Wall clock time and date at job start Mon Mar 30 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31035 * 1 3 3 Si 1.86798 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47448 * 299.99966 * 3 2 1 6 6 H 1.48497 * 109.47102 * 60.00392 * 3 2 1 7 7 C 1.39680 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00239 * 179.97438 * 7 2 1 9 9 C 1.41178 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.38050 * 122.77167 * 179.97438 * 9 7 2 11 11 S 1.70999 * 108.87560 * 179.97438 * 10 9 7 12 12 C 1.75916 * 90.76553 * 0.02562 * 11 10 9 13 13 C 1.47781 * 125.06272 * 179.97438 * 12 11 10 14 14 C 1.39714 * 120.12792 * 359.75575 * 13 12 11 15 15 N 1.31951 * 119.84821 * 180.30024 * 14 13 12 16 16 C 1.32247 * 120.10712 * 359.96850 * 15 14 13 17 17 C 1.38509 * 120.25697 * 0.02562 * 16 15 14 18 18 N 1.31954 * 120.15508 * 0.02813 * 17 16 15 19 19 N 1.29832 * 109.87390 * 0.26630 * 12 11 10 20 20 H 0.97004 * 119.99760 * 359.97438 * 1 2 3 21 21 H 1.07999 * 125.56334 * 0.02562 * 10 9 7 22 22 H 1.08005 * 120.07580 * 0.24579 * 14 13 12 23 23 H 1.07998 * 119.87021 * 179.97438 * 16 15 14 24 24 H 1.08002 * 119.92711 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.7043 1.3464 -0.0006 5 1 1.8856 2.3965 -1.2124 6 1 1.8856 2.3964 1.2125 7 6 2.0088 -1.2097 -0.0005 8 1 3.0887 -1.2097 -0.0010 9 6 1.3028 -2.4323 -0.0016 10 6 1.9344 -3.6598 -0.0027 11 16 0.7487 -4.8920 -0.0031 12 6 -0.5350 -3.6893 -0.0026 13 6 -1.9816 -3.9916 -0.0031 14 6 -2.4208 -5.3179 -0.0093 15 7 -3.7137 -5.5815 -0.0157 16 6 -4.5923 -4.5930 -0.0157 17 6 -4.1617 -3.2766 -0.0095 18 7 -2.8712 -3.0012 -0.0041 19 7 -0.0224 -2.4965 -0.0078 20 1 -0.4850 0.8401 0.0004 21 1 3.0030 -3.8164 -0.0025 22 1 -1.7038 -6.1255 -0.0097 23 1 -5.6496 -4.8131 -0.0214 24 1 -4.8839 -2.4735 -0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798192.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:18 Heat of formation + Delta-G solvation = 90.637699 kcal Electronic energy + Delta-G solvation = -13139.505744 eV Core-core repulsion = 10758.954611 eV Total energy + Delta-G solvation = -2380.551133 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.59416 -37.85829 -34.03517 -33.24404 -31.81015 -28.92261 -25.76278 -25.20939 -24.12945 -21.83194 -19.19221 -17.98021 -16.70788 -16.48525 -16.10175 -15.25492 -14.77183 -14.55708 -13.84736 -13.06145 -12.82471 -12.59959 -11.78540 -11.59205 -11.28973 -11.21547 -10.91287 -10.78282 -10.48557 -9.79247 -9.60500 -9.10805 -8.74564 -8.18769 -8.05186 -7.38634 -6.54910 -4.42770 0.74812 1.40648 2.33692 2.55395 3.03257 3.09161 3.14184 3.45309 3.97599 3.97705 4.33577 4.39090 4.58095 4.73381 5.01556 5.38998 5.44185 5.56483 5.70893 6.41700 6.70565 6.96224 7.16193 7.33420 7.55816 8.06668 8.16649 8.44655 8.80882 9.47421 10.30631 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.008381 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.675273 B = 3339.985574 C = 4201.814307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.067 3.933 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.428 4.428 8 H 0.087 0.913 9 C 0.219 3.781 10 C -0.440 4.440 11 S 0.009 5.991 12 C 0.058 3.942 13 C 0.181 3.819 14 C 0.056 3.944 15 N -0.436 5.436 16 C 0.026 3.974 17 C 0.056 3.944 18 N -0.397 5.397 19 N -0.347 5.347 20 H 0.276 0.724 21 H 0.145 0.855 22 H 0.169 0.831 23 H 0.166 0.834 24 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 -4.756 -0.007 7.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.157 4.157 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.105 0.895 9 C 0.094 3.906 10 C -0.581 4.581 11 S 0.257 5.743 12 C -0.221 4.221 13 C 0.039 3.961 14 C -0.107 4.107 15 N -0.150 5.150 16 C -0.134 4.134 17 C -0.106 4.106 18 N -0.113 5.113 19 N -0.062 5.062 20 H 0.086 0.914 21 H 0.162 0.838 22 H 0.186 0.814 23 H 0.183 0.817 24 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.491 -5.173 -0.018 8.300 hybrid contribution 0.920 1.663 0.006 1.901 sum -5.570 -3.509 -0.011 6.584 Atomic orbital electron populations 1.70155 1.06793 1.28185 1.30766 1.26038 0.95054 1.01185 0.93373 0.86191 0.80659 0.80996 0.78495 1.18452 1.19881 1.19875 1.19011 0.94209 0.88125 1.44880 0.89465 1.17980 0.85255 0.93336 0.93994 1.25489 1.01369 0.93810 1.37398 1.82409 1.00657 1.14792 1.76463 1.25229 0.93995 0.91941 1.10963 1.19913 0.91381 0.90016 0.94831 1.23631 0.93215 0.95973 0.97897 1.68379 1.02099 1.35834 1.08717 1.23739 1.00558 0.90324 0.98828 1.23879 0.93330 0.97164 0.96245 1.68743 1.01315 1.34788 1.06452 1.67424 1.12009 1.18718 1.08058 0.91360 0.83754 0.81416 0.81663 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.16 11.69 55.53 0.65 -19.51 14 2 C 0.07 1.75 5.49 -17.35 -0.10 1.65 14 3 Si 0.91 19.07 29.56 -169.99 -5.02 14.04 14 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 14 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 14 6 H -0.27 -5.63 7.11 56.52 0.40 -5.22 14 7 C -0.43 -11.70 9.23 -37.93 -0.35 -12.05 14 8 H 0.09 2.24 7.84 -52.49 -0.41 1.83 14 9 C 0.22 6.07 6.46 -86.45 -0.56 5.51 14 10 C -0.44 -10.92 10.99 30.66 0.34 -10.59 14 11 S 0.01 0.18 22.07 -107.50 -2.37 -2.19 14 12 C 0.06 1.38 7.38 -14.50 -0.11 1.28 14 13 C 0.18 3.76 6.75 -82.85 -0.56 3.20 14 14 C 0.06 0.96 10.78 -16.95 -0.18 0.78 14 15 N -0.44 -6.90 10.49 -12.70 -0.13 -7.04 14 16 C 0.03 0.35 11.22 -17.27 -0.19 0.16 14 17 C 0.06 0.85 11.22 -17.40 -0.20 0.65 14 18 N -0.40 -8.21 10.40 -9.65 -0.10 -8.31 14 19 N -0.35 -9.60 8.38 -9.16 -0.08 -9.68 14 20 H 0.28 6.87 8.30 -40.82 -0.34 6.53 14 21 H 0.14 3.35 8.06 -52.49 -0.42 2.93 14 22 H 0.17 2.58 7.27 -52.48 -0.38 2.19 14 23 H 0.17 1.49 8.06 -52.49 -0.42 1.06 14 24 H 0.17 1.89 8.06 -52.49 -0.42 1.47 14 LS Contribution 241.02 15.07 3.63 3.63 Total: -1.00 -31.28 241.02 -6.53 -37.81 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -1.20 Total: 0.65 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.90 Total: -9.40 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.34 Total: -44.54 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.37 Total: -2.19 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.28 -6.53 -37.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798192.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.445 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds