 1.6965 -1.2125 7 6 2.0082 -1.2039 -0.0005 8 1 3.0128 -1.2476 0.3935 9 7 1.4190 -2.3349 -0.5010 10 6 0.5085 -2.2117 -1.5123 11 6 -0.1110 -3.2728 -2.0556 12 6 0.1908 -4.6155 -1.5547 13 6 -0.4206 -5.7539 -2.0784 14 6 -0.0961 -6.9941 -1.5649 15 9 -0.6845 -8.1010 -2.0684 16 6 0.8309 -7.1152 -0.5343 17 6 1.4413 -6.0118 -0.0070 18 6 1.1325 -4.7463 -0.5066 19 6 1.7615 -3.5306 0.0178 20 8 2.5815 -3.5999 0.9155 21 1 -0.4849 -0.8358 0.0847 22 1 0.2792 -1.2259 -1.8891 23 1 -0.8251 -3.1369 -2.8544 24 1 -1.1412 -5.6667 -2.8781 25 1 1.0710 -8.0939 -0.1458 26 1 2.1588 -6.1189 0.7931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057793484.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:08 Heat of formation + Delta-G solvation = -59.643258 kcal Electronic energy + Delta-G solvation = -15516.702737 eV Core-core repulsion = 12666.962100 eV Total energy + Delta-G solvation = -2849.740637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.97079 -42.08337 -39.25529 -37.96319 -35.03363 -33.06872 -31.82309 -30.28938 -27.25814 -24.92124 -24.39318 -22.81640 -21.00210 -19.39334 -19.05203 -17.86699 -17.02057 -16.79001 -16.68755 -16.48842 -16.19687 -15.57523 -15.05625 -14.92534 -14.26641 -14.04387 -13.57225 -13.44431 -13.33339 -12.89003 -12.44240 -12.22890 -11.98928 -11.90786 -11.12399 -10.86169 -10.57518 -9.88132 -9.33461 -8.70596 -6.50975 -0.32815 -0.16479 1.19623 1.47372 1.52502 1.82338 1.89989 2.16988 2.52693 2.67162 3.10062 3.11553 3.61991 3.65336 3.80710 4.03636 4.24713 4.28782 4.73927 4.83987 4.86966 4.97918 5.04983 5.34430 5.44966 5.51067 5.66179 5.81477 6.25746 6.38361 6.91669 7.37711 8.09731 Molecular weight = 233.06amu Principal moments of inertia in cm(-1) A = 0.052946 B = 0.007149 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.710568 B = 3915.548508 C = 4331.013317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C -0.003 4.003 3 Si 1.131 2.869 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.464 4.464 8 H 0.082 0.918 9 N -0.357 5.357 10 C 0.104 3.896 11 C -0.234 4.234 12 C 0.020 3.980 13 C -0.155 4.155 14 C 0.123 3.877 15 F -0.134 7.134 16 C -0.172 4.172 17 C -0.033 4.033 18 C -0.192 4.192 19 C 0.468 3.532 20 O -0.602 6.602 21 H 0.270 0.730 22 H 0.150 0.850 23 H 0.178 0.822 24 H 0.171 0.829 25 H 0.167 0.833 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.607 -7.212 -6.267 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.210 4.210 3 Si 0.947 3.053 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.590 4.590 8 H 0.100 0.900 9 N -0.054 5.054 10 C -0.023 4.023 11 C -0.257 4.257 12 C 0.017 3.983 13 C -0.174 4.174 14 C 0.103 3.897 15 F -0.112 7.112 16 C -0.191 4.191 17 C -0.052 4.052 18 C -0.196 4.196 19 C 0.269 3.731 20 O -0.490 6.490 21 H 0.081 0.919 22 H 0.168 0.832 23 H 0.195 0.805 24 H 0.188 0.812 25 H 0.184 0.816 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.356 -5.622 -5.796 8.412 hybrid contribution 0.165 -1.804 0.437 1.864 sum -2.191 -7.427 -5.360 9.417 Atomic orbital electron populations 1.70854 1.07588 1.31190 1.39046 1.28273 0.95945 1.05607 0.91146 0.82761 0.74327 0.69426 0.78761 1.18994 1.19761 1.18273 1.20844 1.02071 0.87823 1.48312 0.90044 1.41343 1.31493 1.07374 1.25229 1.21880 0.90970 1.01371 0.88034 1.21561 1.08353 0.88447 1.07308 1.18970 0.92650 0.94415 0.92296 1.21151 1.03621 0.89120 1.03527 1.17800 0.94495 0.82542 0.94835 1.91500 1.82321 1.51215 1.86168 1.20926 0.99101 1.00503 0.98523 1.20638 0.97046 0.89813 0.97672 1.20116 1.03713 0.93670 1.02144 1.18812 0.85713 0.84675 0.83863 1.90628 1.38025 1.87029 1.33310 0.91877 0.83229 0.80514 0.81178 0.81594 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.85 12.40 21.67 0.27 -44.59 15 2 C 0.00 -0.14 4.72 84.96 0.40 0.26 15 3 Si 1.13 43.61 29.99 68.60 2.06 45.67 15 4 H -0.27 -9.84 7.11 99.48 0.71 -9.13 15 5 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 6 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 7 C -0.46 -25.88 8.88 84.08 0.75 -25.14 15 8 H 0.08 4.84 7.59 -2.91 -0.02 4.82 15 9 N -0.36 -18.86 2.61 -471.18 -1.23 -20.09 15 10 C 0.10 4.62 8.18 83.05 0.68 5.30 15 11 C -0.23 -8.48 10.03 23.52 0.24 -8.25 15 12 C 0.02 0.72 5.89 -20.05 -0.12 0.61 15 13 C -0.16 -4.47 9.85 22.52 0.22 -4.25 15 14 C 0.12 3.43 7.29 22.45 0.16 3.60 15 15 F -0.13 -3.39 17.25 44.97 0.78 -2.62 15 16 C -0.17 -4.87 9.94 22.13 0.22 -4.65 15 17 C -0.03 -1.18 9.61 22.21 0.21 -0.96 15 18 C -0.19 -8.27 5.90 -19.99 -0.12 -8.39 15 19 C 0.47 24.98 7.56 86.42 0.65 25.63 15 20 O -0.60 -35.81 16.24 -4.62 -0.07 -35.89 15 21 H 0.27 14.57 6.99 -92.71 -0.65 13.92 15 22 H 0.15 6.64 6.46 -2.91 -0.02 6.62 15 23 H 0.18 4.81 8.06 -2.91 -0.02 4.79 15 24 H 0.17 3.72 8.06 -2.91 -0.02 3.69 15 25 H 0.17 3.54 8.06 -2.91 -0.02 3.51 15 26 H 0.14 4.85 7.78 -2.91 -0.02 4.83 15 Total: -1.00 -65.13 240.65 6.43 -58.69 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.34 Total: 15.06 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 3.30 Total: -16.24 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.96 Total: -64.67 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.07 Total: -35.89 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.78 Total: -2.62 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.06 Total: 45.67 kcal Total: -65.13 6.43 -58.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057793484.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.952 kcal (2) G-P(sol) polarization free energy of solvation -65.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds