Wall clock time and date at job start Mon Mar 30 2020 03:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31035 * 1 3 3 Si 1.86798 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47448 * 299.99966 * 3 2 1 6 6 H 1.48497 * 109.47102 * 60.00392 * 3 2 1 7 7 C 1.39680 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00239 * 179.97438 * 7 2 1 9 9 C 1.41178 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.38050 * 122.77167 * 179.97438 * 9 7 2 11 11 S 1.70999 * 108.87560 * 179.97438 * 10 9 7 12 12 C 1.75916 * 90.76553 * 0.02562 * 11 10 9 13 13 C 1.47781 * 125.06272 * 179.97438 * 12 11 10 14 14 C 1.39714 * 120.12792 * 359.75575 * 13 12 11 15 15 N 1.31951 * 119.84821 * 180.30024 * 14 13 12 16 16 C 1.32247 * 120.10712 * 359.96850 * 15 14 13 17 17 C 1.38509 * 120.25697 * 0.02562 * 16 15 14 18 18 N 1.31954 * 120.15508 * 0.02813 * 17 16 15 19 19 N 1.29832 * 109.87390 * 0.26630 * 12 11 10 20 20 H 0.97004 * 119.99760 * 359.97438 * 1 2 3 21 21 H 1.07999 * 125.56334 * 0.02562 * 10 9 7 22 22 H 1.08005 * 120.07580 * 0.24579 * 14 13 12 23 23 H 1.07998 * 119.87021 * 179.97438 * 16 15 14 24 24 H 1.08002 * 119.92711 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3104 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 3.7043 1.3464 -0.0006 5 1 1.8856 2.3965 -1.2124 6 1 1.8856 2.3964 1.2125 7 6 2.0088 -1.2097 -0.0005 8 1 3.0887 -1.2097 -0.0010 9 6 1.3028 -2.4323 -0.0016 10 6 1.9344 -3.6598 -0.0027 11 16 0.7487 -4.8920 -0.0031 12 6 -0.5350 -3.6893 -0.0026 13 6 -1.9816 -3.9916 -0.0031 14 6 -2.4208 -5.3179 -0.0093 15 7 -3.7137 -5.5815 -0.0157 16 6 -4.5923 -4.5930 -0.0157 17 6 -4.1617 -3.2766 -0.0095 18 7 -2.8712 -3.0012 -0.0041 19 7 -0.0224 -2.4965 -0.0078 20 1 -0.4850 0.8401 0.0004 21 1 3.0030 -3.8164 -0.0025 22 1 -1.7038 -6.1255 -0.0097 23 1 -5.6496 -4.8131 -0.0214 24 1 -4.8839 -2.4735 -0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798192.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:18 Heat of formation + Delta-G solvation = 68.097162 kcal Electronic energy + Delta-G solvation = -13140.483175 eV Core-core repulsion = 10758.954611 eV Total energy + Delta-G solvation = -2381.528564 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 233.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.91180 -39.72140 -35.50983 -34.99443 -33.27415 -30.70187 -27.68729 -26.74065 -25.44365 -23.48979 -21.00445 -19.70743 -18.07848 -17.94272 -17.59850 -17.06993 -16.42362 -15.97391 -15.35268 -14.68969 -14.62069 -13.96556 -13.56507 -13.37325 -12.95297 -12.67203 -12.52599 -12.30396 -12.24182 -11.61439 -11.31539 -10.68447 -10.07703 -9.99844 -9.83877 -9.19360 -8.44164 -6.42433 -0.67313 0.10143 0.64983 0.79871 1.36863 1.39781 1.52914 1.60314 2.22745 2.31382 2.84136 2.96718 3.33863 3.46266 3.50020 3.64850 4.19713 4.37402 4.53211 4.74758 5.04734 5.24196 5.33590 5.44438 6.12328 6.29461 6.49837 6.80636 6.85765 7.62049 8.43260 Molecular weight = 233.03amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.008381 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.675273 B = 3339.985574 C = 4201.814307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.021 3.979 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.469 4.469 8 H 0.089 0.911 9 C 0.187 3.813 10 C -0.468 4.468 11 S 0.091 5.909 12 C 0.051 3.949 13 C 0.136 3.864 14 C 0.067 3.933 15 N -0.443 5.443 16 C 0.061 3.939 17 C 0.054 3.946 18 N -0.444 5.444 19 N -0.402 5.402 20 H 0.279 0.721 21 H 0.152 0.848 22 H 0.182 0.818 23 H 0.222 0.778 24 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 -5.535 -0.014 9.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.198 4.198 3 Si 0.813 3.187 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.503 4.503 8 H 0.107 0.893 9 C 0.062 3.938 10 C -0.608 4.608 11 S 0.341 5.659 12 C -0.228 4.228 13 C -0.005 4.005 14 C -0.094 4.094 15 N -0.157 5.157 16 C -0.101 4.101 17 C -0.109 4.109 18 N -0.160 5.160 19 N -0.118 5.118 20 H 0.090 0.910 21 H 0.169 0.831 22 H 0.199 0.801 23 H 0.239 0.761 24 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.209 -6.011 -0.025 10.175 hybrid contribution 1.201 1.697 0.008 2.079 sum -7.008 -4.314 -0.017 8.229 Atomic orbital electron populations 1.70284 1.08513 1.29240 1.31979 1.26984 0.95875 1.04689 0.92262 0.85006 0.79237 0.75746 0.78749 1.17740 1.19115 1.19097 1.19361 0.94548 0.89392 1.47010 0.89338 1.18420 0.86178 0.94520 0.94655 1.25843 1.02865 0.94962 1.37168 1.81819 0.97604 1.11663 1.74838 1.25985 0.96350 0.92072 1.08363 1.19844 0.90084 0.91540 0.98999 1.23699 0.94342 0.94649 0.96712 1.68548 1.01493 1.36412 1.09283 1.24645 1.02570 0.88999 0.93897 1.24595 0.91917 0.99419 0.94941 1.68586 1.03669 1.36252 1.07531 1.67429 1.12043 1.20893 1.11424 0.91048 0.83073 0.80079 0.76116 0.77798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.25 11.69 21.79 0.25 -43.99 14 2 C 0.02 1.15 5.49 85.16 0.47 1.62 14 3 Si 0.99 40.13 29.56 68.60 2.03 42.16 14 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 14 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 14 6 H -0.27 -10.33 7.11 99.48 0.71 -9.62 14 7 C -0.47 -26.80 9.23 23.34 0.22 -26.59 14 8 H 0.09 4.77 7.84 -2.91 -0.02 4.74 14 9 C 0.19 10.84 6.46 39.69 0.26 11.10 14 10 C -0.47 -23.87 10.99 67.78 0.75 -23.13 14 11 S 0.09 3.85 22.07 -56.49 -1.25 2.60 14 12 C 0.05 2.51 7.38 87.51 0.65 3.16 14 13 C 0.14 5.63 6.75 41.83 0.28 5.91 14 14 C 0.07 2.19 10.78 85.03 0.92 3.11 14 15 N -0.44 -12.50 10.49 -194.09 -2.04 -14.53 14 16 C 0.06 1.35 11.22 84.70 0.95 2.30 14 17 C 0.05 1.49 11.22 84.74 0.95 2.44 14 18 N -0.44 -18.18 10.40 -184.46 -1.92 -20.10 14 19 N -0.40 -23.17 8.38 -182.91 -1.53 -24.71 14 20 H 0.28 14.45 8.30 -92.71 -0.77 13.68 14 21 H 0.15 7.21 8.06 -2.91 -0.02 7.19 14 22 H 0.18 5.21 7.27 -2.91 -0.02 5.19 14 23 H 0.22 2.44 8.06 -2.91 -0.02 2.41 14 24 H 0.21 3.84 8.06 -2.91 -0.02 3.82 14 Total: -1.00 -72.21 241.02 2.21 -69.99 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.24 Total: 8.66 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: 5.43 Total: -20.08 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -5.23 Total: -103.33 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.25 Total: 2.60 kcal Total: -72.21 2.21 -69.99 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798192.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.091 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds