Wall clock time and date at job start Mon Mar 30 2020 03:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48505 * 109.46994 * 270.00355 * 3 2 1 5 5 H 1.48503 * 109.46803 * 29.99579 * 3 2 1 6 6 H 1.48492 * 109.47316 * 149.99924 * 3 2 1 7 7 C 1.39703 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.41207 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.38083 * 122.77293 * 180.02562 * 9 7 2 11 11 S 1.71008 * 108.85515 * 179.97438 * 10 9 7 12 12 C 1.75918 * 90.75425 * 359.97438 * 11 10 9 13 13 C 1.47853 * 125.05662 * 179.97438 * 12 11 10 14 14 N 1.32753 * 119.22942 * 179.74999 * 13 12 11 15 15 C 1.32126 * 120.73366 * 179.76187 * 14 13 12 16 16 C 1.38763 * 119.20532 * 0.50966 * 15 14 13 17 17 C 1.38760 * 118.58343 * 359.75108 * 16 15 14 18 18 N 1.32128 * 119.20764 * 359.97438 * 17 16 15 19 19 N 1.29795 * 109.87737 * 0.02562 * 12 11 10 20 20 H 0.97004 * 120.00052 * 0.02562 * 1 2 3 21 21 H 1.07998 * 125.57504 * 0.24425 * 10 9 7 22 22 H 1.07994 * 120.39480 * 180.28490 * 15 14 13 23 23 H 1.07995 * 120.70715 * 179.76765 * 16 15 14 24 24 H 1.07998 * 120.39687 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5417 1.4402 0.7000 7 6 2.0087 -1.2099 -0.0005 8 1 3.0886 -1.2099 -0.0001 9 6 1.3027 -2.4328 -0.0005 10 6 1.9345 -3.6606 -0.0005 11 16 0.7483 -4.8925 0.0002 12 6 -0.5348 -3.6891 0.0012 13 6 -1.9822 -3.9910 0.0017 14 7 -2.8534 -2.9892 0.0076 15 6 -4.1534 -3.2249 0.0034 16 6 -4.6036 -4.5375 0.0036 17 6 -3.6663 -5.5608 0.0029 18 7 -2.3804 -5.2573 0.0015 19 7 -0.0218 -2.4969 0.0004 20 1 -0.4850 0.8401 -0.0004 21 1 3.0030 -3.8174 0.0032 22 1 -4.8572 -2.4059 0.0036 23 1 -5.6608 -4.7580 0.0041 24 1 -3.9842 -6.5929 0.0034 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798184.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:25 Heat of formation + Delta-G solvation = 95.070786 kcal Electronic energy + Delta-G solvation = -13147.327564 eV Core-core repulsion = 10766.968664 eV Total energy + Delta-G solvation = -2380.358900 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.50487 -37.76891 -33.38905 -33.29737 -32.03042 -29.02817 -25.69893 -25.05138 -24.13390 -21.80649 -19.25346 -17.87681 -16.72280 -16.47694 -15.38708 -15.16933 -14.68637 -14.59137 -13.72470 -13.27463 -12.85871 -12.63684 -11.74174 -11.51829 -11.19684 -10.74970 -10.55675 -10.53818 -10.41121 -9.70149 -9.65727 -9.13308 -8.80801 -8.09109 -7.95515 -7.35316 -6.46750 -4.34548 0.85305 1.44827 2.35836 2.71448 3.08431 3.13304 3.17276 3.60875 4.03299 4.06640 4.10771 4.50365 4.66550 4.80646 5.17325 5.34951 5.51563 5.56135 5.97050 6.49191 6.70222 7.01163 7.23409 7.31116 7.44521 8.17702 8.47368 8.52712 8.88898 9.55234 10.38961 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.008466 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.034525 B = 3306.627552 C = 4170.819352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.431 4.431 8 H 0.086 0.914 9 C 0.219 3.781 10 C -0.443 4.443 11 S 0.053 5.947 12 C 0.062 3.938 13 C 0.413 3.587 14 N -0.470 5.470 15 C 0.147 3.853 16 C -0.249 4.249 17 C 0.147 3.853 18 N -0.513 5.513 19 N -0.347 5.347 20 H 0.275 0.725 21 H 0.145 0.855 22 H 0.166 0.834 23 H 0.143 0.857 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 -5.516 0.001 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.155 4.155 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.466 4.466 8 H 0.104 0.896 9 C 0.093 3.907 10 C -0.585 4.585 11 S 0.301 5.699 12 C -0.216 4.216 13 C 0.147 3.853 14 N -0.184 5.184 15 C -0.021 4.021 16 C -0.272 4.272 17 C -0.020 4.020 18 N -0.228 5.228 19 N -0.064 5.064 20 H 0.086 0.914 21 H 0.163 0.837 22 H 0.183 0.817 23 H 0.161 0.839 24 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.439 -5.756 0.011 9.406 hybrid contribution -0.127 1.408 -0.007 1.414 sum -7.566 -4.348 0.004 8.726 Atomic orbital electron populations 1.70147 1.06740 1.28102 1.31123 1.26016 0.95027 1.01047 0.93438 0.86269 0.80273 0.80808 0.79080 1.19524 1.20241 1.18659 1.18947 0.94083 0.88115 1.45446 0.89580 1.17932 0.85122 0.93355 0.94275 1.25737 1.01879 0.94752 1.36119 1.82702 0.99068 1.13610 1.74479 1.24653 0.92811 0.92110 1.12030 1.20175 0.91704 0.83758 0.89692 1.68687 1.02313 1.35998 1.11439 1.23344 0.92354 0.96079 0.90339 1.22900 1.02207 0.95563 1.06512 1.23096 0.87718 1.00213 0.90970 1.68329 1.18591 1.21280 1.14647 1.67357 1.12052 1.18623 1.08368 0.91428 0.83744 0.81671 0.83924 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.54 11.69 55.54 0.65 -19.89 14 2 C 0.07 1.80 5.49 -17.35 -0.10 1.71 14 3 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 14 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 14 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 14 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 14 7 C -0.43 -12.02 9.23 -37.91 -0.35 -12.37 14 8 H 0.09 2.25 7.84 -52.49 -0.41 1.84 14 9 C 0.22 6.23 6.46 -86.46 -0.56 5.67 14 10 C -0.44 -11.40 11.00 30.68 0.34 -11.06 14 11 S 0.05 1.22 22.89 -107.50 -2.46 -1.24 14 12 C 0.06 1.59 7.41 -14.48 -0.11 1.48 14 13 C 0.41 9.24 7.59 -156.89 -1.19 8.05 14 14 N -0.47 -10.05 10.29 -11.21 -0.12 -10.17 14 15 C 0.15 2.25 11.30 -17.23 -0.19 2.05 14 16 C -0.25 -3.04 10.17 -39.19 -0.40 -3.43 14 17 C 0.15 2.03 11.30 -17.23 -0.19 1.84 14 18 N -0.51 -9.72 10.12 -11.21 -0.11 -9.83 14 19 N -0.35 -9.91 8.35 -9.15 -0.08 -9.99 14 20 H 0.27 6.98 8.30 -40.82 -0.34 6.64 14 21 H 0.14 3.45 8.06 -52.49 -0.42 3.02 14 22 H 0.17 1.91 8.06 -52.49 -0.42 1.49 14 23 H 0.14 1.12 8.06 -52.49 -0.42 0.70 14 24 H 0.17 1.55 8.06 -52.49 -0.42 1.13 14 LS Contribution 242.55 15.07 3.66 3.66 Total: -1.00 -32.55 242.55 -7.48 -40.03 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -1.24 Total: -0.85 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.75 Total: -6.06 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.34 Total: -49.87 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.46 Total: -1.24 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -32.55 -7.48 -40.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798184.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.096 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds